Pungitius pungitius (ninespine stickleback): 119214264
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Entry
119214264 CDS
T07626
Symbol
sorcs3b
Name
(RefSeq) VPS10 domain-containing receptor SorCS3 isoform X1
KO
K27083
VPS10 domain-containing receptor SorCS3
Organism
ppug
Pungitius pungitius (ninespine stickleback)
Brite
KEGG Orthology (KO) [BR:
ppug00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
ppug04131
]
119214264 (sorcs3b)
Membrane trafficking [BR:
ppug04131
]
Endocytosis
Others
Others
119214264 (sorcs3b)
Endosome - Lysosome transport
119214264 (sorcs3b)
Endosome - Golgi transport
119214264 (sorcs3b)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sortilin-Vps10
Sortilin_C
PKD
PKD_4
BNR_6
GBP_PSP
Motif
Other DBs
NCBI-GeneID:
119214264
NCBI-ProteinID:
XP_037321827
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All DBs
Position
13:complement(6548610..6618524)
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AA seq
1242 aa
AA seq
DB search
MGLRSFARFSLLAFALLDSLRPKFVAQAEVSSPRSNRLDVTALEELTARKSTEVEAEDSA
KVFIASASDAVVALKPNTRKKVESETLRGLGNDARIGNKTAPNCHNRRKIPGEKVNNISE
DNQGGPATNVMLENTFSDTKKRAKRNVRTTFTDNVDRSSRGEAGSKGRFVETVQGVSNSR
PEYRRTGEETRGSNPRQSEPHLDTSTFALSGDSAHNQAMVHWSGHNSSVILILTKLYDFN
LGAVTESSLWRSSDYGSTYSKLNDKVGSRTVLSYLYVCPTNKQKIMMLSDPEVESAVLIS
SDEGASFEKHPINFNILSLLFHPAQENWILAYSHDSKLYSSMDFGKKWQLIHDNVMPGRF
YWAVMGLDRESDVVHIETRTAKGRAQYVKCRAQRCTEGNRLYLFPGHVDTNSLVVQDEYV
FTQVTKSGRASYFVSYMRESFKRMKLPKYCLPKDMHIISTDEKQVFAAVQEWNQNNTYSL
YISDSPGVYFTLSLENLRTSRGPGGNLLVDFYKVEGINGMYLANKLLDSHVKTFITYDKG
QTWAMLPAPATDVAGNNLHCILPFCSLHLHLEMSENPYTSGPITSKKSVPGIIVATGNTG
TELSSTNLGMFITSDAGNSWRQIFDEEHNVWFLDNGGALLAVLHAATPIRHLWISLDEGK
KWDRHSFSLAPLYVDGVLMEPESDNHIITFFGHFSHRSEWQLIKIDYKGLFNRRCMDGDY
QKWHLHNKGELCVMGEKQIFMKRRPGNRCMLAQDYSRIYSSDPCLCTAYDFECDYGWERQ
ADGKCSPAFWFNPNGATKSCSTSQSFLNSTGYRKVLSNNCKEGGRNVYSPRRQACRPRPP
RGLRLSTSQAELSATVGSNVTFMVYLDEGDSLRTSIQLDFGDGIKITYSNLSRTDDGINH
IYRTTGIYRVTASAENNQGSDSSTLFLHITSPVERVYLSTPMVAVRGKEVNLTAVVWPSH
IRTLTFFWWFENSSEPIITLEGSISFTFQREGINKVTVQVASGSTIMQDSKVITVKEFFR
SLLLSFSLALDEHNPDIPEWREDVGRVVRTALSQVSGVPEEQLLVSLYPGLPSTAELFIL
PDEHTSREHKSGSEEALETISNIFVTALNQGLIQFELKADINIIVYMTQQTLAPLVDSNS
IHSGSATLMLLTAVFVGLAAFFIYKFKRKMPWIHVQAEDRHGKEPEVISTVGQNDNMSKV
KLSEFPSPKELMEKELEARSRGGIGRNMERIVTREFPNCTNV
NT seq
3729 nt
NT seq
+upstream
nt +downstream
nt
atgggactgaggtcatttgcgaggttttccctcctggctttcgcgttgctcgactccctt
cgccccaagtttgtggctcaagcggaagtgagttctccgagatcaaatcgcctggatgtg
actgcgctggaggaacttacagcccgaaaatcgacggaggttgaagccgaagatagcgca
aaagttttcatcgcttctgcatcggacgcagtcgttgctttgaaaccgaacactcgcaag
aaagtagagagcgaaacactgagaggacttggaaacgatgcgcggatcggcaacaaaacg
gcaccaaactgtcacaatcgccgcaaaattccaggtgaaaaggttaataacatatccgag
gacaaccaagggggacccgcaacgaatgtaatgttagaaaatacattttctgacacaaaa
aagcgggcaaagaggaacgtgcgtacaacatttacagacaacgtggataggagttcccgg
ggagaagctgggtcgaaagggcgctttgtggagacggtccaaggtgtctccaactccaga
