Pungitius pungitius (ninespine stickleback): 119211390
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Entry
119211390 CDS
T07626
Symbol
prpf19
Name
(RefSeq) pre-mRNA-processing factor 19
KO
K10599
pre-mRNA-processing factor 19 [EC:
2.3.2.27
]
Organism
ppug
Pungitius pungitius (ninespine stickleback)
Pathway
ppug03040
Spliceosome
ppug04120
Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:
ppug00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
119211390 (prpf19)
09123 Folding, sorting and degradation
04120 Ubiquitin mediated proteolysis
119211390 (prpf19)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
ppug03041
]
119211390 (prpf19)
04121 Ubiquitin system [BR:
ppug04121
]
119211390 (prpf19)
03400 DNA repair and recombination proteins [BR:
ppug03400
]
119211390 (prpf19)
Enzymes [BR:
ppug01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
119211390 (prpf19)
Spliceosome [BR:
ppug03041
]
Complex B
Other components
Prp19 complex
119211390 (prpf19)
Complex C
Prp19-CDC5 complex
119211390 (prpf19)
Ubiquitin system [BR:
ppug04121
]
Ubiquitin ligases (E3)
U-box type E3
119211390 (prpf19)
DNA repair and recombination proteins [BR:
ppug03400
]
Eukaryotic type
Other factors with a suspected DNA repair function
PSO4 complex
119211390 (prpf19)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40_Prp19
Beta-prop_WDR5
Beta-prop_WDR3_1st
Beta-prop_THOC3
WD40
WD40_WDHD1_1st
Beta-prop_WDR3_2nd
Prp19
Beta-prop_WDR36-Utp21_2nd
WD40_CDC20-Fz
Beta-prop_EML_2
WD40_Gbeta
Beta-prop_WDR90_POC16_2nd
WDR55
WD40_MABP1-WDR62_2nd
EIF3I
Beta-prop_TEP1_2nd
Beta-prop_CAF1B_HIR1
Beta-prop_WDR36-Utp21_1st
Beta-prop_EML
Beta-prop_WDR75_1st
Beta-prop_SCAP
ANAPC4_WD40
Beta-prop_Aladin
WD40_MABP1-WDR62_1st
NBCH_WD40
Beta-prop_IFT140_1st
Beta-prop_TEP1_C
Beta-prop_IFT122_1st
Beta-prop_WDR41
Beta-prop_EIPR1
WDR90_beta-prop_4th
Beta-prop_WDR19_1st
PEP5_VPS11_N
Beta-prop_RIG_2nd
Beta-prop_HPS5
Beta-prop_Vps41
Beta-prop_SPT8
U-box
Beta-prop_DCAF4
WD40_RFWD3
Beta-prop_VPS8
PROPPIN
Beta-prop_Nup120_160
Beta-prop_ACSF4
Beta-prop_DCAF12
Beta-prop_WDR35_TULP_N
Tricorn_2nd
RMC1_N
B-prop_COPA_B_2nd
Cytochrom_D1
Ge1_WD40
Peripla_BP_2
CoV_NSP15_N
zf-Nse
DUF2518
ATG16
Motif
Other DBs
NCBI-GeneID:
119211390
NCBI-ProteinID:
XP_037318155
LinkDB
All DBs
Position
2:complement(23762326..23767317)
Genome browser
AA seq
505 aa
AA seq
DB search
MSLVCAISNEVPEHPCVSPVSSQVFERRLIEKYIAENGTDPMNGQPLSEEQLVDIKVSHP
IRPKAPSATSIPAILKSLQDEWDAVMLHSFTLRQQLQTTRQELSHALYQHDAACRVIARL
TKEVTAAREALATLKPQAGLVAPQAIPTSQPAAAGAGGEPMEISEQVGMTPEIIQKLQNK
ATILTTERKKRGKTVPEELIRAEDLSKYRQVASHAGLHSASVPGILALDLCPSDTNKVLT
GGADKNVVVFDKSDEQIVATLKGHTKKVTSVIYHPSQSVVFSASPDSTIRVWSVAGGNCV
QVVRAHEGGVTGLSLHATGDYLLSSSEDQYWAFSDIQTGRVLTKVTDESAGCALTCAQFH
PDGLIFGTGTADSQIKIWDLKERTNVANFPGHSGPVTSIAFSENGYYLATGAQDSSIKLW
DLRKLKNFKTITLDNNYEVKSLVFDQSGTYLAVGGSDIRVYICKQWSEVLNFTNHTGLVT
GVAFGENAQFLTSAGMDRSLKVYSL
NT seq
1518 nt
NT seq
+upstream
nt +downstream
nt
atgtctttggtttgtgcaatctccaacgaggtcccggagcacccgtgtgtctccccggtg
tccagccaggtgttcgagcgcaggctgatcgagaagtacatcgcagagaatgggaccgac
ccgatgaacggacaacccctgtccgaggagcagctcgtcgatatcaaagtgtcccatccg
attagaccaaaggctccatcagcaacaagcattcctgccattctcaagtcccttcaagat
gagtgggatgctgttatgcttcacagcttcaccctgcggcaacagctgcagacgactcgc
caagaactctctcatgcgctttaccaacatgatgctgcatgcagagtcatcgctcggctc
accaaagaggtcactgctgcgagagaagcccttgctacactcaaaccccaggctggattg
gttgctcctcaggcaatccccacctctcagccagctgcagcaggtgcgggcggagagccc
atggagatcagtgaacaggtgggaatgaccccagagatcattcagaagcttcaaaacaaa
gctaccatcctcaccacagagagaaagaagaggggaaaaactgtcccagaggagctcatt
agagcagaggatctcagcaaataccgccaagtggcctctcacgctggtcttcatagtgcc
agtgtccctggtattctggctctggatctgtgtccctcagacaccaacaaagttctcacc
ggtggagccgataagaacgtggtggtgtttgacaaaagcgacgaacagatcgtggcaact
cttaagggtcacaccaagaaggtcacctccgttatttaccatccatcccagtccgtggtt
ttctctgcatctccagacagcaccattcgtgtgtggtctgtcgccgggggcaactgtgtc
caagtggtgcgtgcccatgagggaggtgtcactggactctccttacatgctactggagac
tacctgctcagctcctctgaggatcagtactgggccttttctgacattcagactggtcga
gtcctcaccaaggttactgatgaaagtgctggctgtgctctcacctgtgctcagttccac
cccgatggtctcatttttggcactgggacagctgattcccaaatcaagatctgggacctg
aaggagcgcaccaacgtggccaacttccctggccactctggccctgtcaccagcatcgct
ttctctgagaatggatattatttggctacaggagcccaggatagctccatcaaactgtgg
gatctgcggaaactgaagaacttcaagaccatcaccctggacaacaactatgaggtgaag
tccctcgtgtttgaccagagcggaacctacctggcagttggagggtcggacatccgtgtc
tacatttgcaaacagtggtcagaggtcctcaacttcacaaaccatacaggattggtgact
ggagtggcctttggagagaacgctcagttcctgacctctgcaggaatggatagaagtctc
aaagtatacagtttgtag
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