Pungitius pungitius (ninespine stickleback): 119213913
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Entry
119213913 CDS
T07626
Symbol
tarbp1
Name
(RefSeq) probable methyltransferase TARBP1 isoform X1
KO
K15333
tRNA guanosine-2'-O-methyltransferase [EC:
2.1.1.34
]
Organism
ppug
Pungitius pungitius (ninespine stickleback)
Brite
KEGG Orthology (KO) [BR:
ppug00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
ppug03016
]
119213913 (tarbp1)
03036 Chromosome and associated proteins [BR:
ppug03036
]
119213913 (tarbp1)
Enzymes [BR:
ppug01000
]
2. Transferases
2.1 Transferring one-carbon groups
2.1.1 Methyltransferases
2.1.1.34 tRNA (guanosine18-2'-O)-methyltransferase
119213913 (tarbp1)
Transfer RNA biogenesis [BR:
ppug03016
]
Eukaryotic type
tRNA modification factors
Methyltransferases
119213913 (tarbp1)
Chromosome and associated proteins [BR:
ppug03036
]
Eukaryotic type
Gene silencing
RISC (RNA-induced silencing complex)
119213913 (tarbp1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SpoU_methylase
TARBP1
Motif
Other DBs
NCBI-GeneID:
119213913
NCBI-ProteinID:
XP_037321045
LinkDB
All DBs
Position
13:10523815..10534971
Genome browser
AA seq
1642 aa
AA seq
DB search
MNSVLVNAVLSSSPDFHLLFESLTWPSDSWPGTERVEALTAFMEGLGPILAESDTTRCSA
AKRRSIIAQVDSVVWTRCLPLLSKISAEAGEGTRRRESTAAACRLLGVCVPLCDRAAPGR
VALSVLPSLQQAEAEAEEEEEEEEGVPGPWRLSAEVASEAMAALVPSLAADEQLTLITLS
SALSCIKTLPDAMVSRIIVRLLLTVLDCCGGAILTRVLKLVLEDMCSWHRADRTHVVAER
TLLCLTALSEHLLKPHSLPSSSFFSSSSPRREVDPRLSVQFWRMIQDGLTHRDSVSRKRA
LYLLKMCVALSEEEGLDCPLSPSEEAADDILFKWEPSRSKLLREFWEDYALVMETLEENQ
IHVVRPVLNRIDTLIQTTVNEGQAVGQVFFHPSWLLCVYQRMFHSENKSLMREGVCHLLE
LQVLRQPAFALAFSQFIAGPFMDVLSETSLFHKSVGQSVGDCPELGAKLQVFMITFFTSL
PSAHRGRILLQMIRQLCSKHWCAAPLLFLSQALSKLPPGPLLGVEGLAALREVLCCTVIT
HQVLLRGATQCFLLNSALCLIDVSAVTLDDVFSFLVHFRPDESLSRGTQIWNQLCSWLLD
NEGSFKPRITDGDSTGDAPQKETVRGYVQSEMHSYLRVPASAGHTERVPDSREADKLTRA
MLLCVDMERNQPGDKIGTTLEALLSPLLDTLSRVSTNIYLPLRKSDKSLQLLLRLFQLGG
APSCERVGEERVDDVMVAMERLIYKLADPIHEFILRRLLGEMQEPFDVERAELYLCVLRQ
MVVLYKSTPQHHSKTQQTYFPKLIKCSLKVLQEPNQQIPSVANQVARAVAMASLATVCGL
VEQEVIGMQSETLSALKSLNDYFYTLVSSSCQSLGNLNKRLQKPKIGDDLGDAGVQGGLL
QDWGRVAANFLRDQWICLSFLIKAFGVPESVVISNHWATLKAAVSCGVEALALLPSGLVL
PVLTFMETVLPQLLLHEEALCVEAVTLTWELVQGLSTNALDFWPALKGFVSMAFHRKLLQ
LTDTSAPTLLAALKQIATELMELSQSKSGVLGVLLQHCCQTWLPTDGGSNAAVFSTVFSH
INVLTEACVFGPVFRRDQRLIQDVQTYVERLGEECAANVAVTSDNRDDQLPRTCVLAFLS
RLDSSDLQHERLMEELVMDLLKKDNNISKSKVRYYSNSLQHRVKNRVWQSLLLLLPKLRE
EFVATVLNCVFEAAFCSNHASVKYLIEWMMILILVRYPHHIDSFWACFTRDHDKTKTSIC
TFLSVLVHFNVIIPNLKDKAVHLRKALDIILQWCFNHNFSVRLYALLALKRVWSLAGTQA
EEGADGLRGMSTVIKACLNQAEAMQSTGNANKNWTRIQDHFFFGAFDPISDYSVETIFYT
FPSLSEMTDDEWIPPWKFEKLLCFSESASFPLRNPAPDLSQLQPGDWIQQDKGEQNKEER
