Pungitius pungitius (ninespine stickleback): 119210551
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Entry
119210551 CDS
T07626
Symbol
polr1a
Name
(RefSeq) DNA-directed RNA polymerase I subunit RPA1
KO
K02999
DNA-directed RNA polymerase I subunit RPA1 [EC:
2.7.7.6
]
Organism
ppug
Pungitius pungitius (ninespine stickleback)
Pathway
ppug03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
ppug00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
119210551 (polr1a)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ppug03021
]
119210551 (polr1a)
Enzymes [BR:
ppug01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
119210551 (polr1a)
Transcription machinery [BR:
ppug03021
]
Eukaryotic type
RNA polymerase I system
RNA polymerase I
Core subunits
119210551 (polr1a)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_1
RNA_pol_Rpb1_4
HMG_box_2
Motif
Other DBs
NCBI-GeneID:
119210551
NCBI-ProteinID:
XP_037316588
LinkDB
All DBs
Position
2:27668746..27691924
Genome browser
AA seq
1711 aa
AA seq
DB search
MLFAKELPWRQLEGMSFGMYSAEEIRKLSVKLISNVRLLDGVGNVALNGLYDLALGPADN
KEVCSTCCQDFNNCPGHLGHVELPLPVYNPLFFDKLYLFMRGSCLSCHMLTCPRAAIHLL
LNQLKLLEHGSMQEVYQVEAVLKQHLEENPKATGDEIAMLLKQFTATIVGVNTEGSESTK
PIKHLVEKKNSLINDFWRNQMKSRKCPYCRTGRFTVRREHNSKLIVTMPSGVQTTGKSND
DLIPGKRVYLTANTAREHLTKLWENEGFFLNCLFAGLGDGTMLREGEGSSYPDLFFLELL
VVPPARYRPINRLGEQMFTNGQTINMQAVMKDCVTLRKLLAFIAGEKTMQGEEEEQQQQQ
EGEAPEQTDQTFLLNIPGLTVTDKLYNTWVRLQTHVNIVFDSDMDKIMMEKYPGIRQILE
KKDGLFRKHMMGKRVDYAARSVICPDMYIETNEIGIPMVFATKLTYPQPVTPWNVKELRQ
AVLNGPNVHPGASMVINEDGRRTILSPSSFTQREVVAKQLLTPVPGPHKMAMKIVNRHIK
NGDVLLLNRQPTLHRPSIQAHCARILPGEKVLRLHYANCKAYNADFDGDEMNAHFPQSEL
ARAEAYTLVGTDQQYLVPKDGKPLAGLIQDHMVSGTRMTIRGCFFTRVQYIELVYRGLTD
KPGRVQLLPPAILKPQQLWTGKQVVSTLLLNIIPQKAVPLNLNGKSKIPSKAWIQVPPRA
APGYRPDSMCDSQVVIRQGELLVGVLDKAHYGSSAYGLVHCCYELYGGQTSGKLLSCLAR
LFTAYLQLYRGFTLGVEDILVKPGANKQRKEIIEASLQIGSKALQLAFNLPTNVDRGDAQ
SRWQDAHLNPDQSDFSMADHKFKEVANQVNNDINKVCMPVGLHTSFPDNNLQLMVQSGAK
GSTVNTMQISCLLGQIELEGRRPPLMPSGKSLPCFQPYDPAPGAGGFVSGRFLTGIKPQE
FFFHCMAGREGLVDTAVKTSRSGYLQRCVIKHLEGLVVQYDLTVRDSDGSVVQFLYGEDG
LDIPKTPFLQQKQFSFIEENYEVIKRSQGLDKVLARLDPKAALQHFASIKRWREKRQRLC
PRRGAFLLFSQKKLPKLKRAEGRTNADVYCRNNAESELFQQWLSLDESSRAKYTRKASRC
PEPSLGLLKPDTCFGSVSENFHGIMESYLQSEGRRGRDSVDTHSLRQLLYYKWQRSLCDP
GEAVGLLAAQSIGEPSTQMTLNTFHFAGRGEMNVTLGIPRLREILMVASSNIKTPMMSVP
VLNTKKALKRAKTLRKRLTRVCLAEVLQRVDVVETLRIDNKQKLRSFQVTFHFLPPERYC
DDKLLSPKQILHYMETRFFRLLLESIKKRTAKLASIAVETRKATYRDKDYDGEGTDEPAG
LDDAGDEVEREVVDDQANEGDTDATDAKQKGKREEEVDYGSEEEDGADNAEVMEDFGEDE
EERAEMLVEKDEESEKDARKVSQPKGERSGGKSRPAKTAGSVAGDETLDQIRTNMVLESN
SAIESYCYDQQHELWCEVCLVLPVSNVHFDLTAVLGTLAQNAVIAETRGLTRCLLGESTT
KRGEKEMVLNTEGINLHEMFNHGDILDINRLYSNEVHAMAKTYGIEVGLKVIEKEIKDVF
AVYGIEVDPRHLSLVADYMCFEGVYKPLNRHAIQSNSSPLQQMTFETSYKFLKQATMLGS
