Pungitius pungitius (ninespine stickleback): 119213368
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Entry
119213368 CDS
T07626
Symbol
trub1
Name
(RefSeq) probable tRNA pseudouridine synthase 1
KO
K03177
tRNA pseudouridine55 synthase [EC:
5.4.99.25
]
Organism
ppug
Pungitius pungitius (ninespine stickleback)
Brite
KEGG Orthology (KO) [BR:
ppug00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
ppug03016
]
119213368 (trub1)
Enzymes [BR:
ppug01000
]
5. Isomerases
5.4 Intramolecular transferases
5.4.99 Transferring other groups
5.4.99.25 tRNA pseudouridine55 synthase
119213368 (trub1)
Transfer RNA biogenesis [BR:
ppug03016
]
Eukaryotic type
tRNA modification factors
Psudouridine synthases
119213368 (trub1)
Prokaryotic type
119213368 (trub1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TruB_N
TruB_C_2
Pus10_C
GAIN_A
Motif
Other DBs
NCBI-GeneID:
119213368
NCBI-ProteinID:
XP_037320506
LinkDB
All DBs
Position
21:9521515..9526182
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AA seq
262 aa
AA seq
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MAGNIHNTTAPISSSLSKLQALNGLFAIYKKQGPTSADVLNTLKEVLLKEAGVKNPNPRK
RKKPSLKMGHGGTLDSTASGVLVVGVGNGTKMLSTMLAGSKKYVAVGELGKATDNLDASG
SVVLEKDFEHITSLDIEEKLKAFTGDIMQVPPLYSALKKDGQRLSVLLMKGHKVEAKPAR
PVTVHNLSLQEFKPPLFTLDIECGGGFYVRSLVDDLGKALSSCAHVKELIRTKQGQFTLE
EHALHEEQWTLEHILRSLQPCS
NT seq
789 nt
NT seq
+upstream
nt +downstream
nt
atggcaggaaatatccacaacaccacggctccgataagtagctctttgtccaaactacag
gcgctaaatggattgtttgcgatatataaaaaacaagggccgacatccgcagacgtgtta
aatacactcaaagaagttttactcaaagaagccggagtgaaaaacccaaacccgcgaaag
aggaagaagccgagcctgaagatggggcacggagggacgctggacagtacggccagcggg
gtgctggttgttggtgttggtaatggcacaaagatgctcagtacaatgttggctggttct
aagaaatacgtggccgtgggtgaactggggaaagcgacagacaacctggatgcctctggc
agtgtggttctggagaaagactttgaacacattaccagcttggacatcgaggagaaactg
aaagctttcacaggagacatcatgcaagttcctccactctactctgcgctgaagaaagac
ggccagcgactctccgtcctgctgatgaaaggtcacaaggttgaggccaaacccgccaga
ccggtgacagtgcacaacctgagcttgcaggagttcaagcctcccctcttcaccctggat
atcgagtgtggcggtggattttacgtcagaagcttggtggatgacctaggaaaagctctg
tcatcgtgcgctcacgtgaaggaactgatccggaccaagcagggtcagttcaccctggag
gagcatgccctgcacgaggagcagtggacgctggaacacatcctgcgctctctgcagccc
tgctcgtaa
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