Pungitius pungitius (ninespine stickleback): 119212741
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Entry
119212741 CDS
T07626
Symbol
msh2
Name
(RefSeq) DNA mismatch repair protein Msh2
KO
K08735
DNA mismatch repair protein MSH2
Organism
ppug
Pungitius pungitius (ninespine stickleback)
Pathway
ppug03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
ppug00001
]
09120 Genetic Information Processing
09124 Replication and repair
03430 Mismatch repair
119212741 (msh2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ppug03400
]
119212741 (msh2)
DNA repair and recombination proteins [BR:
ppug03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
Mismatch and loop recognition factors
119212741 (msh2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
MutS_V
MutS_III
MutS_IV
MutS_I
MutS_II
AAA_27
Motif
Other DBs
NCBI-GeneID:
119212741
NCBI-ProteinID:
XP_037319354
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Position
21:complement(6891899..6905344)
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AA seq
935 aa
AA seq
DB search
MAVHPKHNLSLDSPAEHGFLSFVFSMPEKPDTTFRIFDRNDYYTVHGKDAIFAAKEVFKT
NGVIKYLGSGTRKLESVVLSKLNFEAFVKDLLLVRQYRVEVYKNHSRSSKEHDWKIDYKA
SPGNLTQFEEILFGGGTGAVGCTGVVAVRLATGADGQRVVGFGYVDAAQKTMGVCEFPDN
EIFSNLESILVQISPKECLLAQGESNTDSVKLREVVQRGGILISDRKRAEFSSKNMIQDL
NRLLRAKRGETVASNTLPELDKQVAMSCLAAVVRFLDLLSDESNFNSFSLTTLDLGQYMR
LDNAAVRALNLFQGSPDDISGAHSLAGLLNKCRTPQGQRLVNQWIKQPLMDKTKIEERLD
LVESFVCDSELRQTCQEDLLRRFPDLHRLAKKFHRYSASLQDCFRVYQAVSHIPALVSAL
ERYCGSYQVLLEAVFVAPLRDLQTDFVKYQEMIETTLDMNQIDHHEFLVKASFDPALSAL
RENMDALEKSMQAVLSGAARELGLDAGKTVKLESNAMLGFYLRVTCKEEKSLRNNKKFTA
LDVQKNGVRFTNSKLSSLNEEYTKNREEYVEAQNAIVKEIINIASGYVDPLQTLSDVTAQ
IDAVASFAVASVSAPVPYVRPRLLADGCRRMELRQARHPCMETDADTAFIPNDMSFVQGE
KDFYIITGPNMGGKSTFIRQVGVIALMAQIGCFVPCEKAELSVIDSILARVGAGDSQVKG
VSTFMSEMLETAAILRSATENSLIIIDELGRGTSTYDGFGLAWAISEHIATEIGCFCLFA
THFHELTALAAQQPAVHNLHVTALTSHNTLTMLYRVKSGVCDQSFGIHVAELACFPPSVI
AMAKEKAEELEEFQEPAGEKSEEEKEPEAKRRRKDRQVGENLIQDFLEKAKSLPAATMSE
DEVKDALRKMKQELVAKKNTYIKEILSHCVLAKTA
NT seq
2808 nt
NT seq
+upstream
nt +downstream
nt
atggcggtgcatccgaaacataacctgtctctggacagtccggccgagcatggctttcta
agcttcgttttctccatgccggagaaaccggacactacttttaggatattcgaccgcaac
gactactacacggttcacggaaaggacgccatattcgcggcgaaggaagttttcaagacg
aatggggtcatcaaatatttgggctcagggacccgcaagctggagagtgtggtgctgagc
aagctgaactttgaggcctttgtgaaagacctgctgcttgtgaggcagtacagagtagaa
gtgtacaagaaccacagcaggagcagcaaggagcacgactggaagattgactacaaggcc
tctccgggaaacttgactcagtttgaggagatcctgttcggtggcggaaccggagcagtg
