Pungitius pungitius (ninespine stickleback): 119211565
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Entry
119211565 CDS
T07626
Symbol
nfkb1
Name
(RefSeq) nuclear factor NF-kappa-B p105 subunit
KO
K02580
nuclear factor NF-kappa-B p105 subunit
Organism
ppug
Pungitius pungitius (ninespine stickleback)
Pathway
ppug04010
MAPK signaling pathway
ppug04210
Apoptosis
ppug04218
Cellular senescence
ppug04519
Cadherin signaling
ppug04620
Toll-like receptor signaling pathway
ppug04621
NOD-like receptor signaling pathway
ppug04622
RIG-I-like receptor signaling pathway
ppug04623
Cytosolic DNA-sensing pathway
ppug04625
C-type lectin receptor signaling pathway
ppug04920
Adipocytokine signaling pathway
ppug05132
Salmonella infection
ppug05168
Herpes simplex virus 1 infection
Brite
KEGG Orthology (KO) [BR:
ppug00001
]
09130 Environmental Information Processing
09132 Signal transduction
04010 MAPK signaling pathway
119211565 (nfkb1)
09133 Signaling molecules and interaction
04519 Cadherin signaling
119211565 (nfkb1)
09140 Cellular Processes
09143 Cell growth and death
04210 Apoptosis
119211565 (nfkb1)
04218 Cellular senescence
119211565 (nfkb1)
09150 Organismal Systems
09151 Immune system
04620 Toll-like receptor signaling pathway
119211565 (nfkb1)
04621 NOD-like receptor signaling pathway
119211565 (nfkb1)
04622 RIG-I-like receptor signaling pathway
119211565 (nfkb1)
04623 Cytosolic DNA-sensing pathway
119211565 (nfkb1)
04625 C-type lectin receptor signaling pathway
119211565 (nfkb1)
09152 Endocrine system
04920 Adipocytokine signaling pathway
119211565 (nfkb1)
09160 Human Diseases
09172 Infectious disease: viral
05168 Herpes simplex virus 1 infection
119211565 (nfkb1)
09171 Infectious disease: bacterial
05132 Salmonella infection
119211565 (nfkb1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
ppug03000
]
119211565 (nfkb1)
Transcription factors [BR:
ppug03000
]
Eukaryotic type
beta-Scaffold factors with minor groove contacts
RHR (Rel homology region) Rel/Ankyrin
119211565 (nfkb1)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RHD_DNA_bind
RHD_dimer
Ank_2
Ank
Ank_3
Ank_4
Ank_5
Death
Ank_KRIT1
CCDC136_middle
Mak16
DMP19
Motif
Other DBs
NCBI-GeneID:
119211565
NCBI-ProteinID:
XP_037318459
LinkDB
All DBs
Position
2:complement(17717127..17734080)
Genome browser
AA seq
1018 aa
AA seq
DB search
MLRTRPITRATGEFGSYMEPGSLRLGVLHAEIAAVSPAGPPTSPQSTFSWQEKKNIMAAD
DHYPHPSNQIFDMDSMWDFQPFPPISQTPSLRTVDGPFLQIVEQPKQRGFRFRYGCEGPS
HGGLPGASSEKTSKTYPAVKISNYQGPARVVVQLVTALTPHPQLHAHSLVGKQCDKGICV
TDLQPKDSTISFPNLGILHVTKKNVAKTLEERMVEATRLGYNCGVSIHPDIDVLQGEVRV
PRELTDHQRNVISSVASLQAKEMDLSVVRLMFTAFLPNSDGGFSRRLEPVVSEPIYDSKA
PNASNLKIVRMDRTAGCVSGGEEVYLLCDKVQKDDIQVRFYEEDDSGLTWEAMGDFSPTD
VHRQFAIVFKTPKYRDQNLQKPTSVLVQLKRKSDNETSEPKPFTYHPQIIDKEEVQRKRQ
KTLPNFQDFSGQGGGGLYRGGGGGGGGGGGGRGPAGGGGPGSAGGGGYYHGFSTYNYGGA
GGGGGGGGGGFSTGYSAGLGGGGEGAAAIKHASEGNEAADDEHPNDDSGLAVGLSATTQL
RGPVAGEGPKEGGVEGEEPESATDVQCGVQLEALFQYSVTGDSAFLLATQRQLMSAQDED
GDTGLHLAVLHSQKEALRSLTQVVSALPGEEVLNMRNHLYQSPLHLAVITQQREAVEALL
LAGADPTLTDRHGNTLLHLASRLEGGGGGMVQFLLQHREIRELLEHTNTAGLCAIHLAVL
ANQLSSLRELLEGGADVEAQERSCGRTALHLATERDNVSLAGCLLLEGNAKVDSFTFNGS
TPLHIAAGRDSVKLTALLMAAGADPQKENFEPLFFREEDCCNEEKEDEDEGYIPGTTPLN
MAATTRVLELLHGKEYKPKSLQRPFIPAQGDLASLDVDVKQQVCCALESEGCWEKLAHSL
GLGILNTAFGLSPSPAKTLLQSYEVSGGTVRELLEGLRSVGECRALNVLEEVLRHHDEKE
