Pungitius pungitius (ninespine stickleback): 119213430
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Entry
119213430 CDS
T07626
Symbol
hif1al
Name
(RefSeq) hypoxia inducible factor 1 subunit alpha, like
KO
K08268
hypoxia-inducible factor 1 alpha
Organism
ppug
Pungitius pungitius (ninespine stickleback)
Pathway
ppug04137
Mitophagy - animal
ppug04140
Autophagy - animal
ppug04148
Efferocytosis
Brite
KEGG Orthology (KO) [BR:
ppug00001
]
09140 Cellular Processes
09141 Transport and catabolism
04140 Autophagy - animal
119213430 (hif1al)
04137 Mitophagy - animal
119213430 (hif1al)
04148 Efferocytosis
119213430 (hif1al)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
ppug03000
]
119213430 (hif1al)
Transcription factors [BR:
ppug03000
]
Eukaryotic type
Basic helix-loop-helix (bHLH)
Factors with PAS domain
119213430 (hif1al)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
bHLH_HIF1A
PAS_11
PAS_3
HIF-1
PAS
PAS_4
PAS_9
CENP-B_dimeris
Astro_capsid_p
Motif
Other DBs
NCBI-GeneID:
119213430
NCBI-ProteinID:
XP_037320617
LinkDB
All DBs
Position
3:17129026..17141992
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AA seq
680 aa
AA seq
DB search
MEEKVETVGVKRTSSEQRKLRSRDAARCRRSQETEVFYELSSTLPLPRRVCTHLDKSAIM
RVALSFLRMHHFLLQPGEKQSEESDEKKQEEEEKEEKENEEDEEDPMDSFYPQALAGFIM
VMTEEGDMIYLTENVSTHIGIPQLELLGQSIYDFVHPCDQEELRDLLNPRPGSSKKPLAR
QPSERNFFLRMKSTLTSRGRTVNIKSAAWKVLHCTGHIRQPGGGSAAPPVGGVMTLLCEP
IPHPSSVEFPLDTRTFLTRHSMDLQFTHCEGRVTELVGYKPEDLIGRSAYEYHHALDSDH
VNKSLHTLLSKGQVSTRHYRFLANGGGFVWAETQATVLYSSKTSQPEAVVCLNYILSGVE
QPDLVFSAEQTRCGRPPKSELCTPADAPEDCGTSDIADPESASLAISSQTEDVDLNPGSA
AELVFKLKKESEDVLQLATEVGNPIGPLTGDFVGLSFSSPPSPNSLPDHPQDLCTSQLRQ
LLLPIFSPMTPPSSSSSSPASPLDVESISCEEEVTDTSEVERFFAVWPENGQKKVEPMAM
EVMDLEMLAPYISMDDDFQLTVHSSFPEDLDKPPSSPSESSVVTMAATLSRKRAHDPDEE
MLSQLMIQDKRQKQDPPSIEEELLLNHRLLSCLEETDQSDLYLSPVAEGRSQLLTDRDPI
LGGTQRPVSPALMRDIFPPR
NT seq
2043 nt
NT seq
+upstream
nt +downstream
nt
atggaggagaaagtggagaccgtcggtgtcaaacgcaccagttcggagcagaggaagctg
cgttctcgtgatgcggcccgatgtaggcggagtcaggagacagaggtgttctatgagctg
tccagcactctgccgctcccccgtcgagtctgcacccacctggacaaatccgccatcatg
agggtcgccctcagcttcctgcgaatgcaccacttccttctccaacccggtgagaagcag
agcgaggagtctgacgaaaagaagcaagaggaggaggagaaggaggagaaggagaatgag
gaggatgaagaggatccaatggattccttctatccgcaggcactggccggcttcatcatg
gtgatgaccgaggagggagacatgatctacctgactgaaaacgtcagcactcacatcggc
atcccacagctggagctgctgggtcagagtatctatgactttgtccatccctgcgatcag
gaggagctcagagacttgctaaatccacgtccaggttccagtaagaagccgttggctaga
cagccgagcgagaggaacttcttcctgcggatgaagagcactctgaccagcagggggcgc
accgtcaacattaagtcggctgcctggaaggttctccactgtacgggtcacatccgtcag
ccgggtggaggctcggcggcgcctcctgtgggcggagtgatgactctcctgtgtgagccc
atccctcacccgtccagcgtggagttccccttggacacgcgcaccttcctaacccgccac
agcatggacctgcaattcacacactgcgagggcagggtgacagagttggtgggatacaaa
cctgaagatctgattggccgctcggcctacgagtatcatcacgccctcgactccgatcac
gtcaacaagagtctgcacacactgctgtccaaaggtcaagtgagcaccagacactatcgt
ttcctggctaacggcggcggctttgtgtgggcggagactcaggcgaccgtcctctacagc
agcaagacatcgcagccagaggccgtcgtctgcctcaactatatcctcagtggcgtggag
cagccggacctcgtcttctctgccgaacagactcgttgtggccggccgcctaaatccgag
ctctgcacgccggcggacgcaccggaggattgcgggacttccgacattgctgaccctgag
agtgcgtctctcgccatctccagtcagactgaggacgtagatctgaatcccggcagcgct
gccgagcttgttttcaaactgaagaaggagtcagaggatgttctccagttggctactgag
gtcggaaaccccatcggcccgctgacgggagattttgtggggctgtcgttctccagtccg
cccagtccaaactcactgccggaccaccctcaggacctgtgcacctcacagctgcgacag
ctcctcttgcctatcttcagcccaatgacgccaccttcatcctcgtcatcatcaccggcc
tccccacttgatgttgagtcgatctcctgtgaggaggaggtgacggacacgagcgaggtg
gagaggttctttgctgtttggccagaaaatggtcagaagaaagtggaaccaatggcgatg
gaggtgatggatctggaaatgttggctccttatatctccatggacgacgacttccaactg
accgtccacagcagtttcccggaggacttggacaaacctccgtcatctccgtccgagtcc
tctgttgtgacaatggccgccacattgagcaggaaacgggctcacgacccagatgaggag
atgctgtcccagctgatgattcaggacaagagacagaaacaagacccgccctcaatagaa
gaggaacttcttctcaaccacagacttctgagctgtctggaggaaaccgaccaatcagat
ttgtacctgagccctgttgctgaagggcgaagtcagctgctcacagacagggaccctatt
ttaggaggcacacagagacctgtttctccagctctgatgagggacatattcccacctcgt
tga
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