HDQLVSPSACLVTGKVVKGGTGLFELKQPLQ
NT seq
5136 nt
NT seq
+upstream
nt +downstream
nt
atgttatttgctaaagaactgccatggcggcaactggagggcatgtcatttggcatgtac
tctgccgaggagataaggaagctgagtgtgaagttgatctctaacgtcaggttgctcgat
ggggttgggaacgtggccctgaacggcctgtacgatctagcccttgggccagcagacaac
aaagaggtgtgttccacctgttgccaagacttcaacaactgtccaggacacctgggacat
gtagagctacctctacctgtatacaacccgctgttctttgataaactctacttgtttatg
cgtggttcctgtctttcgtgtcacatgttaacatgtccccgagctgccatccacctgctg
ctgaatcagctgaagttattggaacatggttccatgcaggaggtctaccaagtagaggcg
gttctcaagcaacacctggaagagaatcccaaagccactggggacgagatcgcgatgttg
ctgaagcagtttacagccacgatagttggagtgaacactgagggctcagagagcaccaaa
ccgatcaaacatcttgttgaaaagaagaacagtttgataaacgatttctggaggaaccaa
atgaaaagtaggaagtgcccttactgcagaacggggaggtttacagtgcgtcgtgaacac
aacagcaagctgattgtcaccatgccatcaggagtacagactactggcaaaagcaatgat
gatctgattcctggaaagagagtgtacctgacagctaacacagctagggaacacctcacc
aaactgtgggagaatgaaggtttcttcttaaactgtctgtttgctgggctgggggatggg
acgatgctgagggagggagagggaagttcctatccagacctcttcttcctggagctactg
gtggtcccaccggccaggtatcgtccaattaatcgactgggtgaacagatgttcacaaac
gggcagacgatcaacatgcaggccgtcatgaaggactgtgtaaccctaaggaaacttctg
gccttcatagcaggggagaaaacgatgcagggggaagaggaagagcagcaacagcagcag
gagggggaggctcctgaacagacggaccagacatttctgttaaatatccccggactcacg
gtaacggataaactctacaacacttgggttcgcctgcagacgcacgtcaacatcgtcttt
gacagcgatatggacaaaataatgatggagaaataccctggaatcagacagatcttggag
aagaaggacggattgttccggaaacacatgatgggaaaacgagtggactatgccgcacga
tccgtcatttgtcccgacatgtacatcgagaccaacgagattggaatacctatggtgttt
gccacaaagctgacttacccgcagcccgtcactccatggaacgtgaaggagcttcgtcag
gccgtcctcaacggacccaacgtccaccctggtgcgtccatggtgataaacgaggacggt
aggaggaccatcctatcacccagcagctttacacaaagagaagtcgttgccaagcaactg
ctgactcccgttcccggcccgcacaagatggcaatgaagatagtaaatcgccacataaag
aatggagatgttttgttactcaacagacagccaactctgcacagaccctccatacaagct
cactgtgcacgcattttaccaggagagaaggtattaaggctccactatgccaactgcaag
gcgtacaatgccgactttgatggagatgaaatgaacgcacacttccctcaaagtgagctg
gccagagcagaggcctacacgctagtcggcaccgaccagcagtacctcgtccccaaggat
ggtaaacctctagccggtttgatccaggaccacatggtgtctggtacgaggatgacaata
cgaggctgtttcttcacccgagtccagtacattgagttagtgtaccgaggactcactgac
aaaccaggccgagtccagctgctgccaccggccatcctcaaaccccaacagctctggaca
ggaaagcaggttgtgtcgacgctcctgctgaatataatcccccagaaggctgtgcctctc
aacctgaatggcaaatcgaaaatccccagcaaagcatggatccaagtcccaccacgggct
gctccgggatacagacctgacagcatgtgtgactcacaggtggtgattcgccagggcgag
ctgttggtgggggttctggacaaagcccactacggctcttccgcctacggtctagtccac
tgctgctacgagctgtacggagggcagaccagtggcaagctgctcagctgtctggctcga
ctcttcactgcttacctgcagctgtacagaggctttaccctgggtgtggaagacatcctt
gtgaaaccaggcgctaacaagcagaggaaagaaatcattgaagcatccttgcagattggc
agcaaggccctccagctagccttcaacctgcccactaacgtggaccgtggagatgcccag
agccgctggcaggatgcccacctcaacccggaccagagtgacttcagcatggccgaccac
