Pungitius pungitius (ninespine stickleback): 119213989
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Entry
119213989 CDS
T07626
Symbol
zswim8
Name
(RefSeq) zinc finger SWIM domain-containing protein 8 isoform X2
KO
K25207
zinc finger SWIM domain-containing protein 8
Organism
ppug
Pungitius pungitius (ninespine stickleback)
Brite
KEGG Orthology (KO) [BR:
ppug00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
ppug04121
]
119213989 (zswim8)
Ubiquitin system [BR:
ppug04121
]
Ubiquitin ligases (E3)
Multi subunit type E3
Cul2 complex
Target recognizing subunit
119213989 (zswim8)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ZSWIM4-8_C
SWIM
Ribosomal_L24e
Motif
Other DBs
NCBI-GeneID:
119213989
NCBI-ProteinID:
XP_037321226
LinkDB
All DBs
Position
13:17915661..17936109
Genome browser
AA seq
1947 aa
AA seq
DB search
MELMFAEWEDGERFSFEDSDRFEEDSLCSFISEAESLCQNWRGWRKQSAGPNSPTVKIKD
GQVIPLVELSAKQVAFHIPFEVVEKVYPPVPEQLQLRIAYWSFPENEEDIRLYSCLANGS
PDEFQRGEQLYRIRAVKDPLQIGFHLSATVVTSQSGQSKGAYNVAVMFDRCRITSCSCTC
GAGAKWCAHVVALCLFRIHNASAVCLRAPVSESLSRLQRDQLQKFAQYLISELPQQILPT
AQRLLDELLSSQSTAINTVCGAPDPTAGPSASDQSTWYLDESTLSDNIKKTLHKFCGPSP
VVFSDVNSMYLSSTEPPAAAEWACLLRPLRGREPEGIWNLLSIVREMFKRRDSNAAPLLE
ILTEQCLTYEQIISWWYSVRTSASHSSASGHTGRSNGQSEVAAHACASMCDEMVVLWRLA
VLDPTMSPCRRLELAGQLKQWHLKVIEIVKRGQHRKSLDKLFQGFKPAVESCYFNWEVAY
PLEGITYCSADRKSATFCWSRAVQHQRGVKAAAGLGGEPPEPGGGGRADGGVGGDYKGRG
HSSQQEVAVRPKETLLTKRKGLSVSGGGGMLVRLGGGVSLALEEGGGKCVYKGPGSSAGG
KLKLTQGGGKGASVGGAGGSGGLGGGKHAGTKRRTSSEDSSLEPDLAELSLDDGCSLALG
AEASNTFEFLPPPPEMLPSPSPLLRDSRKYNSNSSGGGKLFEAKRVGHASAAIPSAEPAP
PHTVLVVTDTPSTGEKDVELVTTPVNSEDVDSAGSNQPSAPTPTARSATTPPSAKLPRAR
REAAPAGAPAGAGAAAARGPANQGAEAGGGDAVGEDDYQAYYLSAASEEGADRQLADNHQ
EEEPDIFAGMKPLEQEGRMEVLFACAEALYAHGYSNEACRLAVELARDLLANPPDLKVEQ
PQTKGKKSKVSTSRQTQVATNTLSKAAFLLTVLSERLELHNLAFSTGMFSLELQRPPAST
KALEVKLAYQESEVVSLLKKIPLGLVEMSAIRERGEQLRDGNFCDYRPVLPLMLASFIFD
VLCTPVVSPTGSRPPSRNRNNEMPGDEELGFEAAVAALGMKTTVSEAEHPLLCEGTRRVK
GDLALALMITYKDDQSKLKKILDKLLDRESQTHKPQTLSSFYSSKPAAGSQRSPSKHAAS
HSSASGGVSKHAPPSSSAATASSSTSSSAVAAVSEESANQAHVNTVQNNSTAGENAAERA
SDGPPPSSEQQSEAAPFKLEATVPSRLALGARCGYNQRCWGSPVRQKKKHTGMASIDSSA
PETTSDSSPTLSRRPLRGGWAATSWGRGQDSDSISSSSSDSLGSSSSSGSRRAGGGARAK
STDTSRYKGRRPECHAPHVPNQPSEAAAHFYFELAKTVLIKAGGNSSTSIFTQPSASGGH
QGPHRNLHLCAFEIGLYALGLHNFVSPNWLSRTYSSHVSWITGQAMEIGSAALNILVECW
DGHLTPPEVASLADRASRARDPNMVRAAAELALSCLPHAHALNPNEIQRALVQCKEQDNM
MLEKACMAVEEAAKGGGVYPEVLFEVAHQWYWLYEQSVGGGSGQQRETSGRCGANGGSGR
RPLETSCVVLDAGGNIESAGVATVTASVTTAAVVPVISVGSTIYQSHAMPGQAIAHAHSQ
GLHPYTTIQAHLPTVCTPQYLGHPLQHIPRPAVFPVAGAAYPQGMHPAFIGAQYPFSVAT
GPQPPMAATAVTFPGVPVPSMTQIAVHPYHPETGLPLGTTVAVGSVHTGPTIQAIQGTAL
TSLSSQPASLVSTPFPIEDEQHSQPISQQGLHYLHSAYRVGMLALEMLGRRAHNDHPNNF
SRSPPYTEDVKWLLGLAARLGVNYVYQFCVGAAKGVLSPFVLQEIIMEALQRLNPAHIHA
HLRTPAFHQLVQRCQQAYMQYIHHRLIHLTPADYDDFVNIIRSARGAFCLTPVGMMQFND
VLQNLKRGKQTKELWQRISLEMATFSP
NT seq
5844 nt
NT seq
+upstream
nt +downstream
nt
atggaactgatgttcgccgagtgggaggatggagagaggttctcctttgaagactcggac
