Pungitius pungitius (ninespine stickleback): 119212553
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Entry
119212553 CDS
T07626
Symbol
ercc4
Name
(RefSeq) DNA repair endonuclease XPF
KO
K10848
DNA excision repair protein ERCC-4 [EC:3.1.-.-]
Organism
ppug
Pungitius pungitius (ninespine stickleback)
Pathway
ppug03420
Nucleotide excision repair
ppug03460
Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:
ppug00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
119212553 (ercc4)
03460 Fanconi anemia pathway
119212553 (ercc4)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
ppug03032
]
119212553 (ercc4)
03400 DNA repair and recombination proteins [BR:
ppug03400
]
119212553 (ercc4)
DNA replication proteins [BR:
ppug03032
]
Eukaryotic type
DNA Replication Termination Factors
Other termination factors
119212553 (ercc4)
DNA repair and recombination proteins [BR:
ppug03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
Other NER factors
119212553 (ercc4)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ERCC4
Motif
Other DBs
NCBI-GeneID:
119212553
NCBI-ProteinID:
XP_037318967
LinkDB
All DBs
Position
21:15843362..15850611
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AA seq
902 aa
AA seq
DB search
MAAPLLEFETEMFLNVFECDGLLVVAEGLGIDRILLQFMRVYSEQGSLVLLLNTTTPEQE
YFTEQLRVEGVTHLPRTVTSEVSSAERYNVYTEGGVLFVTSRILVVDFLTDRIPAHLISG
ILVYRAHKIIESFQEAFILRLYRQKNKTGFIKAFTDKATSFSSGFCQVERVMRNLFVKKL
YLWPRFQASVNTALDRHKPEVVELHVSLTPAMRAIQSSILDIMSACLKELKRYNPTLEAE
DLSVENTLGSAFEKTIRHYLDPLWHQLGAKTKALVQDLKVLRVLLLYLTQYDCVTFLNLL
ESLRSSQKNFGSNSGWLFLDSSTSMFVNARARVYRTPESKKKLKVGAEEEKAKSSSASGV
KRELVLENSPKWEALTEVLEEIERENKSSQQEPGRVLICASDDRTCAQLQQYIRHGSDWM
LNRLYARTVGQRDSSSSSAAAAASTDLESHKRGPGWPKNGAKGKEPAQKKKSAKSKKRPS
LTLTQMMGKDEQDKAAGTGSGGDEGDPMEEDEEEEEQLRLDLSSDAYYGVLKEPLTVLHP
LKGLTDPHSLTRVLHEVEPSFVVLYDAEIGFVRQLEIHKASRPGKTLRVYFLIYGGSTEE
QKYLTALSKEKKAFERLIREKATMVIPEEREGRGDTNLDLARNLEPANATTNTRKAGGQE
QPKEPSRIIVDMREFRSELPSLLHRRGLDIEPVTLEVGDYILTPDTCVERKSVSDLIGSL
QSGRLYAQCLSMTRYYKKPVLLIEFDPAKPFSLMARSDFRHEISSNDVSSKLTLLTLHFP
RLRILWCPSPHATAELFLDLKQGRCEPDAAAAQAVTAESDMVAESAELYNPGPYDFLLKM
PGVNVKNYRAVVKNADNLADVCKLGQDKLAEILGNANNGRLLYEFLHNVADVPAPVHKAK
HT
NT seq
2709 nt
NT seq
+upstream
nt +downstream
nt
atggcggcgccgctgctggagtttgagaccgagatgtttctgaacgtgtttgagtgcgac
gggctgctggtggtcgcggagggcttgggcatagaccgcatcctgctgcagttcatgcgg
gtctactcggagcagggcagcctggtcctgctgctcaacaccaccacaccggaacaggag
tatttcacggagcagttgcgagtggaaggtgtgacccacctgcccaggaccgtgaccagc
gaggtcagcagcgctgagcgctacaacgtctacaccgagggaggcgtgctgttcgtcacc
