Pungitius pungitius (ninespine stickleback): 119213397
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Entry
119213397 CDS
T07626
Symbol
rnf40
Name
(RefSeq) E3 ubiquitin-protein ligase BRE1B isoform X1
KO
K10696
E3 ubiquitin-protein ligase BRE1 [EC:
2.3.2.27
]
Organism
ppug
Pungitius pungitius (ninespine stickleback)
Brite
KEGG Orthology (KO) [BR:
ppug00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
ppug04121
]
119213397 (rnf40)
Enzymes [BR:
ppug01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
119213397 (rnf40)
Ubiquitin system [BR:
ppug04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
BRE1 proteins
119213397 (rnf40)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
BRE1B
CC_Bre1
zf-C3HC4
BRE1
zf-C3HC4_3
zf-C3HC4_2
zf-RING_UBOX
ADIP
zf-RING_2
zf-RING_5
SpoIIE
zf-rbx1
Motif
Other DBs
NCBI-GeneID:
119213397
NCBI-ProteinID:
XP_037320555
LinkDB
All DBs
Position
21:complement(1857631..1867427)
Genome browser
AA seq
995 aa
AA seq
DB search
MSGAGGGKRPSGGDSPPGPPEKKSKKEEITTTTLIEPIRIAGVSSTEEMDMKVLQFKNKK
LCERLEQRQTMEDELREKIEKLEKRQATDDTTLLIVNRYWSQLDENVHVLRKRIEPDPPV
TAAPAPPAPPLPESTPMEEDGVSLATPASAVPPPPLPEVHYEGEQAEERQEEKKQPPLPT
GSEELLTPTDSPQDPSADASLPPPPVSDNAKGFLATLEHSSEEELTLHLQDRMQFSKEAI
ACLVCVFDRLHSRIDNMCKQVQAAAYEDDSQSDIINVNHTLLDENTRLRDLATLLQGRHH
KMSMEYNELVDKVTSSETKVSEMETTVEDLQWDIEKLRNREQKLNKHLAEAMEQLKSGYS
SSGSSGGLPGGQITLNIQKFESLNAELEHNQELANSRMAELEKLQVELQEAVRESEKLKM
DLRNIPEDVVKETLEYKCLQSQFSLLYNESLGVKTQLDEARALLLTAKNAHLRQIEHMES
DELSLQKKLRTEVIQLEDTLAQVRKEYEMLRIEFEQNLAANEQAGPINREMRHLISSLQN
HNLQLKGDVQRYKRKLRETQMEINKQLRYQSGEAGVLAIEETTSDSIEVKKEEDEDQEEE
EERRKELERQRARERERESERERERDRERERQQRGDELKRKDSDTLKMLRVELKKAQESQ
KEMKLLLDMYKSAPKEQRDKVQLMAAERKSKAEVDELRMRVRELEERERKESKKLADEDA
LRKIRVAEETIEHLQKKLAATKQEEEALLSEMDVTGQAFEDMQEQNSRLLQQLREKDDAN
FKLMSERIKSNQIYKLLKEEKEELADQVLTFKTQVDAQLLVVQKLEEKEGILQSALAALE
KELALRTQALELNKRKAVEAAQLAEDLKVQLEHTQAKLKEIQVSVAENRTARERESSNLK
RAQEDLSRLRRKLEKQKKVEVYSDADEILQEEINQYKAKLRCPCCNTRDKETVLTKCFHV
FCYECLKMRYDTRQRKCPKCNCAFGANDFHRIYIT
NT seq
2988 nt
NT seq
+upstream
nt +downstream
nt
atgtcaggtgctgggggaggaaaacgtccctcaggtggggacagcccccctggcccacct
gagaagaaaagcaaaaaagaggaaataaccaccacgacgctcattgagccaatacgcata
gctggagtctcctccacggaggaaatggacatgaaggtcctccagttcaagaacaagaag
ttgtgcgagcgcctggagcagaggcagaccatggaggatgagttacgagaaaaaattgag
aagctggagaagagacaagccaccgatgacaccaccctgctgattgtcaaccgctactgg
tcgcagttggacgagaatgttcacgttctgcgcaaacgcatcgagccggatcctcctgtg
acagccgcccctgccccacccgcgccccccctgcccgaatccacaccaatggaggaagat
ggtgtcagtctggctacacctgcttctgctgtgcccccaccccccctgccagaggtccat
tatgaaggagagcaagcagaggagcgtcaggaagagaagaagcagcccccgcttcctact