WAEVQKKITPWRLGIQEQEPELQLVPQQRAARLGKLHGALLVVASLIDKPTNLGGLCRTC
EIFGASTLVLDSLRHVSDKHFQSLSVSSELWLPLLEVKPMELTDFLQLKKSEGYCIVGVE
QTANSQSLQDYRFPEKTLLLLGNEREGIPANLLQMFDVCVEIPQQGVTRSLNVHVSAALL
IWEYTRQHLTSASAEVDSKPKN
NT seq
4929 nt
NT seq
+upstream
nt +downstream
nt
atgaattccgttttagtcaacgcggtcttgtccagctcccctgacttccaccttttgttc
gagtctctgacctggccgagtgactcgtggccggggaccgagcgagtggaggcgctgaca
gctttcatggaaggactgggaccaattctggcagagtcggacactactcgctgttcagca
gcgaaaaggagatctataattgctcaagtggactcggtggtgtggacccgctgtctacct
cttctctccaagatatcggcggaagccggcgaaggcacgcggcgcagggagagcaccgcc
gccgcctgcagactgctgggtgtctgcgtcccgctgtgtgaccgggcggcgccggggcga
gtagctctctcggtcctgccgtcgctccagcaggcggaggcggaggcggaggaggaggag
gaggaggaggaaggcgtgcccggtccgtggcgactcagtgcggaggtggccagcgaagcc
atggccgccctcgtcccttctctggcggcggacgaacagctgacgctcatcaccttgtcg
tccgccttgtcctgcatcaaaacgctgcccgatgcgatggtgtccaggatcatagtccgg
cttctcttgactgtgctcgactgctgcggcggcgcgatcttaacccgcgtcctcaagctg
gtcctggaggacatgtgcagctggcaccgcgctgaccgcacacacgtggtcgcggagcgg
acactgctctgtttgaccgccctgtcggagcacctgctgaagccccacagcctcccctcc
tcttccttcttctcctcctcctccccccgccgcgaggtcgaccctcgtctgtccgtccag
ttctggaggatgattcaggacggactgacgcacagggacagcgtgtcacgaaagagggcg
ttgtacctgctcaagatgtgcgtggccctgtcagaggaggaggggctggactgccccctc
tctccatcggaggaagcagcagatgacatcttgttcaaatgggaaccgagcaggagtaag
ctgctgagagagttctgggaggactacgcactggtgatggagaccctggaggagaaccag
atccacgtggtccggccagttcttaacagaatagacacgttgatccaaacaacagtaaat
gagggccaagctgtgggtcaagtcttcttccacccatcctggctgctgtgtgtgtaccag
cggatgttccacagcgagaataaatccctgatgagggagggagtgtgtcatctgctcgag
ctgcaggtcctccggcagccagccttcgcgttggccttttctcagttcatcgctggccct
tttatggatgttctgtccgaaacttcgctctttcacaagtcagttgggcagagcgtagga
gattgtcctgagcttggggctaaactgcaggtcttcatgatcacgttcttcaccagttta
ccgtctgcgcatagaggccgaatactgctgcagatgattcggcagctgtgctctaagcac
tggtgtgcggcaccgctgctcttcctctcacaagctctctccaagctgcctccaggtccg
ctgctgggggtcgaggggctcgccgccctcagggaggtgctgtgctgcactgtgatcact
catcaggtcctgctgcgaggggccacccagtgcttcttgctgaacagcgccctctgtctc
atagacgtgagcgcagtgaccctcgacgatgtttttagtttcctggtgcattttcgtcca
gacgagtcactttctagagggacgcagatttggaatcagttgtgttcctggctgttggac
aatgagggcagtttcaagcccaggattacggatggagattccactggtgatgccccgcag
aaagaaaccgtaagaggctacgtccaaagcgagatgcactcttatctccgagtcccggct
agcgcgggtcacaccgagagggtaccggactccagggaggccgataagttgacccgggcc
atgctcctgtgtgtggacatggagcggaatcaacccggagacaagatcggtaccactttg
gaggcactgctgtctccgctgctggacaccttgagcagagtcagcaccaatatctacctg
ccactgcgtaagagcgacaagagcctgcagctcctgctgcgcctgttccagctcggaggc
gcaccaagctgtgagcgtgttggggaggagcgagtggatgatgtgatggttgccatggag
aggctaatctataaacttgccgatccaatccatgagttcattttgaggcggctcctcgga
gagatgcaagagcccttcgatgtggagcgggccgaactgtatctgtgtgtgctgagacag
