Pungitius pungitius (ninespine stickleback): 119210486
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Entry
119210486 CDS
T07626
Symbol
dhx57
Name
(RefSeq) putative ATP-dependent RNA helicase DHX57
KO
K13026
ATP-dependent RNA helicase DHX57 [EC:
5.6.2.6
]
Organism
ppug
Pungitius pungitius (ninespine stickleback)
Brite
KEGG Orthology (KO) [BR:
ppug00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03012 Translation factors [BR:
ppug03012
]
119210486 (dhx57)
Enzymes [BR:
ppug01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
119210486 (dhx57)
Translation factors [BR:
ppug03012
]
Eukaryotic type
Initiation factors
Initiation associated factors
119210486 (dhx57)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
Helicase_C
DEAD
HA2_C
RWD
zf-CCCH_4
HA2_N
zf-CCCH
AAA_22
Torus
zf_CCCH_4
nSTAND3
NB-ARC
AAA_19
AAA_14
ResIII
NPHP3_N
zf-CCCH_2
Motif
Other DBs
NCBI-GeneID:
119210486
NCBI-ProteinID:
XP_037316441
LinkDB
All DBs
Position
2:complement(7794880..7803854)
Genome browser
AA seq
1459 aa
AA seq
DB search
MSARRRGGRPKREGGKLSKPGGRGRGGGGGGGGGSGGGGGSKKAGVGCWDDGDDFSLEFG
PPRPSRPGRGRGSGVRGRGGVKDAGRGRGGRDRDQDRSGRGSGRSRDDGKSFGKALPRSL
ARTRTSPKLGESIRPEMSTMPMQRLFMTNENQEQLKELLRNLQTQDFDEPYDESDSDYSG
EDEEEFDELDHRDEGQFWATTDEPVEKAESPAYDTESDDERPTPEAVISLFAIGKLCRYG
FDRERGKKALQSGGGEFGSTLEQLLCQIFIERYGQKAVSPDGLEVVPMDECLSQRQEEAL
ALTAIYGERFNERIANVVWTVTLDVSFLADSAAKNGRHVGSRGGGAVSIRDVCRFFLKGQ
GCRFGDKCKFKHQLPTKGRSRDGSPDWDGPSRPGFSSSSPPEYELEVRFPRGNRYPFQAP
IVAFSTTDESFGAAGRLSVTERLFGEALAAAKSNEPVVYTLITLCEDETIMRELLAVSHH
KYSTPPPVMAPPPPEPTVAKSKSARNNAPQESRSSSNNNSNPRSNRRIDLLANWRSIDIK
ETGETEEPDERDEEDEAIPVETESYVNLRKKIVNKHNLKTDNVLKENGKLCREFKMKPSS
GRFRSMLEQRKKLPAWQEKENILDLLDQCQVLVISGMTGCGKTTQIPQFILDASLGGPAD
QVVNIICTQPRRISAISVAQRVAQERAERLGNSVGYQIRLETVRTSATRLLYCTTGVLLR
RLESEADLTGISHVIVDEVHERTEESDFLLLVLKDLILQRPDMKIILMSATLNANLFSEY
FYNCPTIHIPGRTFPVDQFFLEDAIAKARYVIEDGSPYMRSGKQNSSFTSGRGGKADHRD
VVDDLGDDMWNFMSLCKKDFVKDSIPDQQLSLQELTVRFKDTKKSVLKTISAMDLDKINM
DLVESLLEWIVDGNHNYPPGAVLVFMPGLAEIKMLYEQLSSNRMFNNRGATRCEVYPLHS
TLSNEEQQAVFSRPPEGVTKIIISTNIAETSVTIDDVVYVIDSGKMKEKRYDATKSMESL
EDSWVSRANALQRRGRAGRVASGVCFHLFTSHCFQHQLAEQQLPEIQRVPLEQLCLRIKI
LDLFAERTLESVFSRLIEPPTMESLDAAKQRLRDLGALTADEKLTPLGYHLACLPVDVRI
GKLMLFGAIFRCLDPALTIAASLAFKSPFVSPWDKRDEANEKKLVFALAGSDHLALLQAY
KGWCSAAKNGRQAGFLYCRENFLSSRGLQEIASLKRQFAELLSDIGFIKEGLRARVMERM
SSKGTDGVLEATGPEANLNSDNIRLMSAMLCAALYPNVVQVRSPQGNYKMTSKGAMKMQP
