Pungitius pungitius (ninespine stickleback): 119211617
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Entry
119211617 CDS
T07626
Symbol
lrfn1
Name
(RefSeq) leucine-rich repeat and fibronectin type III domain-containing protein 1
KO
K16354
leucine-rich repeat and fibronectin type-III domain-containing protein 1
Organism
ppug
Pungitius pungitius (ninespine stickleback)
Brite
KEGG Orthology (KO) [BR:
ppug00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
ppug04515
]
119211617 (lrfn1)
04990 Domain-containing proteins not elsewhere classified [BR:
ppug04990
]
119211617 (lrfn1)
Cell adhesion molecules [BR:
ppug04515
]
Immunoglobulin superfamily
SALM family
119211617 (lrfn1)
Domain-containing proteins not elsewhere classified [BR:
ppug04990
]
Fibronectin (FN) domain-containing proteins
Fibronectin type III domain-containing proteins
119211617 (lrfn1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LRR_8
Ig_3
I-set
LRR_4
LRR_5
Ig_2
ig
fn3
LRR_9
Ig_DSCAM-DSCAML_C
C2-set_3
Sp38
Motif
Other DBs
NCBI-GeneID:
119211617
NCBI-ProteinID:
XP_037318565
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All DBs
Position
3:complement(11578168..11661882)
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AA seq
762 aa
AA seq
DB search
MDRLVLCMLLSAALAKGYSCPGRCICQHLSPTLTLLCAKTGLLFVPPTIDRKTVELRLTD
NFITIIRRKDFYNMTSLVHLTLSRNTISQITPHSFVGLRSLRALHMDGNRLSVIKTDHFK
GLINLRHLILGNNQIHQVAPTSFDEFVSTIEDLDLSSNNLRTLPWEAIARMANINTLTLD
HNLIDHIGPGTFTLLTKLVRLDMTSNRLQKLPPDSLFQQAQVLSDPKDFSSSTLAVSFGG
NPLHCNCELLWLRRLTREDDLETCASPDNLMDKYFWSIQEEEFICDPPVITKHLSTKPYV
MEGQGVTLKCKAVGDPDPEIHWRSPDGKLVHNNSRTILYDNGTLDILITTLKDSGAFNCV
ASNAAGLATAAVEINMIPLPLFVNNTGHMREDPGLSDITTSSKSGNDTKGYDKQDRRVMV
SELTSSSAVIRWPSERHIPGIRMYQIQYNSTADDTLVYRMIPSTSKNFLINDLAAGREYD
LCVLAVYDDGITSLTATRVVGCVQFHTASEVSQCRFMHSQFLGGTMIIIIGGIIVASVLV
FIIILMIRYKAYSGPEDSKTKVSSSMHSQTNGSQQRLPRSVSKQPSDDGQREAHAPKECM
ALVLRVDNEKKENPAAAASAAAAALEVELPPVSVDKVQRRSSLDAQRSGPPSEDTQTDSS
LTGSTMSLCLIGPNAGTKEAPRLKDKKGTLANMGLLPNELARTRHRFSFDGGDYSIFQSH
SYPRRARTRWHKSTNQLNMESSPLANRRVTFSSTEWMLESTV
NT seq
2289 nt
NT seq
+upstream
nt +downstream
nt
atggaccgcctggttctttgcatgctgctgagtgcagctctggcgaaggggtacagctgc
cccggccgctgcatctgtcagcacctctcaccaactctgactctgctctgtgctaagacc
ggtctgctgttcgtgccgcccacaatcgaccgcaagacagtggagctgcgactcacggac
aacttcatcaccatcatccgcaggaaagatttttacaacatgactagtttggttcacctg
accttgtcccggaacaccatcagccagatcaccccccactccttcgtcggccttcgatcc
ctgcgggcgctgcacatggatgggaatcgcctcagtgtgataaagactgaccactttaag
ggcctcatcaacctgcggcacctcatcctcgggaacaaccagatccaccaggtggcccct
acctcctttgatgagtttgtttccaccatagaggacttggatctttccagtaataacctg
cgcaccctcccctgggaagccatagccagaatggccaacataaacacgcttaccctggac
cacaacctgattgaccatattggacctgggactttcacgttgctcaccaaactggtccgc
ctggacatgacttctaacaggctgcaaaagctgccgcccgacagcctattccagcaggca
caggtcctatccgaccccaaggacttcagctcttcaactctggcagtgagtttcggtgga
aaccctcttcactgtaactgcgagctgctgtggctgcgcaggttgacaagagaggatgat
ctggagacctgtgcctcgccagataacctcatggacaagtatttctggtccatccaagag
gaggagtttatctgcgatcccccggtgatcaccaagcatctttccaccaagccctacgtg
atggaggggcagggtgtgactctgaaatgcaaagcagtgggggatccagacccagagatt
cactggcggtccccagacggcaagctggtgcataacaactcccgcaccatcctgtacgat
aatggcacccttgatattctcatcaccacgctaaaggacagcggcgcattcaattgtgtg
gcgtccaatgccgcaggcctcgccacagctgctgtcgagatcaacatgatccctttaccc
ttgtttgttaacaacacgggccacatgcgcgaagaccccggcctctcagacatcaccacc
tcctccaaatctggcaacgacaccaagggctacgacaagcaggacaggagggtgatggtc
agcgagctgacctcctcctccgccgtgatccgctggccttctgagcgccacatccccggc
atcaggatgtaccagattcagtacaacagcacagcggatgatactttggtgtacagaatg
atcccgtctaccagcaagaacttcctaatcaatgatctggccgcaggacgagagtatgac
ctttgtgtgctggcggtttacgacgacggcatcacatctttaacagccacgcgcgtggtg
ggctgcgtgcagttccacacggccagcgaggtcagccagtgccgcttcatgcacagccag
tttctgggaggcactatgatcatcattatcggtggtataattgtcgcttcggtgctggtg
ttcattatcatcctgatgatccgttacaaggcctacagcggcccagaggacagcaagacc
aaggtcagctccagcatgcactcccagaccaacggcagccagcagcggctcccgcgctcc
gtctccaagcagccgtcggacgacggccagcgcgaagctcacgcgcccaaagagtgcatg
gcgctggtgctgagggtggacaatgagaagaaagagaacccagccgccgctgcctcagcc
gccgccgccgccctggaggtggagctgccgcccgtgagcgtagacaaggtgcaaagaaga
agcagcctggatgcgcagcgctccggccccccgtcggaggacacacagacggacagtagc
ctgacgggctccaccatgtccctgtgtctcataggccccaacgccggtaccaaggaggct
cccaggctcaaggacaagaaaggtactctggccaacatgggattgctccccaatgagctg
gcacgaactaggcacagattctcttttgacggaggggattactccatttttcagagtcat
agttacccacgcagagcgaggacgaggtggcacaagtccaccaaccagctaaacatggag
tcctcgccgctcgccaacagaagggtgacgttcagcagcactgagtggatgctcgaaagc
acagtttga
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