cggttcgaggaagactctctgtgctccttcatctcagaggccgagagcctctgccagaac
tggaggggctggaggaagcagtctgctggacccaactcccctactgtcaagattaaagac
gggcaggtgattcctctggtggagttgtcagcgaagcaggtagcgttccacatcccgttt
gaggtggtggagaaagtctacccccccgtcccagaacagctgcagctccgaatcgcctac
tggagcttccccgagaatgaggaggacatcaggttatattcctgcctggctaatgggagt
ccggatgaattccaacgtggagagcagctctacaggatccgggctgtcaaagaccctctg
cagatcggtttccatctcagtgccacagtggtgaccagtcagtccggccagtccaagggg
gcttacaatgtggcggtcatgttcgatcgctgccgcatcacctcctgcagctgcacctgt
ggcgccggggccaaatggtgcgcccacgtggtggctctctgcctcttcaggatccacaac
gcatcagcagtgtgtctgagggctccggtctctgagtctttgtccaggctccagagagac
cagctccagaagttcgcccagtacctcatcagtgagctgcctcagcagatcctccccacg
gctcagcggctgctggatgagctgctgtcctctcagtccaccgccatcaacactgtgtgt
ggggctccagacccaacagcaggcccttcagcatctgaccagagcacttggtatttggat
gagtcgaccctcagcgacaacattaaaaagactctgcacaagttctgtgggccctcacct
gtcgtcttcagtgacgtgaactccatgtacctgtcttcgacggagcctccagctgccgcc
gagtgggcgtgtctgctgcggcctctgaggggccgggagccagagggcatttggaacctt
ctgtccatcgtcagggagatgttcaagagacgagacagcaacgccgccccgctgcttgag
attctcactgagcagtgtctcacctatgaacagatcattagctggtggtacagcgttcgg
acctcggcgtctcacagcagcgccagcggccacaccggacgcagcaacggccagtcggag
gtggcggctcacgcgtgtgccagcatgtgcgatgagatggtggtgctgtggaggctggcg
gtgctcgaccccaccatgagcccctgcaggcgcctggagctagcaggccagctgaagcag
tggcatctgaaagttatagagatagtgaagcgggggcaacatcgcaagtccctggacaaa
ctgttccagggcttcaagcccgctgtggagtcatgctatttcaactgggaggtggcctac
ccgctggagggcatcacctactgcagtgctgataggaagagcgccaccttctgctggtcc
agagcagtgcagcaccagagaggagtcaaagctgctgcagggttgggtggagagcctcca
gaaccggggggaggggggagagctgacggcggagttgggggagattataaaggaaggggt
cactcatcccagcaggaggtggcagtgcgtcccaaggagaccctactgaccaagaggaaa
ggcctgtcagtgagcggagggggagggatgctggtccgtctgggagggggggtctctctg
gctctggaggaaggaggagggaagtgcgtgtacaaagggcctggctcgtccgctggaggg
aagctgaaactgacacagggaggcgggaagggggcctccgtcggaggtgcagggggaagt
ggagggctgggaggggggaagcatgctggcaccaagcgcagaaccagcagtgaagacagc
tccctggagccggacctggccgagctcagcctggacgacggttgcagtctggctctcggc
gctgaggccagcaacacttttgagtttctccccccaccaccagagatgctgccctccccg
agcccgctgctcagagactcacgcaagtataacagcaacagcagtggggggggcaaactg
tttgaggccaagcgcgtcggccacgcctcggctgccatcccttccgcggagcccgctccg
cctcacacggtgctggtggttacagacacgcccagcactggggagaaggacgtcgagctg
gtgacgacacctgtcaacagcgaagatgtagactctgctggcagcaaccagccatccgcc
ccaacccccacggcgagatccgccaccaccccaccgtctgccaagctgccacgggcccgc
cgggaggcagcacctgctggagcgccggcaggggccggagcggccgctgcacgagggccg
gccaatcagggagcggaggcgggaggaggagacgcagtgggggaggacgactatcaagca
tactacctgagtgccgcctcggaggagggagcagacagacagctggctgacaaccaccag
gaggaggagccagacatcttcgcagggatgaaaccattggagcaggagggacgcatggag
gtgctgtttgcgtgtgccgaggccctctatgcccatggttacagtaatgaggcgtgccgg
ctggccgtggagctggccagagacctgttggccaatcctccagacctcaaggtggagcag
ccacagaccaagggtaagaagagcaaggtatccaccagccgtcagacgcaggtagccacc
aacacgctgtccaaggctgccttcctcctcactgttctcagtgagcgcctggagctccac
aacctggccttcagcaccggcatgttctccctggagctccagagacccccggcatccacc
aaagctctggaggtgaagctggcctaccaggagtccgaggtggtgtctctgctgaagaag
attcctctgggcctggtggagatgtcggccatcagagagcgaggcgagcagctcagagat