KANELRFMTKDDGPVHVHPSSVNYTVRHFDSPYLVYHEKVKTSRIFIRDCSMVSVYPLVL
FGGGQVNVELQKGEFVVSLDDGWIRFAASSHQVAELVKELRWELDQLLEDKIRSPSMDLC
TCPRGSRIIHMIVHLVSTQ
NT seq
4380 nt
NT seq
+upstream
nt +downstream
nt
atgagtgcaaggaggagaggcgggaggccaaaaagagaaggggggaaattatcgaagccg
ggtggacgtggacgtggtggtggcggcggtggtggtggcggcagtggaggcggaggtgga
agtaagaaagcaggagttggttgctgggatgacggtgatgatttcagcctcgaatttgga
cctcctcgtcctagcagacctgggagaggacgagggagtggtgtccgtggccgtggtgga
gtaaaggatgccggtcgaggaagggggggtagagatcgagatcaagaccggagcggcaga
ggcagtgggagaagcagagacgatgggaaaagctttggcaaggctctcccgaggtccctg
gcgaggacacgaacaagcccaaagctaggggaaagcatcaggccggagatgagcaccatg
cccatgcagaggctcttcatgactaatgagaaccaagagcaactcaaggagcttctgcgg
aatctgcagacgcaggactttgatgagccctatgatgaatccgattcagattattcagga
gaagatgaggaagaatttgatgagttggatcaccgtgacgaaggccagttctgggccact
accgatgagccagtggagaaggcagagagcccagcatatgacacagagtctgatgatgaa
cggcccaccccggaagctgtcatctccttatttgcaataggaaaactttgcaggtatggg
tttgacagggagcgcggcaaaaaagccctgcagtctggtggaggggaattcggcagcact
ttagaacagctactctgccagattttcattgagcgctacggccagaaagcagtgtccccg
gatggccttgaagtggtgccgatggacgagtgtctgagccagaggcaggaggaagctctg
gcactgactgccatctatggtgagcgcttcaacgagcgcatagccaatgtggtctggaca
gtaaccctggacgtctcgttcctcgcagacagcgctgccaagaacggtagacacgtcggg
agtcgaggtgggggtgccgttagcatccgagacgtctgccggttcttcttgaaagggcaa
ggctgccggttcggggacaagtgcaagtttaagcaccagctcccgactaaagggagatct
agggatggatccccagactgggatggcccgagccggccaggcttcagcagctcctctcct
cccgagtatgaactagaggtccgattccccagggggaaccgttacccatttcaggccccg
atagtggcttttagcaccacggacgagtctttcggggctgcagggaggctcagtgtgact
gaaagattgttcggagaagccttggccgcggcgaagagcaacgagcctgttgtttacact
ctgatcactttgtgtgaggatgagaccatcatgagggaactgctggctgtcagtcatcac
aaatacagcacgccaccgcctgttatggcgcctcctccgccagagcctaccgtggcaaag
agtaagagcgcaaggaacaatgctcctcaagaaagccgaagtagtagtaacaataatagt
aatcctagaagcaacagaaggattgatctactggccaactggagatcaatagacatcaaa
gagaccggagagacggaggagccggatgagagggatgaggaggacgaggctattccagtc
gagactgagagttatgtcaatctgaggaagaagatagtgaataagcacaacctgaagact
gacaacgtactgaaggaaaatggcaagctgtgccgagagttcaagatgaaaccgtcatcc
gggcgtttcaggtccatgttggagcagaggaagaaactgccggcatggcaagaaaaagaa
aacatcctcgacctgttagaccagtgccaggtgctggtcatcagtgggatgacagggtgt
ggtaagactacccagattcctcagttcattctggacgcctcattgggtggaccagcggac
caggtggtcaacatcatctgtactcagccacgccgcatctccgccatctctgtggcccag
agagtggcacaggagcgcgcagagcgtctcggcaactccgtgggctaccagatccgcctg
