Pungitius pungitius (ninespine stickleback): 119213979
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Entry
119213979 CDS
T07626
Symbol
msh6
Name
(RefSeq) DNA mismatch repair protein Msh6 isoform X4
KO
K08737
DNA mismatch repair protein MSH6
Organism
ppug
Pungitius pungitius (ninespine stickleback)
Pathway
ppug03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
ppug00001
]
09120 Genetic Information Processing
09124 Replication and repair
03430 Mismatch repair
119213979 (msh6)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ppug03400
]
119213979 (msh6)
DNA repair and recombination proteins [BR:
ppug03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
Mismatch and loop recognition factors
119213979 (msh6)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
MutS_V
MutS_III
MutS_I
PWWP
MutS_IV
MutS_II
MUM1-like_PWWP
Motif
Other DBs
NCBI-GeneID:
119213979
NCBI-ProteinID:
XP_037321202
LinkDB
All DBs
Position
13:complement(11193535..11200068)
Genome browser
AA seq
1388 aa
AA seq
DB search
MAKQSSLFNFFTKSPPPVSKPKPKPKPSPSPTEADLPSSVERSSSSPKEQAKEAPQQAAK
AGRAKPKSSDKSSKGGFNKLFGDKAAAVKQSSSTCPFSAGALVWAKLEGHPWWPCMVVPQ
PLSGQQMRGRGRSQRVHVHFFDEPATRGWVSTKYIREYQGSDSSDAKTGGIFFSGKPTIR
RAMELADGLLFDSPEKRIKIPLCMDPSDDDDDNDDDDEEEEEEMELDASALTDECSDEEE
QTDEKVKSSKLGLRSSRASTETGNKAKRRRIIVASDSDGSDEEFNPRKAASSSEEEEEEE
AAAAPLSSEEESTQESDLESPVKPVKRKRPAEKPAPSKAKTPTIASVAAKRAPAAIGVDT
KSRLSAFSAPDSFEGPSNGATGGATTWDHEKLEWCQDGRRKDARRRRQSDDDYDPTTLHV
PEDFLNRASPGMRRWWQIKSQMFDTVVFYKVGKFYELYHMDAVIGVNELGLTFMKGTWAH
SGFPEIGFGRFSDGLVQKGYKVARVEQTETPEMMEARCKSMAKATKFDRVVRREVCRIIT
RGTQTYSVLDGAPSESQSKFLLSLKEKAEEDGSGCCRSYGVCFVDTSVGCFHVGQFPDDR
HCSRLRTLVAHYAPAEVLFEKGNPSAETRKILKALLSSALQEGLSAGTQFWDAQKTLKRL
SEEDYFREAAGEGRGAGAVFLPALLKSMTSGSDSLCLTPKEGAELALSALGGCMFYLKKC
LVDQELLSLANFEEYVPADVELERAAGPAGFFAKTRQRLVLDGVTLANLEIFQNGTGGTE
GTLLERLDTCSTPFGKRLLKQWLCAPLCNPTSIEDRLQAVEDLMGAAAPASEVSELLKKL
PDLERLLSKIHSIGTPLKGQDHPDGRAVLYEEVTYSKRKIADFLSALEGFKTMQEVVAVL
GPVSSESQSPLLRQVGTLKGEEGGLFPDLSAELRRWETAFDHQKARTTGVITPKAGFDPE
FDQARASIQSCERELQEYLDRQKKRLGCRSMSYWGTGRNRYQMEVPDSGVSVPAEYDVKS
TKKGWKRYVTKETERLFSELQGFEEKRDAALRDCMRRLFYNFDKNYKDWKTAVECMAVID
VLLALSRYSQGGDGPMSRPQVVLPDSGDQVSTFLELVGSRHPCVTKTFFGDDFIPNDVVI
GCPGGGEADAGKERASCVLVTGPNMGGKSTLMRQCGLVVILAQLGCHVPAESLRFTPVER
VFTRLGASDRIMAGESTFFVELSETASILHHATKHSLVLLDELGRGTATYDGTAIASAVV
KELAEKICCRTLFSTHYHSLVEDYANNPAVRLGHMACMVENECEDPSQETITFLYKFIAG
ACPKSYGFNAARLASLPEVVIQSGHRKAREFEKSTTSLRLFKKLCRFAEDASLGGSHFSS
LVEMLNNL
NT seq
4167 nt
NT seq
+upstream
nt +downstream
nt
atggcgaagcaaagctccctgttcaatttcttcaccaagtctccgccgccggtctccaag
ccgaagccgaagccgaagccgagtccctcgccgaccgaagcggacctgccctcctccgta
gagaggtccagctcctctccgaaggagcaggctaaggaggcaccgcaacaagcggccaag
gccggcagagcgaaacccaaaagcagcgacaagtcttccaaagggggatttaacaaactt
tttggcgacaaggccgcggcagttaaacagagcagcagcacatgcccattcagtgctggt
gcccttgtgtgggcaaaactggagggtcacccctggtggccatgcatggtggttccccag
ccgctgagcggacagcagatgaggggccgcggtcggagccagcgcgtacacgtccacttc
ttcgatgaacccgccacaagaggatgggtcagcaccaagtatatcagagagtaccaaggg
tctgacagcagtgatgctaaaacgggagggattttcttcagcggtaaacctacaatccgt
cgtgcgatggagctcgcggatggacttttgtttgacagccccgaaaaaagaataaagatt
cctctctgcatggatccgtctgatgatgacgacgacaacgatgatgatgatgaggaggag
gaggaagaaatggagctcgacgcgtcagcgttgaccgatgagtgcagtgatgaggaagaa
cagacggatgagaaagtgaagtcctccaagctcggcctgcgttcatcccgtgcttcaaca
gaaacaggaaacaaggccaagcgccgccgcataattgtagcttctgacagtgatggatca
gatgaggaattcaacccacgaaaggcagcctccagcagtgaggaggaggaggaagaagaa
