Pungitius pungitius (ninespine stickleback): 119211591
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Entry
119211591 CDS
T07626
Symbol
upf3b
Name
(RefSeq) regulator of nonsense transcripts 3B
KO
K14328
regulator of nonsense transcripts 3
Organism
ppug
Pungitius pungitius (ninespine stickleback)
Pathway
ppug03013
Nucleocytoplasmic transport
ppug03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
ppug00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
119211591 (upf3b)
03015 mRNA surveillance pathway
119211591 (upf3b)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ppug03019
]
119211591 (upf3b)
Messenger RNA biogenesis [BR:
ppug03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
119211591 (upf3b)
mRNA cycle factors
P-body specific factors
119211591 (upf3b)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Smg4_UPF3
RRM_1
Motif
Other DBs
NCBI-GeneID:
119211591
NCBI-ProteinID:
XP_037318505
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All DBs
Position
2:19539339..19542661
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AA seq
476 aa
AA seq
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MKEDKENARPKERKVEINCDDGEKTEKSKEKKEAMTKIVIRRLPPSLTKEELEEQLQPLP
EVDYLEFFSNDASLYPHLFARAYINFKNQEDIVLFRDRFDGYVFIDSRGQEYPAVVEFAP
FQKTSKKRSKKRDTKCGTIDEDPDYKKFLEFYNGDDDKLASTPETLLEEIEAKSKELVAK
KTTPLLDFLKNKQRIREEKKEERRRRELERKRQREEERRKWREDDRRKRKEAEKTKRHEK
PLEKDRDQVKEEPKIKLLKKPERCDDADSENPKEKIKKPEWQNKEDRSMGGADHKRRQHI
ENKEDRGRKGDEEGRKEFRERDLERDREREKERLQREKERVRRQTENRRRRRERQDGETL
CRRRDEDVKKDKERAKEKKRGENLGDSSHSERPERLTKDYRKDESSKRERLRNKDRPAIQ
LYQPGTRSRTRGGGGGGGGGGGGGGGGGAAAAGGDSNSTDRKPDTESEKVADKGED
NT seq
1431 nt
NT seq
+upstream
nt +downstream
nt
atgaaggaagacaaggaaaacgctcggccgaaggagcgaaaggtggaaataaattgtgac
gatggagaaaagacggagaagtcgaaggaaaagaaagaggccatgacaaagattgtgatc
cggcggttaccaccaagtctgaccaaggaggagctggaggagcagttacaacctctcccg
gaggtggactaccttgagtttttctccaatgacgccagcctttatcctcacctctttgcg
agggcatacatcaattttaaaaaccaagaggacatagttctgttcagagatcgatttgat
ggatatgtgttcattgacagcagaggacaggagtatcctgccgttgtggaatttgcacct
tttcaaaagacttccaagaaaagaagtaagaaaagggacacaaaatgtggaacaatcgat
gaagatcctgattacaagaagtttctggaattttacaatggcgatgatgacaagttggca
tcaacaccagagacactgttggaagagattgaggcaaaatcaaaggaacttgtagctaaa
aaaacaactcctctgctcgacttcttgaagaataaacagagaatcagggaggaaaagaaa
gaagagagaagaaggagggagcttgagcgcaagcggcaacgtgaggaggagcgccgtaag
tggagggaggacgaccgaaggaagcgcaaagaagcagagaaaaccaagaggcatgagaaa
cccctggagaaggacagggaccaagttaaagaagaaccaaagattaagcttttgaagaag
ccagagagatgtgatgatgctgattctgagaaccccaaggaaaagatcaagaaaccggaa
tggcaaaataaagaagacagatccatggggggcgccgatcataagaggcgtcaacacatt
gaaaataaggaggatcgaggaaggaaaggggacgaggaagggaggaaggagttcagggag
cgtgacctcgaacgagaccgggagcgggagaaggagcggctgcagagagagaaggagcgc
gtccggcggcagacggaaaatcggcgtagaaggagagagcgtcaggatggagaaacgttg
tgcaggaggagggacgaggatgtcaaaaaagacaaagagcgtgcaaaggagaagaaaagg
ggcgaaaacctcggagactcttctcactctgagaggccagagaggctgacgaaagactac
aggaaggacgaaagtagtaaaagagagcgcctgcgaaataaggaccggcctgcgattcag
ctgtaccagcctggaaccagaagtcgcactcgaggtggaggtggaggaggaggaggagga
ggaggaggaggaggaggaggaggagcagcagctgcaggaggggattccaactctaccgac
agaaagccagatactgagagcgagaaagtggctgacaaaggagaggattga
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