gagacagttcggacgtctgccaccaggctgctgtactgcaccacgggcgtgttgctgagg
agactcgagagcgaggctgacctcacgggcatatcgcacgtcatcgtggatgaggtgcac
gagcgaacggaggagagtgactttctgctgttggtattgaaagacctgatattgcagagg
ccagacatgaagatcattctgatgagtgccacactcaatgccaacctattctctgagtac
ttttacaactgtcccaccatccatataccaggtcgtacctttcccgtggaccagtttttt
cttgaagatgccatcgctaaagcccgctatgtcatcgaggacggcagcccttatatgcgc
tcagggaaacagaactcttctttcacaagtggacgaggaggcaaagcagaccatagggat
gtggtggacgacttgggtgatgacatgtggaactttatgtctctctgtaagaaagacttt
gtgaaagactccataccagaccagcagctcagcctgcaggagctcacggtccgattcaaa
gacaccaagaagtctgtgttgaagactattagtgcaatggaccttgacaagatcaacatg
gacctggtggagagcctgctggagtggatcgtagacgggaaccacaactaccctccgggt
gcggtgcttgtgtttatgccgggcctggctgagatcaagatgctctacgagcagctctcc
tccaacagaatgttcaacaacaggggtgcaaccaggtgtgaggtgtacccactccattca
accttgtccaatgaggagcagcaggctgtgttcagccgcccccccgaaggtgtcacaaag
attatcatctccaccaacattgcagaaacctccgtaaccattgacgacgtggtatatgtc
attgactccggcaagatgaaggagaaaaggtacgatgccactaaaagcatggagagcctg
gaggactcgtgggtttcccgggccaacgctctgcagaggaggggtcgagcaggtcgcgtg
gcctcgggggtctgcttccacctcttcaccagccactgcttccaacaccagctggctgag
caacaactgcctgagatccagagagtccctctagagcagctctgcctgcggatcaagatc
ctggacttgtttgctgagcggacgcttgagtctgtcttctctcggctcatcgaacctccg
acgatggagagcttggacgcagcaaagcagcgcctgcgggacctcggagctctaactgca
gatgagaaactgaccccgctgggctaccacctggcctgtctgcccgtcgacgtgcgcatc
gggaagctcatgctgtttggcgccatctttcgctgcctcgacccagcactcaccatcgca
gccagtctggccttcaaatcaccatttgtgtctccatgggataagcgggacgaagccaat
gagaagaaacttgtctttgccttggccggcagtgaccatctagctttgttacaggcatac
aagggatggtgcagcgctgcaaagaacggccggcaggccggcttcctctactgcagggag
aactttctgtcttcgaggggattacaagagatcgcaagtctgaagaggcagtttgcagag
ttgctgtctgacattggcttcatcaaggagggactgagggccagggtcatggagcgcatg
tcctctaaaggaaccgacggcgtcctagaggccaccggccccgaggcgaatttgaactct
gacaacatccggcttatgtccgccatgctttgtgctgccctctatccaaatgtggtccag
gtacgttctccgcaggggaattacaagatgacgagcaaaggagcgatgaagatgcagccc
aaagccaacgagctccgtttcatgaccaaggatgacggccccgtccatgtgcacccgtcg
tctgtcaactacacagtacgccacttcgacagcccctacctggtgtaccacgagaaggtg
aaaacgagccgcatcttcatcagggactgcagcatggtctccgtctacccgctggtgctg
ttcggaggcggacaagtcaacgtggagctccagaagggagagtttgtcgtctccctcgac
gatggctggatccgattcgctgcctcttctcatcaggtggccgagctggtgaaggagctg
cgctgggagttggaccagctgctggaagataaaatccggagcccgagcatggacctgtgc
acctgcccccgcggttcccgcatcatccacatgatagtccaccttgtctcgacacagtag
DBGET
integrated database retrieval system
