Pungitius pungitius (ninespine stickleback): 119210737
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Entry
119210737 CDS
T07626
Symbol
upf2
Name
(RefSeq) LOW QUALITY PROTEIN: regulator of nonsense transcripts 2
KO
K14327
regulator of nonsense transcripts 2
Organism
ppug
Pungitius pungitius (ninespine stickleback)
Pathway
ppug03013
Nucleocytoplasmic transport
ppug03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
ppug00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
119210737 (upf2)
03015 mRNA surveillance pathway
119210737 (upf2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ppug03019
]
119210737 (upf2)
Messenger RNA biogenesis [BR:
ppug03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
119210737 (upf2)
mRNA cycle factors
P-body specific factors
119210737 (upf2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
MIF4G
Upf2
Motif
Other DBs
NCBI-GeneID:
119210737
NCBI-ProteinID:
XP_062415261
LinkDB
All DBs
Position
2:complement(1379788..1392248)
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AA seq
1298 aa
AA seq
DB search
MTDVCYATISSMPAERKRSVNMDEKDVCTFSSKEKDRDGERRPASARDKAKDEAKMSGKK
DGGKEEKRKRLEEEKKKKEEKERRKKEEEKQKAEEEQKKKEEEDKRQQEEEEKKLQEEEA
RRQREEEAALLKEKEEGHQLHQEAWERNQSRKELRSKNQNAQEGRPEEAFFSRLDSSLKK
NTAFVKKLRTLTEQQRDSLSHDFGSLNLSKYIGEAVSSVXEAKLKISDVGCAVHLCSLFH
QRYTEFAPLLLQAWKKHFEARKEDKSPNVSKLRTDLRFIAELTIVGLFTDKEGLSLIYEQ
LKSIIDPDRETHTHVSVVISFCKHCGDDIAGLLPXKVKLAAEKFGLGFPPSEIISTEKQQ
PFQNLLXEYFTSLTKHLKXDHRELQNTESRTGARILHSKGELSEDRHKQYEEFATSYQKL
LANTQSLADLLDENMPELPQDKTVQEEHGPGIDIFTPGKPGEYDLEGGIWEDEDARNFYE
NLVDLKAFVPAILFKDNEKSGQGKDKDDAKTALLSLSGSDGKDGRTRRAPPPPPPHHPEE
LELELEALDIADEPLEXEGPDEAESEELAKKLLDEQEQEDEEANTGSHLKLIVDAFIQQL
PNCVNRDLIDKAAMDFCMNMNTKSNRRKLVRALFTVPRQRLDLLPFYSRLVATLHPCMSD
VAEDLCSMLKGDFRFHIRKKDQINIETKNKTVRFIGELAKFKMFSKTDTLHCLKMLLSDF
THHHIEMACTLLETSGRFLFRSPDSHLRTSVLLEQMMRKKQAQHLDARYVTMVENAYYYC
NPPPMEKTVRKKRPPLQEYIRKLLYKDLSKVTTEKVLRQMRKLPWQDPEVKSYLICCMVN
IWNVKYNSIHCVANLLAGLVAYQEDVGIHCVDGVLEDIRLGMEVNQPKFNQRRISSAKFL
GELYNYRMVESAVIFRTLFSFISFGINQDGSPSALDPPEHLFRIRLVCTLLDTCGQYFDR
GSSKRKLDCFLFYFQRYIWWKKSTEVWTKDHPFPIDIDYMISDTLELLRPKMRLSCSLED
ATKQVTELEREVLVKLGLAMGRDGRSSALSEEDDDGDDDEEGGAETEEQSGNESEMNEQE
EDEGSENEEEEREEEEEENTDYLTDSNKENETDEENNEVTIRGGGLKHVACAEDEDFIQA
LDKMMLENLQQRSGETVKVHQLDVAIPLQLKSQLKKGGSREPCIGEDEADASDTMQFVML
TRKGNKQQYKILNVPLSSHLAANHFNQQQAEQEERMKMKKLTLDINERQEQEDYQEMLQS
LAQRPAPANTNRERRPRYQHPKGAPNADLIFKTGGRRR
NT seq
3897 nt
NT seq
+upstream
nt +downstream
nt
atgaccgatgtttgttatgctacaattagcagtatgcctgctgaacgcaagcgctcagta
aacatggacgagaaagacgtttgcaccttcagcagcaaggagaaggacagagatggtgag
agaagaccagcgtccgcacgagacaaagcgaaagacgaggccaagatgagcggcaaaaaa
gacgggggcaaggaggagaagaggaagcgcctggaggaggagaagaaaaaaaaggaggaa
aaagagcggagaaagaaagaggaggagaagcagaaagcggaggaagagcagaagaagaaa
gaggaggaggataagagacagcaggaggaggaggagaagaagcttcaagaggaggaggcc
aggagacaacgtgaagaggaggcggctctcctgaaggaaaaggaggagggacatcagctg
caccaggaggcctgggagcgcaatcagagcaggaaggagctccgcagcaagaaccagaac
gcccaggagggtcggcccgaggaggccttcttcagccgcctggactccagcctcaaaaag
aacacggcctttgtgaagaagctgcgcacgcttaccgagcagcagcgggactcgctctcc
cacgacttcggctctctgaacctcagcaagtacatcggcgaggccgtgagctccgtcngt
gaggccaagctgaagatctccgacgtgggctgcgccgtccacctgtgctccctcttccac
cagcggtacaccgagttcgccccgttgctgctgcaggcgtggaagaagcacttcgaggcc