aagttcaaagaggtggccaaccaagtgaacaacgacatcaacaaggtgtgcatgcccgtc
ggactccacacctctttccctgacaacaatctccaactgatggtccaatcaggagccaag
ggatctactgtaaacaccatgcagatttcctgtctactgggccagatcgagttggagggc
cgtaggcctcctctgatgccctccgggaagtcgttgccgtgcttccagccatatgacccc
gcccccggtgctgggggctttgtttctggaaggtttctcactggcatcaagccacaggag
tttttctttcactgtatggccggcagagagggactggtggacactgctgtaaaaacatct
agatcaggatacctgcagagatgtgtaataaagcatctggagggcctggtagtgcagtac
gatctgactgtgagggacagcgatggatctgtggtccagttcctgtatggtgaagacggc
ctagatatccccaagacgcccttcctgcaacaaaagcagttctctttcatagaggaaaac
tacgaggttatcaaaaggtcccagggcctggacaaggttttggcacgtctggacccgaag
gctgctcttcaacactttgcatccatcaagcgctggagagaaaagagacagaggctgtgt
ccgcgcagaggagcgttcttgctgttttcccagaagaagttgcccaaactgaagagggcc
gaaggacgaaccaatgcagatgtctactgcagaaataatgcagagtcagagctcttccag
cagtggctttccctggacgaatctagcagggccaagtacaccaggaaggcgtcccgctgc
cccgagccttcgctgggcttgttgaagcccgacacctgctttggctcggtgtctgagaac
ttccacggcatcatggagagttacctccagagcgagggaaggaggggccgagacagcgtg
gacacccacagcctccggcagctgttgtactacaagtggcagcggtcgctgtgtgatccc
ggcgaggcggtgggtctgctggcggctcagtccatcggcgagccctccacccagatgacc
ctcaacaccttccactttgccggcagaggagagatgaacgtcactttgggaataccccga
ctgagagagatcctgatggtggccagctccaacattaaaactcccatgatgagcgtccct
gtgctgaacaccaagaaagccttaaagagggccaagacgcttcgtaagagactcaccaga
gtctgtttggccgaggtgctgcagcgggtggatgtggtagaaactcttcggattgataat
aagcaaaagctgcggtccttccaagtaacgttccacttcctgcctccagagcgttactgt
gacgataagctgctatcgcccaaacagatcctccactacatggaaactaggttcttccgt
ctgctgctggaatccatcaagaagcgcactgccaagctggcgtccattgccgtggaaacg
aggaaggccacctacagagataaagactatgacggcgagggaacagatgagccagcaggg
ttggatgacgcgggggacgaagtggagcgagaggttgtggacgaccaggcgaatgaagga
gacactgacgctacagacgccaagcagaaaggcaaacgggaggaggaggtggactatggg
agtgaggaagaggacggagctgacaacgccgaggttatggaagactttggggaggacgag
gaggagagggcagagatgctggtggagaaagacgaggagagtgaaaaggacgctcggaag
gtgtcccagccaaagggtgaaaggtcgggggggaagagtagaccggcgaaaacagcagga
agtgtggcaggagacgagacgctggatcagataaggaccaacatggtcctggagtccaac
tcggcgatagagagttactgctacgatcagcagcatgagctctggtgtgaggtgtgcctg
gtcctgccggtgagcaacgtacactttgacctgactgcggtccttgggacgctggcccaa
aacgccgtcatcgcagagaccaggggcttgacgcgctgcctgctgggcgaatccacgacg
aagcgcggagagaaggagatggtgctcaacacggagggcatcaacctgcacgaaatgttc
aaccacggcgatatcttggacatcaacagactgtactccaatgaggttcatgccatggcg
aaaacatatgggattgaagtgggtctgaaggtcatagagaaggagattaaagatgtcttt
gccgtctatggtatcgaggtggaccccagacatctgtccctggtagcagattacatgtgt
tttgaaggcgtgtacaagcctctgaaccggcacgccatccagtccaactcctcccctttg
cagcagatgacttttgagaccagctacaaattcctcaaacaggcgaccatgctgggatca
catgaccagctggtatctccatcagcctgcctcgtcacagggaaagtggtgaaaggtgga
acgggactgtttgagctgaaacaacctctgcagtaa
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integrated database retrieval system
