KEGG   Pungitius pungitius (ninespine stickleback): 119210935
Entry
119210935         CDS       T07626                                 
Symbol
smu1a
Name
(RefSeq) WD40 repeat-containing protein SMU1
  KO
K13111  WD40 repeat-containing protein SMU1
Organism
ppug  Pungitius pungitius (ninespine stickleback)
Brite
KEGG Orthology (KO) [BR:ppug00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:ppug03041]
    119210935 (smu1a)
Spliceosome [BR:ppug03041]
 Complex B
  Other components
   Complex B specific factors
    119210935 (smu1a)
SSDB
Motif
Pfam: WD40 WD40_WDHD1_1st WD40_Prp19 Beta-prop_EML_2 Beta-prop_TEP1_2nd WD40_CDC20-Fz WDR55 WD40_MABP1-WDR62_2nd EIF3I Beta-prop_CAF1B_HIR1 ANAPC4_WD40 Beta-prop_EML Beta-prop_WDR90_POC16_2nd Beta-prop_WDR75_1st LisH_TPL NBCH_WD40 Beta-prop_RIG_2nd Ge1_WD40 WDR90_beta-prop_4th Beta-prop_Nup120_160 WD40_MABP1-WDR62_1st Beta-prop_TEP1_C Beta-prop_NWD2_C Beta-prop_DCAF4 Beta-prop_IFT122_1st Beta-prop_Vps41 Beta-prop_SPT8 Beta-prop_IFT140_1st Beta-prop_HPS5 Beta-prop_NUP159_NUP214 Beta-prop_EIPR1 Beta-prop_WDR19_1st Beta-prop_BBS7 Beta-prop_DCAF12 Beta-prop_WDR35_TULP_N Beta-prop_SCAP Beta-prop_VPS8 Beta-prop_WDR75_2nd WD40_RFWD3 Beta-prop_IP5PC_F VPS8_N PROPPIN WD_LRWD1 zf_topless LisH DUF7165 Phi29_Phage_SSB LisH_PAC1
Other DBs
NCBI-GeneID: 119210935
NCBI-ProteinID: XP_037317362
LinkDB
Position
2:16889405..16894789
AA seq 513 aa
MSLEVESADVIRLIMQYLKENNLQRTLVTLQEETTVSLNTVDSIESFVADINSGHWDTVL
QAIQSLKLPDKTLIDLYEQVVLELIELRELGAARSLLRQTDPMIMLKQTQPERYIHLENL
LARSYFDPREAYPDGSSKEKRRAAIAQALAGEVSVVPPSRLMALLGQSLKWQQHQGLLPP
GMTIDLFRGKAAVKDVEEEHFPTQLYRHIKFGQKSHVECSRFSPDGQYLVTGSVDGFIEV
WNFTTGKIRKDLKYQAQDNFMMMDDAVLCMGFSRDTEMLATGAQDGKIKVWKIQSGQCLR
RFERAHSKGVTCVSFCKDSSQLLSASFDQIIRVHGLKSGKTLKEFRGHTSFVNEAAFTPD
GHHIISASSDGTVKMWNMKTSECTNTFKPLGTSAGTDITVNNVMQLPKNPEHFVVCNRSN
TVVIMNMQGQIVRSFSSGKREGGDFVCCTLSPRGEWIYCVGEDFVLYCFSTVTGKLERTL
TVHEKDVIGIAHHPHQNLISTYSEDGLLKLWKP
NT seq 1542 nt   +upstreamnt  +downstreamnt
atgtctctggaagtggaatccgcagacgtgatccgtctgatcatgcagtacctgaaggag
aacaatctgcagcggactctggtcaccctgcaggaggagaccaccgtgtctctgaacacc
gtggacagcatagagagctttgtggccgacatcaacagcggccactgggacaccgtgctg
caagccatccagtccctcaagctgcccgataagaccctgatcgatctctacgagcaggtg
gtgttggagctgattgagttaagagagttgggtgccgcccgttccctcctcaggcagacc
gaccccatgatcatgctgaagcagacccagccggagagatacatccatctggagaacctg
ctggctcgttcttactttgatcccagagaggcgtacccagacggcagcagtaaggagaag
cgccgggcagccatcgcccaggctctggcgggggaggtcagcgtggtgccgccctctcgt
ctcatggcgctgctgggacagtctctgaagtggcagcagcaccagggcctcctgccgccc
ggtatgactattgatttgttcaggggtaaggctgcggtcaaggatgtggaggaggagcac
ttccctacacagctgtacagacacatcaagtttggacagaaatctcacgtggagtgttcc
agattctcccccgacggtcagtacctggtcaccggctctgtggacggcttcattgaggtt
tggaacttcaccaccggcaaaatcagaaaggatctgaagtaccaggctcaagataacttc
atgatgatggacgacgcggtgttgtgtatgggcttcagtcgagacacggagatgttggcc
accggagcccaggatggaaagatcaaggtgtggaagatccagagcggtcagtgtctgagg
cggttcgagcgcgctcacagtaaaggagtgacgtgcgttagcttctgtaaagacagcagt
cagctcctcagcgcctccttcgaccagatcatcagagttcacggcctgaagtcgggtaaa
acactcaaggagttccgcggccacacctcctttgtgaacgaggcggcgttcactccagac
ggccaccacatcatcagcgcctcctcggacgggaccgtcaagatgtggaacatgaagacc
tccgagtgcaccaacaccttcaaacctctgggcacgtcggccggcaccgacatcacggtc
aacaacgtcatgcagctgcccaagaacccggagcactttgtggtgtgcaaccgctccaac
acggtggtcatcatgaacatgcagggacagatcgtgaggagcttcagctccggtaaaagg
gaaggcggagactttgtgtgctgcaccctgtcgccccgcggcgagtggatctactgcgtg
ggagaagactttgtgctctactgcttcagcaccgtcaccggcaagctggagagaacgctg
acggtccacgagaaggatgtgatcggcatcgcccaccacccccaccagaacctgatcagc
acctacagcgaggacggcctgctgaagctctggaagccctga

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