aggaaggaggacaagtcgcccaacgtgagcaagctgcgcaccgacctgcgcttcatcgcc
gagctcaccatcgtcggcctcttcaccgacaaggagggcctgtctctgatctacgagcag
ctgaagagcatcatcgatcccgaccgggagacgcacacccacgtgtcggtggtgatcagc
ttctgcaagcactgcggggacgacatcgccggcctgctgcccngcaaggtcaaactggcc
gccgagaagttcggcctgggcttccctcccagcgagatcatcagcacagagaaacagcag
cccttccagaacctcctgncggagtacttcacctcgctcaccaagcacctgaagnaagac
caccgcgagctgcagaacaccgagagcagaacaggtgcgcgcatcttgcactccaaaggg
gagctgagcgaggaccgacacaagcagtacgaggagttcgccacctcgtaccagaagctg
ctggccaacacccagtctctggcggacctgctggacgagaacatgcccgagttgcctcag
gacaagaccgtgcaggaggagcacggccccggcatcgacatcttcacccccggcaagccc
ggagagtacgacctggagggcgggatctgggaggatgaggacgcccgcaacttctacgag
aacttggtggacctgaaggccttcgtccccgccatcctcttcaaggacaacgagaagagc
ggccagggcaaagacaaggacgacgccaagaccgccctgctgtcgctgtccggttcagat
ggcaaagacggaaggacgcggcgggcacctccaccacccccaccccaccacccagaggag
ctagagcttgagctggaggctctggacatcgcggacgaacctctggaanctgagggaccg
gacgaggcggagagcgaagagctggccaagaagctgctggacgagcaagaacaagaggac
gaagaggccaacaccgggtcccacttgaagctgatcgtggacgccttcatccagcagctc
cccaactgcgtcaacagagacctcatcgacaaggctgccatggacttctgcatgaacatg
aacaccaagtccaacaggaggaagctggtccgagccctcttcaccgtgcccaggcagagg
ttggaccttctgcccttctactctcgcctggtggcgactcttcacccgtgcatgtcggac
gtggccgaggacctgtgctccatgctgaagggagacttcaggtttcacatccggaagaag
gaccagatcaacatcgagaccaaaaacaaaaccgtcagattcatcggggaactggccaag
ttcaagatgttctccaaaaccgacacgctgcattgtctcaagatgctgctgtccgacttc
acccaccaccacatagagatggcgtgcacgctgctggagaccagcggccgcttcctcttc
agatcccccgactctcacctgcggaccagcgtcctgctggagcaaatgatgcgtaaaaag
caggcccagcatctggacgcccgctacgtgaccatggtggagaacgcctactactactgc
aaccccccccccatggagaagacggtgaggaagaagaggccgccgctgcaggagtacatc
cgcaagctgctctacaaggacctgtccaaggtcaccacggagaaggtgctgaggcagatg
cgcaagctgccctggcaggaccccgaggtcaagagctacctgatctgctgcatggtcaac
atctggaacgtcaagtacaacagcatccactgcgtggccaacctgctggccggcctggtg
gcctaccaggaggacgtgggcatccactgcgtggacggagtcctggaggacatccggctg
ggcatggaggtcaaccagcccaagttcaaccagcggcgcatcagcagcgccaagttcctg
ggcgagctgtacaactaccgcatggtggagtccgccgtcatcttccgcaccctcttctcc
ttcatctccttcgggatcaaccaggacggcagccccagcgccctggacccccccgagcac
ctgttccgcatccgcctggtctgcactctgctcgacacctgcggccagtactttgaccgc
ggctccagcaagaggaagctggactgcttcctcttctacttccagcggtacatctggtgg
aagaagagcacggaggtttggaccaaagatcatccgttccccatcgacatcgactacatg
atcagcgacacgctggagctgctgcggcccaagatgaggctcagctgctccctggaggac
gccaccaagcaggtcaccgagctggagagggaggtgctcgtcaaactaggtctggccatg
gggagggacggtcgctccagcgccttgagcgaggaggacgacgatggcgacgatgacgag
gagggcggcgctgagaccgaagagcagtcgggcaacgagagcgagatgaacgagcaggag
gaggacgaggggtccgagaacgaagaagaggagcgcgaggaagaggaagaagagaacacc
gactacctgaccgactccaacaaagagaatgagacggacgaggagaacaacgaggtcacc
atccgcggcggcgggctgaagcacgtggcgtgcgccgaggacgaggacttcatccaggct
ctggataagatgatgctggagaacctgcagcagcgcagcggcgagacggtgaaggtgcac
cagctggacgtggccatcccgctgcagctgaagagccagctgaagaagggcggctccagg
gagccgtgcatcggcgaggacgaggccgacgcctccgacaccatgcagtttgtcatgctg
acacgcaagggcaacaagcagcagtacaagatcctgaacgtgcccctctcgtcccacctg
gcggcgaaccacttcaaccagcagcaggccgagcaggaggagcgcatgaagatgaagaag
ctcacgctggacatcaacgagaggcaggagcaggaggactaccaggagatgctgcagtcc
ctcgcgcagcgcccggctccggccaacaccaaccgggagcgccggcctcgctaccagcac
ccgaaaggcgcccccaacgccgacctcatcttcaagaccgggggaaggagacgctga
DBGET
integrated database retrieval system