agcaggatcctggtggtcgacttcctcaccgaccgcatccccgctcatctcatatcaggc
atcctggtgtatcgggctcataaaatcatcgagtcgtttcaggaggccttcatccttcgt
ctttacaggcagaagaataagacgggcttcattaaggccttcactgacaaagccacgtcc
ttctcctcgggcttctgccaggtggagcgcgttatgagaaacctctttgtcaagaaactc
tacctttggccgaggtttcaagcatcagtgaacacggcgctggaccgccacaagccggag
gtggtggagctccacgtgtcactgactcctgctatgagggccatccagagctccatcctg
gatatcatgagcgcctgtctgaaggagctgaaacgctacaaccccactctggaggctgag
gacctctcagtggagaacacgctaggcagcgccttcgaaaagactatccgtcactacctg
gaccccctgtggcaccagctgggagcaaagaccaaggccctggtccaggacctgaaagtg
ctgagggtcctcctgctctacctcacacagtacgactgcgtcaccttcctcaatctgctt
gagtcgctgcgctccagtcaaaagaactttggatccaattcagggtggttgttcctcgac
tccagtacctccatgtttgtgaatgccagggccagagtgtaccgcacccccgagagcaag
aagaaactcaaagtgggagcggaggaggagaaagcaaagtcttcctctgcctcaggggtg
aagcgggaactagtgctggaaaacagccccaagtgggaggccctgacggaggtcctggag
gagatcgagagggagaacaagagctctcaacaggaaccaggtcgagtgctgatctgtgcc
agtgatgaccggacgtgtgcccagcttcagcagtacatcaggcacggctctgactggatg
ctcaaccgactgtacgcccgcacagtcggtcagcgggactcttcttcttcttctgcggcg
gcggcggcgtccacggatcttgaatcgcacaaaaggggccccggctggcctaagaatgga
gccaaggggaaggagcccgctcagaagaaaaagtccgccaagagtaagaaaaggccatcc
ttgaccctgacccagatgatggggaaggacgagcaggacaaagcggcggggacgggcagc
ggcggggatgagggcgacccgatggaggaggacgaagaggaggaagagcagctgaggctg
gatttgtcgtcggacgcctactacggtgtcctgaaggagccgctgaccgtccttcacccg
ctcaaaggtctcacggacccccacagcttgacccgggtgctgcacgaggtggagcccagt
ttcgtggtgctctacgacgccgaaatcggttttgtccgccagctggagatccacaaagct
agccggcctgggaagaccctccgggtgtacttcctcatctatggaggctcgacagaagaa
cagaagtacctgacggcgctgtccaaggaaaagaaggccttcgaacgcctgatcagagaa
aaagctaccatggtcattcccgaagagagggaggggcgaggagacaccaatctggacctc
gctaggaatctagagccggccaatgccaccaccaacacccgcaaagcaggaggccaggag
cagcccaaagagccgtcccgcatcattgtggacatgcgggagttccgcagcgagttgccc
tccctgttgcaccgccgggggctggacatcgagcccgtcaccttggaggtgggggactac
atcctgacgccggacacgtgcgtggagcgcaagagcgtcagcgacctgatcggctcgctg
cagagcggccgcctttacgcccagtgcctctccatgacccgctactacaagaagccggtg
ctcctcatcgagttcgacccggcgaaacccttctccctgatggcccggtcggatttccgt
cacgagatctcgtcgaatgacgtgtcctccaaactcaccttgctcaccttgcacttcccc
cggctgcgtatactctggtgcccgtccccgcacgccacggcggagctcttccttgacctg
aagcagggtcgctgcgaacccgacgccgcggccgctcaggcggtcaccgccgagtcggac
atggtggctgaatcggcagaactctacaaccccggaccttatgacttcctgttgaaaatg
cccggggtcaatgtgaaaaactacagggccgtcgtgaaaaatgcagacaacctggcagat
gtatgcaaactgggccaagacaagctggcagaaatacttgggaacgccaacaacggccgc
ttgctgtacgagttcctgcacaacgttgcagacgtgccggctcccgtgcacaaagccaag
cacacatga
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