gggtcggaagagttattgacacccacagactctccacaggacccatcagcagacgcatca
ctacccccccctccagtcagtgacaatgccaaaggcttcctggctacgttagagcacagc
agcgaggaggagctcaccctccacttacaagaccgcatgcagttcagcaaggaagccatt
gcctgcttggtctgtgtctttgaccggctgcacagccgcatcgacaacatgtgcaagcaa
gtccaggctgcagcgtatgaggacgatagtcagtctgacatcatcaacgtgaaccacact
ctgctggacgagaacacgcgactacgcgacctggccactctgctgcagggtcgacaccac
aagatgtccatggagtacaatgagttggtggacaaggtgaccagctccgagaccaaagtg
tccgagatggaaacaaccgtggaggacttgcagtgggacatcgagaagctccgcaatagg
gaacagaagctcaacaaacatctggcggaagccatggagcagctcaagtctggatacagc
agcagcggcagctcaggtggacttcctggaggccagattacactgaacatccagaagttc
gagagtctcaatgcggaactggagcataaccaagagttggctaatagccgcatggcagag
ttggagaagctgcaggtggagctgcaggaggctgtaagagagagtgagaagctcaagatg
gacttgcggaatattccggaagatgttgtgaaggagactctggagtacaaatgtctccag
tcccagttctcgcttttgtacaacgagtccctcggggtgaaaacccagctggacgaggcc
cgggccctcctgctcactgccaagaacgcccacctccgacagatcgagcacatggagagt
gacgagctgtcccttcagaagaagctgcgcacggaggtcatccagctggaggacaccctg
gcgcaggtgcgcaaagagtacgagatgctgcgcatcgagtttgagcagaacctggcagcc
aacgagcaagcaggaccaatcaacagagagatgcgacacttgatcagcagccttcagaac
cacaacctacagttgaaaggcgacgtgcagcgctacaaaaggaagttgcgggaaacacag
atggagatcaacaaacagttgcgctatcaaagcggcgaggcgggcgttctggctatagaa
gagacgacgagcgacagcatcgaagtgaagaaagaggaagacgaggaccaggaggaggag
gaggagaggaggaaagagctggagagacaacgggctcgggagagggagcgagagagcgag
cgggagcgcgagagggaccgcgagagagagcggcagcagcgcggcgacgagctgaagagg
aaggactcggacacgctgaagatgctgcgagtggagctgaagaaagctcaggagtcccag
aaagagatgaagctcttgctagacatgtacaagtcggctccgaaggagcagagggacaaa
gtgcagctcatggctgctgaacgcaaatctaaagccgaggtggacgagctgaggatgcga
gtgcgcgagctggaggagagggagaggaaagaaagcaagaagctggccgatgaagatgcc
ctcaggaagattcgggtggcagaggagaccatcgagcatctgcaaaagaaactcgctgca
accaagcaggaggaggaagccctgctcagcgagatggatgtgacgggccaggccttcgag
gacatgcaggagcagaacagccgcctgctgcagcagctccgggagaaggacgacgccaac
ttcaagctgatgagcgagcggatcaaatccaaccagatctacaagctgctgaaggaggag
aaggaggagctggccgaccaagtgctcacgttcaagacccaggtcgacgcccagctgttg
gtcgtgcagaagctggaggagaaagaggggatcctgcagagcgcgctggctgctctggag
aaggagctggcgctccggacgcaggctctggagctcaacaagaggaaggcggtggaggct
gcccagctggcagaagacctgaaggtgcagctggagcacacacaggccaagcttaaggag
atccaggtgtccgtggctgagaaccgcaccgcccgggagagggagagcagcaacctgaaa
cgagcgcaggaagatctgtcgcggctgaggcggaagctggagaaacaaaagaaggtggag
gtgtactctgacgccgatgagatcctgcaggaggagatcaaccagtacaaggccaagctg
cgctgcccctgctgcaacacgcgagacaaggagacggtcctcaccaagtgcttccacgtg
ttctgctacgaatgcctgaagatgcgctacgacacccggcagaggaagtgccccaagtgc
aactgtgccttcggcgccaacgactttcaccgcatctacatcacctag
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integrated database retrieval system