ggttgtacgggagtcgtggccgtgcggctcgccaccggagcagatggacagcgagtggtt
gggttcggctatgtggacgcggcccagaagacgatgggagtgtgcgagttcccggacaat
gagatcttctcgaatctggaatccattctagttcaaatcagtcccaaagagtgtctgttg
gctcagggcgaaagcaacacagacagcgtcaaactacgggaggtggtacaacgtggcggc
atactgatctcggaccggaagagggcggagtttagcagcaaaaatatgatccaggatctg
aacagactgctaagggccaagagaggagagactgtggcgagcaacacactgcccgagctg
gacaaacaggtggccatgtcatgcttggctgcagtggtgcgtttcctcgatctgctctct
gacgagtccaacttcaactcattcagtctcaccacactggacctgggtcagtacatgagg
ctggacaatgctgcagtgagggctcttaacctattccagggatcacctgacgacatcagc
ggagctcattcactggctggcctactgaacaagtgtcgtaccccgcagggccagcggctt
gttaaccagtggatcaaacagccactcatggacaaaaccaaaatagaggaaaggctggac
ctggtggagagcttcgtttgtgactccgagctcaggcagacttgtcaggaggacttgcta
cggcgctttcctgatcttcaccgtctggccaagaagttccaccgttactccgcatcactc
caggactgctttcgcgtctaccaggccgtgagccacatcccggccctcgtctcggccctg
gagagatactgtggtagctaccaggttctgttggaggcggtgttcgtcgctcctctcaga
gatctgcaaacagactttgttaagtaccaggagatgatcgaaacgacgctggacatgaac
cagattgaccaccatgagtttctggtgaaggcatcattcgacccagcgctgagtgcgctg
agagaaaacatggacgctctggagaagagcatgcaggcggtgctcagcggtgcagccaga
gaactaggtctggatgccggtaagacggtgaagctggagtccaacgccatgctgggtttc
tacctgcgagtcacctgcaaggaggagaagagtctgaggaacaacaagaaattcaccgcc
ctggacgtccagaagaacggagtgcgcttcaccaacagtaagctgagctctctgaatgag
gagtacacaaagaaccgagaggagtatgtggaggcccagaatgccattgtcaaagagatc
ataaacatcgcctcaggctacgtggatcccctccagacgctgagcgacgtgacggcgcag
atagacgctgtggcgagtttcgccgtggcgtcagtatccgctcccgtgccgtacgttcga
cccaggctgttggcggacggctgcaggcgcatggagctgcggcaggccagacacccctgc
atggagacggacgcagacactgccttcattcccaacgacatgtccttcgtccagggagag
aaggacttctatattataacgggcccaaatatgggtggcaagtcgacatttatccgccag
gtgggggttattgctctgatggctcagattggctgctttgtgccatgcgaaaaggcggag
cttagtgtcattgacagcatcctggccagggtgggagcaggagacagccaggttaaagga
gtgtccacattcatgtctgagatgctggagacggctgccatcctgcgctcggccacggag
aactcgctaatcataattgacgagctcggccgaggcacgtccacatacgacggcttcggc
ctggcgtgggcaatcagcgaacacatcgccaccgaaatcggctgcttctgtctgttcgcc
acgcacttccacgagctgacggcactggcagcgcagcagcccgctgtccacaacctgcat
gtcacggcactgacctcccacaacacgctcaccatgctgtaccgggtcaaatcaggtgta
tgtgatcagagttttggaatccacgttgccgagttggcgtgcttcccaccatcagtgatt
gctatggcaaaggagaaggcagaggaactggaggagttccaggagcctgcaggggagaag
tctgaggaggagaaggagccagaggccaagagacgacggaaagacagacaagttggggag
aacctgatccaggacttcctggagaaagccaaatcccttcctgctgccaccatgagtgaa
gacgaggtgaaggatgccctcaggaaaatgaagcaggaacttgttgccaaaaagaacacc
tatatcaaagagatcctttcacattgtgttctggcaaaaacagcttga
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