atggtggtcctgtacaaatccacaccacagcaccacagtaaaacccagcagacctatttc
cctaaactcatcaagtgcagcctcaaggtgctgcaggaaccaaaccagcagatcccctcc
gtggcaaaccaggtggctagggcggttgctatggcgtccctggctaccgtatgtggtctc
gtggagcaagaagtgattggcatgcaatcggagaccctttctgctttgaagtcactgaat
gactacttctacactctggtgtcgtcttcctgccaaagtttggggaacttgaataaacga
ctgcaaaaaccaaaaataggagacgatttgggtgatgcaggagtgcaggggggcctgcta
caggactggggacgcgtagccgccaattttctgcgggaccagtggatttgtctgagcttc
ctgataaaagctttcggggttcctgagtctgtagtgatttccaaccactgggctactctt
aaggccgctgtgagctgcggtgtggaggccttggctctgctgcccagtggcctggtgctg
cccgtgctcacctttatggagacagtgctgccacaattgctgcttcacgaggaggccttg
tgtgtggaggccgtgactctgacctgggagctggtgcaggggctgagcaccaacgccctg
gacttctggccggccctcaaaggcttcgtctccatggccttccaccggaaactgctgcag
ctgacggacacgtccgcgccgacacttctggccgccttgaaacagattgccactgagttg
atggagctgtctcagtcgaagagcggcgtgctcggtgtgctgcttcaacactgctgtcag
acgtggctgcccacggacggcggcagcaacgccgctgtgttttctaccgttttcagccac
atcaacgtactcactgaggcgtgtgttttcggaccagtgttcaggagagatcaacggctt
atccaggatgtccaaacatatgtggagcgacttggtgaagagtgtgctgccaatgttgca
gtgacaagtgataacagggatgaccagttgccccgcacatgtgtgctagctttcctcagc
cgcttggattcctctgatctgcagcatgaaagactgatggaggaactagtgatggatttg
ttaaaaaaggataataacatatcaaagtcaaaagtgcgttactatagcaactccctgcaa
catcgtgtcaaaaacagagtgtggcaatcgctgctgctgctgctgcccaaactccgagag
gagtttgtcgccactgtgctgaactgtgtgtttgaagctgcattctgcagcaaccatgcc
tcagtcaaatacctgattgaatggatgatgattctgatcctcgtccgctatccacatcac
attgacagcttctgggcctgtttcacccgggatcatgacaagaccaagacgagcatctgc
accttcttgtcagtcctggtacatttcaatgtcatcattcctaatctcaaggacaaggct
gtgcatttgcgtaaagcactggacatcatcctgcagtggtgtttcaaccacaacttcagc
gtgcgtctgtatgccttgctggccctgaagagggtctggagcttggctgggacccaggca
gaggaaggagccgacgggttgagaggaatgtccactgtgatcaaggcctgcctgaaccag
gccgaggccatgcagagcaccggaaacgccaacaagaactggacaaggattcaggaccac
ttcttctttggggccttcgatcctatcagtgattacagtgtggagaccatattctatacc
ttccccagtctgtcagagatgactgatgatgagtggattccaccgtggaagtttgagaaa
ctgttgtgtttctctgaaagtgcatcttttcctctgagaaacccggctcctgacctgagc
cagctgcagcctggagactggatccagcaagacaaaggcgagcagaataaggaggaacgc
tgggccgaggtgcagaagaagatcacgccctggaggttagggattcaggagcaggagccc
gaacttcagctggtcccacaacagcgggctgctcgactgggcaaactgcacggcgccctg
ctggtggtagcctcgcttatcgacaagcccactaatctaggaggtctgtgcaggacctgt
gagatcttcggtgccagcactctggttctggacagcctccgccatgtcagtgacaaacac
tttcagtccctgagcgtctcatctgagctgtggcttcctctgttagaggtgaagccaatg
gagctcactgacttcctgcagctaaagaagagtgaaggctactgcattgttggagtggag
cagacggccaacagtcagagcctccaggactaccggttccctgagaagaccctgttgctt
ttgggcaatgaacgtgaaggtattcctgccaatttacttcaaatgtttgacgtgtgtgtg
gagatccctcaacaaggagtcacccgctcactcaacgtgcacgtgagcgctgccctgctg
atttgggaatacacgcggcaacacctcacctccgcctcagctgaagttgactcaaaacct
aaaaactga
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