ggaaacttctgtgactacagacctgtgctgcctctcatgttggccagcttcatctttgat
gtactctgcaccccagtagtgtccccaacgggttcccgtccaccgagccgcaaccgtaac
aacgagatgcccggcgatgaggagctgggcttcgaggccgccgtcgctgctctcggtatg
aagaccacagtaagtgaggcggagcatcctctgctgtgtgaaggaactagacgggtgaaa
ggggacctggctctggctcttatgatcacctataaggacgaccagagcaagctgaagaag
atactcgataagttgttggacagagagagtcagacccacaagccccagactctaagctcc
ttctactccagcaagccggcagctggcagccagcgcagcccgtccaaacacgctgccagt
cacagcagtgcgagcgggggcgtctccaaacacgctccaccatcttcatccgcggcgaca
gcctcttcttccacctcttcctccgccgtggcggcggtcagtgaagagtcggccaaccag
gcccatgtcaacacagtgcagaacaatagcacagcaggagagaacgcagctgagcgagca
tcagatgggcctcctccatccagtgagcagcagagcgaagcggctccctttaagctggag
gccactgtgcccagtcggctggcactgggggctcgctgcggctacaaccagcgctgctgg
ggctctcctgtccgccagaagaagaaacacaccggcatggcgagcatcgacagcagcgct
ccggagaccacctcggacagctcgccgactctcagccgccggccgctccgggggggctgg
gcggccacatcgtgggggcggggccaggacagtgacagcatcagcagctcctcgtccgat
tcgcttggctcctcgtcctccagcggctcacgccgggcagggggcggggccagagccaaa
agcaccgacaccagcaggtacaaagggcggcgtccagagtgccatgccccccacgtgccc
aaccagccatccgaggcagcagcccatttttactttgagctggccaagacggtgctcatc
aaagccgggggaaactcctccacgtccattttcactcagccctcggccagcgggggccac
cagggaccccacagaaacctgcacttgtgtgcctttgagattggcctgtacgcccttggc
ctccacaactttgtctcgcccaactggctgtccaggacctactcctcccatgtgtcctgg
atcactggccaggcaatggagatcggcagcgctgccctcaacattttggtggagtgttgg
gacggtcacctcacccctccagaggtagcgtccctcgctgaccgagcatcgcgggccagg
gaccccaacatggttcgggcggcagcggagttggccctgagctgcctgcctcacgctcac
gccctaaaccccaacgaaatccagagagccctggtgcagtgcaaagagcaggacaacatg
atgctggagaaggcctgcatggcagtagaggaagcagccaagggtggaggtgtgtacccc
gaggttctgttcgaggtggctcaccagtggtactggctgtacgagcagtcagtgggcggg
ggctcgggccagcagcgcgagacctccgggcgctgcggagccaacggcggctcggggagg
aggcccctggagaccagctgcgttgtcctcgacgccggcggcaacattgagtcggcgggg
gtggcgacggtcacggcctcggtcaccacggcggccgtcgtgcccgtcatctcggtgggc
tccaccatctatcagtcccacgccatgccgggccaggccatagcccatgcccacagccag
ggcctccacccctacaccaccattcaggcccatctccccaccgtgtgcaccccccagtac
ctgggacaccctctgcaacatattccccgacccgccgtcttccctgtggctggcgctgcg
tacccacagggaatgcaccccgccttcatcggggcacagtacccgttctcggtggccact
gggccgcagcctccaatggcggccacggctgtgaccttccccggtgtccccgtaccgtcc
atgactcagattgccgtccacccgtaccaccctgagacgggcctgcccctgggcaccacc
gtagcagtaggcagcgtccacacaggccccaccatccaggccatccaggggacggccctg
acctccctctcctcccagcccgcctcattggtcagtactcctttcccaatagaggacgag
cagcacagccagccaatcagccaacagggcctgcactacctgcattctgcctacagagtt
ggcatgctggcgttggagatgctcggcaggagggcccacaacgaccacccgaacaacttc
tccaggagcccgccttacaccgaggacgtcaaatggctgctgggactggctgcgaggcta
ggggtcaactacgtgtaccagttctgtgttggagcagcaaaaggtgtcctcagtccgttc
gtcctacaggagatcatcatggaagctcttcagaggctcaaccccgcccacatccacgcc
cacctccgaacacctgctttccaccagctcgtccagcgctgccaacaggcctacatgcag
tacatccaccaccggctcatccacctgacgccggctgactacgacgactttgtgaacatc
atccgcagcgcccgcggcgctttctgcctgacgcctgtgggtatgatgcagtttaacgac
gtgctgcagaacctgaagagaggcaagcagaccaaggagctgtggcagcgcatctccctg
gagatggcgaccttctccccctga
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