EVLPRPGDRGEEEEEEEEEEEEEEEETQSSDGSRVQDLKADIRIDSGVCDSGVELSTA
NT seq
3057 nt
NT seq
+upstream
nt +downstream
nt
atgttgagaacccgaccgataacccgagccaccggtgaattcggctcgtatatggaacct
ggaagtcttcgcttaggtgtacttcatgcggaaattgctgcagtttcacccgctggaccc
ccaacttcaccccagtccacgttttcttggcaggaaaaaaaaaacattatggctgctgac
gaccactaccctcatccctccaaccagattttcgacatggattccatgtgggacttccaa
cctttccccccaatttctcagaccccctctctgcggacagtggacggacccttcctgcag
atagtggagcaaccgaaacaacggggcttcaggttcaggtacggctgtgaaggtccgtct
cacggaggcctgccaggtgcctccagcgagaagaccagcaagacctaccccgccgtcaag
atcagtaactaccagggtccggcccgggtggtggtccagctggtgacggcgctgaccccc
caccctcagctgcacgcccacagtctggtgggaaagcagtgcgacaaagggatctgcgtc
accgacctgcagcccaaagactccaccatcagttttcccaacctgggcatcctccacgtg
accaagaagaacgtggccaagaccctggaggagaggatggtggaggccacccggctgggg
tataactgcggcgtctccatccaccccgatatcgacgtcctgcagggggaggtccgagtc
ccccgagagctcaccgaccaccagcgcaatgtgatcagcagcgtggcgtctcttcaggct
aaagagatggacctcagcgtagtgcggctcatgttcacggcgttcctccctaacagcgac
ggaggtttctccagacgactcgagcccgtcgtgtcggaaccgatctacgacagcaaggca
cctaacgcctccaacctgaagatcgtgaggatggatcggaccgctggctgcgtgagcggt
ggagaggaggtctacctgctctgtgacaaggtccagaaagatgacatccaggtccggttc
tatgaagaagatgactcggggttgacctgggaggcgatgggagatttctcacctacagat
gtccacagacagttcgccattgtgttcaagactccaaagtatcgagaccagaacctccag
aaaccgacgtcagttctcgtccagctgaagaggaagtctgataacgagaccagcgaaccc
aaacccttcacctatcaccctcagatcatagacaaggaggaggtgcagaggaagagacag
aagacgttgccaaacttccaggacttcagcgggcaaggaggaggtggtctgtaccgagga
ggaggaggaggaggaggaggaggtggtggtggacgaggtcctgctggaggaggaggacct
ggctctgctggaggaggaggttactaccatggttttagcacctacaactatggcggagca
ggaggaggaggaggaggaggaggcggaggtttctccacaggatactcagctggtctgggt
ggaggaggagaaggagccgccgccatcaaacacgcctccgagggcaacgaggcagcggac
gacgaacatccgaacgacgattcggggttggccgttgggctgagcgctacaacccagctg
agaggcccggtggcgggggaggggcctaaggagggaggggttgagggggaggagccagaa
tcagccacagatgtgcagtgcggcgttcagctggaggccctgttccagtactcggtcact
ggagactcagccttcctattggccacgcagcgtcagctgatgagcgcacaggacgaggac
ggagacactgggctccacctggcggtcctccacagccagaaggaggcgctgaggagtctg
actcaggtcgtctctgctctgcccggcgaggaggtgctcaacatgaggaaccatctctac
cagagtcctttgcacctggccgtgatcacacagcagagggaggcagtggaggcgctgcta
ttggcgggtgccgacccaacgctgacagatcgtcatggcaacacgctgctccacctggcg
tccaggctggaaggaggaggaggggggatggtgcagtttctactgcagcacagagagatc
agagaactgctggaacacaccaacacagctggtctgtgtgcgatccacctggcggtcctg
gccaatcagctgtcgtctctcagggagctgctggaaggcggggctgacgtggaggctcag
gagcgcagttgcggacggaccgccctccacctcgccaccgagagagacaacgtgtcgctg
gccggctgcctgctgctggagggaaacgctaaagtggacagcttcaccttcaatggctcc
acccccctgcacattgctgcaggacgagactccgtcaagctgaccgctctcctgatggcc
gcaggcgcagaccctcagaaggagaactttgagccgctcttcttcagggaggaggactgc
tgcaatgaagaaaaggaggatgaagatgaaggctacatcccaggaaccactcctctcaac
atggccgccaccactcgggttttggagcttctgcatggtaaagaatacaaaccaaaatct
ctacaaagacccttcatacctgctcaaggcgatctggcgagtctggacgtggacgtgaag
cagcaggtgtgttgcgccttggagagtgaaggatgttgggaaaaactggctcacagtctg
ggcctcgggatcctcaacacagccttcggtctgagcccttctcctgccaaaacactgctg
cagagctacgaggtttcaggcgggacggtcagggaactgctggagggtctcaggtcagtt
ggcgagtgcagagcgctgaatgtcctggaggaggtgctgcgtcaccacgacgagaaggag
gaggtgctgcctcgccctggcgacaggggggaggaggaagaagaggaggaggaagaagag
gaggaggaagaagaggagacgcaatcgagtgacgggtctcgggttcaggacctgaaggcg
gacattcggattgacagcggcgtctgtgacagcggggtggagctctccacggcgtga
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