Pungitius pungitius (ninespine stickleback): 119213308
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Entry
119213308 CDS
T07626
Symbol
pms2
Name
(RefSeq) mismatch repair endonuclease PMS2
KO
K10858
DNA mismatch repair protein PMS2
Organism
ppug
Pungitius pungitius (ninespine stickleback)
Pathway
ppug03430
Mismatch repair
ppug03460
Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:
ppug00001
]
09120 Genetic Information Processing
09124 Replication and repair
03430 Mismatch repair
119213308 (pms2)
03460 Fanconi anemia pathway
119213308 (pms2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ppug03400
]
119213308 (pms2)
DNA repair and recombination proteins [BR:
ppug03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
MutL homologs
119213308 (pms2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
MutL_C
DNA_mis_repair
HATPase_c_3
HATPase_c
Motif
Other DBs
NCBI-GeneID:
119213308
NCBI-ProteinID:
XP_037320420
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Position
21:complement(1263181..1267388)
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AA seq
834 aa
AA seq
DB search
MSDACSEPAGAIKAIDKHSVHQICSGQVVLTLATAVKELVENSIDAGATSVDVRLKEYGA
ELVEVSDNGKGVEEANFEGLTLKHHTSKLRDFSDLIRVETFGFRGEALSSLCALSVLGVV
TCHESSQVGTKLAFDHKGHLVQQCPHPRQQGTTVSLQQLFCTLPVRHKEFQRNIKKEYAK
MIHVLQAYCIISTGVRITCSNQTMQGKRSTVLSTTGSPSMRDNIGAIFGPKQIQSLMPFQ
QVSPAENVIEEYGLKDADLPKQPFSMAGFVSRGDHGVGRSATDRQFFFINSRPCDPLKVT
KLVNEVYHTYNRHQYPFVALNIIVASECVDVNVTPDKRQIFLQEEKLLLATVKTSLIAMY
EAGVNKISLNFTPIPRTNDHCPAVPSKPGEHAAAAPRSSKSSLNLAALKAAFSSPHASSC
GNAANAAAGGPAQKTLRSFFKHSGKAPLRLPAVASPSRPATAPPGSPPAGGGEPDGFRYG
RMSCSGDGSEKDGASSDCDVAAATPPDARRSGPEARCPGPTDAVKRETSASPEPPRVPTQ
QGASNEGRAASPDAKRTRTDERRPPAGHEADTNPAVDAPVFLQKRSVPLQFSLQELAGRV
KRLQELQRQRAGDDLRYRRFRAKIDPGENQSAEAELSKEISKDMFKEMEIIGQFNLGFII
AKLNADIFMIDQHATDEKYNFEMLQQHTVLQGQRLILPQKLHLPAVSENVLLENMEIFQK
NGFEFLVDEDAQVMERVKLVSLPTSKNWTFGPADIEELIFMLSDSPGVMCRPSRVRQMFA
SRACRKSVMIGTALNVAEMKKLLVHMGEIDHPWNCPHGRPTMRHLANLDIISQE
NT seq
2505 nt
NT seq
+upstream
nt +downstream
nt
atgtctgatgcttgctctgaacctgcaggagccataaaggccatcgacaagcactcggtg
catcagatctgctcgggacaggtggtgctgactttggccactgctgtgaaagagctggtg
gagaacagcatcgacgcaggtgctactagtgttgacgtccggctgaaggagtacggagct
gaactcgtggaagtgtcggacaacggcaaaggggtcgaggaggccaactttgaaggactg
acgttgaagcatcacacgtcgaagctgagggacttctctgatctcatccgcgtggaaacg
tttggcttcagaggggaagccctcagctccttgtgcgctctgagcgtcctcggtgtggtg
acgtgccacgagtccagccaggtgggcaccaagctggcgtttgaccacaaaggccacctg
gtgcagcagtgcccccacccccgacagcaaggcaccacagtcagcctgcagcagctcttc
tgcacgctgcccgttcgacacaaggagttccagcgcaatattaagaaggagtatgccaaa
atgatccatgtcctgcaggcctactgtatcatctctactggagtgcgcatcacctgctcc
aaccaaaccatgcagggaaagcgcagcacagtcctcagcaccaccggcagcccgagtatg
agggacaacatcggggccatatttggaccaaaacagatacagagtcttatgccttttcag
caagtgtctcctgcagagaatgttattgaagaatacggactcaaagatgcagatctaccc
aagcagccttttagcatggcggggttcgtgtcccgaggagaccacggtgttgggagaagt
gccaccgacaggcagttctttttcattaacagccggccttgtgatcctctgaaggtgact
aaacttgtgaatgaagtgtatcacacgtacaaccgacaccaatatccatttgtcgccttg
aacataattgttgcctctgagtgtgtggacgtgaacgtgacacccgacaaacggcagatc
ttccttcaggaggagaaactcctgctggctactgtgaagacctccttgatcgccatgtac
gaggctggcgtcaataagatcagcctgaactttacacccattcccagaaccaatgaccac
tgtcctgctgtcccgtccaaacccggcgagcacgcggcagcagcacctcgcagctcaaag
tcgtccctgaacctggccgccctgaaagccgctttctcaagtcctcacgcctccagttgt
gggaacgcggctaacgctgcggccggcggccctgcacagaagacactacggtcctttttc
aagcacagcggcaaagctcctctccgcctcccagctgtcgcatctccttcaagacctgcg
acagccccccccgggagccccccggcgggggggggcgagccggacgggttccggtacgga
aggatgtcgtgcagcggtgacgggtcagaaaaagacggcgcctcgtcagattgcgacgtt
gctgcggcgacgccgcctgacgctcggcgctccggcccggaggcccgctgccccgggccg
accgacgccgtgaaaagagaaacgtcggcgagccccgagcccccgcgggtcccgacccag
cagggcgcttccaacgagggccgcgcggcgagcccggacgccaagaggacccggacagac
gagcggcgccccccggccggacacgaggccgacactaacccggcggtggacgctccggtg
ttcctgcagaaaaggtcggtgcccctccagttctccttgcaggagctggcggggagggtg
aagcggctgcaggagctgcagagacagcgggccggcgatgacctgcgctatcggcgcttc
agggccaagatcgaccccggagagaaccagagtgcagaggcggagcttagtaaagagatc
agtaaagacatgttcaaagagatggagatcatcggccagttcaacctgggcttcatcatc
gccaaactcaacgccgacatcttcatgatcgaccagcacgccacggatgagaagtacaac
tttgagatgctgcagcagcacacggtgctgcagggacagagactcatccttcctcagaag
ctccaccttcccgccgtcagtgaaaacgtactcctagagaacatggagatcttccaaaaa
aacggctttgaattccttgtggatgaggacgctcaggtgatggagagagttaagctggtg
tctctgcccaccagtaaaaactggacttttggcccggccgacatcgaagagctgatcttc
atgttgagtgacagcccgggggtcatgtgtcgaccgtcccgcgtcaggcagatgtttgcc
tcccgagcttgtcgaaaatcggtgatgattggcactgccctgaatgtagctgagatgaag
aagctcctggtccacatgggggagatcgaccatccgtggaactgtcctcacgggaggccc
accatgagacacctcgccaacctggacatcatctcacaagaataa
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