Pungitius pungitius (ninespine stickleback): 119214097
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Entry
119214097 CDS
T07626
Symbol
col13a1
Name
(RefSeq) collagen alpha-1(XIII) chain isoform X3
KO
K16617
collagen type XIII alpha
Organism
ppug
Pungitius pungitius (ninespine stickleback)
Brite
KEGG Orthology (KO) [BR:
ppug00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
ppug00536
]
119214097 (col13a1)
Glycosaminoglycan binding proteins [BR:
ppug00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
119214097 (col13a1)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
Motif
Other DBs
NCBI-GeneID:
119214097
NCBI-ProteinID:
XP_037321449
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Position
13:complement(18673983..18821547)
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AA seq
619 aa
AA seq
DB search
MRSLQREYQRQGSQGKLPTAACVLQGATGEPGLSIIGPRGPPGQPGTRGFPGFPGPIGLD
GKSGQKGQRGDMGDPGPKGEKGVCGDYTHRGPFVQNLPLKSLAALRSSQAVMLKMLPITV
RNMPSISPLILKRLKQGEPGAQGLPGPPGPPGLPGTPGINGASGPMGKPGEPGKPGKDPR
LLPGLKGEQGVPGQKGDQGDVGPLGPEGVKGVKGDQGIKGHEGKRGVLGERGEKGQVGLP
GTPGIPGKRGYRGDKGQPSFAGQGIKGEPGSPGRPGLIGIKGDTGDKGEKGDAGLEGPVG
PRGPLGPAGEPGKTDIENNDNDIRNIPLMGPPGLPGPSGAPGLPGTKGEVGLPGPPGLDG
EKGPRGKSGEPGPAGPAGPEGPRGVDGVIGFSGPKGDKGDMGSSGSPGLDGPTGEKGATG
APGLNGLPGSMGQKGQPGEGGRSEMIYGPPGPPGSPGPVGPAGEPGLGMRGEKGASGQKG
DKGDRGHLGLPGAHGLDGRPGRVGLIGPSGLSGPAGPKGERGETGNAGLSGPIGPQGIPG
LVGPQGLKGNRGERGKKGNRGAKGDKGDQGAPGLDAPCPLGFRGFKGEKGEPGLPGLDGL
DAPCPVGDDGLPVPGCWNK
NT seq
1860 nt
NT seq
+upstream
nt +downstream
nt
atgagaagcttgcagcgagaataccaaagacaagggagtcaagggaagctccccacagct
gcctgtgtcctccagggcgcaacaggcgagccaggactgtccatcattggtccaagagga
cctccggggcaacctgggacaagaggattcccaggctttccaggtccaattgggttggat
ggcaagtctggacagaaaggacagaggggagacatgggggatcctggacccaaaggggag
aagggcgtatgtggagactacacacaccggggtccctttgtgcagaatctccctctgaaa
tccctggctgccttgcgctccagtcaggctgtgatgttgaagatgttgcccatcaccgta
cgcaacatgccctcaataagccctctaatcctaaaacgcctcaagcagggtgagcctgga
gcgcaaggactcccgggacctccaggaccgcctggactcccagggaccccaggcattaat
ggagctagtggcccaatgggtaagcctggtgaaccaggcaaacccggaaaagacccacgg
cttctaccgggacttaagggggagcaaggtgtgccaggacaaaagggggatcaaggtgat
gttggcccactaggtcctgaaggcgtgaagggagttaagggggaccaaggaattaaggga
catgaaggaaaaaggggtgtcctaggagagaggggagagaagggccaggttggtctccca
ggtacccctggcatcccaggcaagagaggctacaggggtgacaagggacaaccaagcttt
gcaggccagggaattaaaggagaaccaggctcaccaggacggccaggcctaattggaatc
aagggtgacactggagataaaggagagaagggggatgccggccttgaaggcccagtggga
ccaagaggtcctctaggcccagctggtgagccaggaaagactgacatcgaaaacaatgac
aatgatattcgcaacatacccctgatgggcccccctggattacctggaccttcaggggcc
cctgggctccctggtaccaagggtgaagttggtctaccaggtcctccgggactggacgga
gagaaggggccaagggggaagtctggagagcccggtcctgcaggcccagctggtcccgaa
ggtcctaggggcgtggatggtgttataggcttctctgggccaaaaggagacaagggagac
atgggttcatctggatcacctggtttagatggccctacaggtgaaaagggggctacaggg
gcccctggccttaatggattacctggctcaatgggtcaaaaaggtcaacctggcgaagga
ggaaggtcagaaatgatctatggacctccagggcctccaggaagtccaggaccagttggc
ccagcaggagaaccaggattaggcatgagaggagaaaagggagcgtctggtcagaagggc
gacaagggcgacagaggccatcttggacttcctggggctcatgggttagacggcagaccg
ggtcgagtgggtctaataggaccatcaggtctatcagggccagcaggaccaaagggggag
agaggtgaaactggaaatgctggattgtcaggaccaattgggcctcaaggcatccccggt
ttagttggaccacaaggactcaaagggaaccggggagagaggggcaagaaaggcaacagg
ggggccaaaggggataagggagaccaaggagcacctggattagatgccccctgtccgttg
ggtttccgaggctttaaaggggagaaaggtgaaccgggcttgccaggcctggatgggctg
gatgccccttgtcctgtgggagatgatggcttacctgtaccaggatgttggaacaaataa
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