gccgcagcagcgccgctgagcagcgaggaagagagcacacaggagtccgacttggaaagc
cccgtcaagcctgtgaagcgcaaacgcccggcagaaaagcccgctccttcaaaagctaag
acgcccacaatcgcgtcggtcgcagcgaagcgggcgccggcggccatcggcgttgacaca
aagtctcgcctctcggccttttctgctcccgacagctttgagggcccgtcgaacggagcc
accggaggcgccacaacttgggaccacgagaagctggagtggtgtcaggacggccgcaga
aaagacgcccggcggcggcgacagtcggatgacgactacgatcccaccaccctccacgtg
ccggaggacttcctgaaccgagccagccccggcatgcggcggtggtggcagatcaagtcc
cagatgttcgacacggtcgttttctacaaggtggggaagttttacgaactctaccacatg
gacgccgtgatcggcgtcaacgagctcggcctgaccttcatgaagggcacctgggcgcac
tcgggcttccccgaaatcggcttcggccgcttctcagacggcctggtgcagaagggctac
aaggtggcccgcgtggagcagacggagaccccggagatgatggaggcccgctgcaagagc
atggccaaggccacaaagtttgaccgcgtggtgaggcgggaggtgtgccgcatcatcacc
cgcggcacccagacttacagcgtgctggatggcgcgccgtccgagagccagagcaagttc
ctgctgagtttgaaggagaaggcggaggaggacggctccggttgctgccgcagctacggc
gtctgcttcgtggacacctccgtgggttgtttccacgtgggccagttcccggacgaccgc
cactgctcgcgcctgcgcaccctggtcgcgcactacgccccggccgaggtgctctttgaa
aagggaaacccctcggcggagacgcgcaaaatcctcaaggccttgctgtcctccgccctg
caggaaggactcagcgcgggcacccagttctgggacgctcagaagactctgaaacgtctt
tcggaggaagattacttcagggaggccgccggcgagggccgcggggcgggggccgtcttt
cttcccgctctcctgaagtcgatgacgtccggcagcgactcgctgtgcctcacgcccaaa
gagggcgccgagctggcgctgtcggcactgggcggctgcatgttctatctgaagaaatgc
ctggtggaccaggagctgctctcgctggccaacttcgaagaatacgtccccgccgacgtg
gagctggagagagctgccggaccggccggcttcttcgccaagacccgccagcggctggtc
ctcgacggagtgaccctggccaacttggaaatcttccagaacggcacggggggaaccgaa
gggacactcctggagcgcctggacacgtgctcgaccccgttcggcaagaggctcctgaag
cagtggctctgcgctcccctgtgcaaccccacctccatcgaggaccgactgcaggcggtg
gaggacctgatgggcgccgcggctccggccagcgaggtctcggagctgctgaagaagctc
ccggacctggagcgtctcctgagcaaaatccacagcatcggcacgccgctgaagggccag
gatcacccggacggccgagcggtgctctacgaggaggtcacctacagcaagcgcaagata
gccgacttcctctcagccctggaaggcttcaagaccatgcaagaggtggtcgccgtcctc
ggcccggtgtcgagcgagtcccaatcgccgttgctccggcaggtgggcacgctgaaagga
gaggagggcggcctcttccccgacctctcggccgaactgcggcgctgggagacggccttc
gaccaccagaaagcccgaaccaccggcgtaatcacccccaaggccggcttcgacccggag
ttcgaccaggcccgggcctccatccagagctgtgagcgagagctgcaggaatacctcgac
cggcagaagaagagactcggctgcaggagcatgtcgtactggggaaccgggcggaaccgc
taccagatggaggtgcctgacagcggcgtcagcgtccccgcggagtacgacgtcaagtcc
acaaagaaaggctggaagcgctacgtgaccaaggagacggagcgcctcttctccgagctg
cagggcttcgaggagaagagagacgccgccctgagggactgcatgaggaggctcttctac
aactttgacaagaactacaaagactggaagaccgctgtggagtgcatggcagtgatcgac
gtgctgctggccctgtcccgctacagtcagggtggagacgggccgatgtccaggccacag
gtggtgctccctgacagcggtgaccaggtgtcgaccttcctcgagctcgtgggatcccgc
cacccctgcgtcaccaagacctttttcggggacgacttcatccccaacgacgtggtcatt
ggctgccccggtggcggtgaagccgatgcggggaaagagcgagcctcctgtgtcctcgtc
acggggccaaacatgggcggcaagtcgactctcatgcgacagtgcggactcgtcgtcatc
ctggctcagctgggttgccacgttcccgccgagagcctgcgcttcacgcccgtcgagcgg
gtcttcactcggctgggagcctccgaccgcatcatggccggagagagtaccttctttgtg
gagctgagtgagacggccagcatcctgcaccacgccaccaagcactcgctcgtgcttctg
gatgagttggggaggggcacggccacgtacgacggcacagccatcgccagtgccgtcgtg
aaggagctcgccgagaagatctgctgtcgcaccctcttctcgacacactaccactcgctg
gtggaggactacgccaacaaccccgccgtgcgcctcggccacatggcgtgcatggtggag
aacgaatgtgaggacccgagtcaggagaccatcacgttcctctacaagttcattgctggc
gcctgtcccaagagttacgggttcaacgccgctcgactcgccagcctgccagaggttgtc
atccaatcgggacacaggaaggccagggagtttgagaagagcaccaccagcctccgactt
tttaagaagctgtgccggtttgctgaagacgcctcgctgggaggaagccacttctcttca
ctggttgagatgctcaacaacttgtag
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