cccgagtaccgacgcacaggagaggaaaccagagggtctaacccgaggcaaagtgaaccg
cacctggacacctctactttcgctctatcgggagactctgcgcacaaccaggcgatggtg
cactggtccggacacaacagcagcgtgatcctgatcttgactaagctgtatgatttcaac
ctgggcgccgttactgagagctcactctggagatcctctgattatggaagcacctactcc
aaactcaacgacaaagtcggctcaaggacggttttgagctacctgtacgtctgcccaacc
aacaaacagaagataatgatgctcagcgacccagaggtagagagcgctgttctcatcagt
tcggatgaaggagcaagctttgagaagcatcccattaacttcaatatcctcagcctgctt
ttccatcctgcacaggagaactggatactggcttacagtcatgacagcaagctgtacagt
tcaatggactttgggaagaagtggcagctcattcatgacaacgtgatgccaggccgattc
tactgggcggtaatggggctggacagagaatccgatgtggtccacatcgagacgcgcacc
gcgaaaggccgtgcccagtacgtgaagtgccgagcccaacggtgcacagaaggcaacagg
ctgtacctcttccctgggcacgtagacaccaactcgctggtggtgcaggatgaatacgtt
ttcacacaggtaaccaagtcaggaagagccagctacttcgtctcctacatgagagaatcc
ttcaagcggatgaaattacctaaatattgtctaccaaaggacatgcacatcatcagcacg
gatgagaagcaggtgtttgctgcggtgcaggagtggaatcagaataacacgtacagcctg
tatatctcagactcccccggggtttacttcaccctttcattagagaacctgagaaccagc
agaggacccggcggaaacctactggttgacttttacaaggttgaagggataaatggcatg
tatctcgccaacaaactgctggacagtcatgtcaagacttttatcacatacgacaaggga
caaacatgggccatgttgccagctcctgccaccgatgtggctggaaataacctccactgc
attctgccattttgttcgctgcatcttcatctggagatgtcggagaatccctacacgtct
ggacccatcaccagcaaaaagtctgtgccaggcatcatcgtggctacagggaataccggg
acagagctgtcctccactaaccttgggatgtttatcacatctgatgcaggaaatagctgg
agacagatttttgatgaagagcacaacgtctggtttcttgacaacggaggggctttgctg
gccgtcttacatgcggcgacgcctatccggcacttatggatcagtctagacgaaggaaaa
aagtgggaccgtcacagtttctccttggcccctctgtatgtggacggagttttaatggag
ccggaatctgacaatcacattatcacgttttttggacacttcagtcatcggtccgagtgg
cagctgatcaagatcgactacaaagggctctttaacaggagatgcatggatggagactat
caaaaatggcacctccacaacaagggagagctgtgtgtaatgggagagaagcagatattt
atgaagcgcaggccgggcaaccgatgcatgctggcccaggactactcgaggatctattcc
tcagacccgtgcctctgcacggcctacgactttgaatgtgattatgggtgggaacgtcag
gcggatggaaagtgctccccggctttttggtttaatccaaatggtgcgactaaaagctgc
agcaccagccaaagcttcctcaacagcacagggtatcgtaaggttctgtccaataactgc
aaggagggagggaggaatgtttactcccccaggaggcaggcgtgtcgtcccaggcccccg
cgaggcctgcggctctcaacgagtcaagcagagctcagcgccaccgttggaagcaacgtc
actttcatggtctacctcgatgaaggagactctttgaggaccagcatccagctggacttc
ggggacggtattaagatcacatactctaacctgagcaggacagatgatggcatcaaccac
atctacagaacaactgggatttacagagtgacagcttctgccgaaaacaaccaggggtct
gacagcagcacgctgtttttacacattaccagtccagtggaacgtgtttatctctcgact
cctatggtagccgtcagggggaaggaggtcaatctgactgcggtggtttggccgagtcac
atcagaactttgaccttcttctggtggtttgagaacagctccgagcccatcataaccttg
gagggaagcatctcattcacatttcagagagaaggaataaacaaggtcacggtccaggtt
gcttctgggagcaccataatgcaggattcaaaagttataactgttaaagaattcttcagg
tcgctgctgctgtcattctcgctcgctcttgacgagcacaatcctgacattccggagtgg
agggaggacgttggccgcgtggtgcggacagctctgtcacaggtgtctggggtccctgaa
gagcagcttctggtgtctttgtatcccggacttccatccacagcggagctctttatccta
cctgatgagcacacgtcaagagagcacaagagtgggagtgaggaggccctcgagacgata
tccaatattttcgtgactgccctgaaccaaggcctgatccagtttgagctgaaagcagat
attaacattattgtgtacatgactcagcaaactttggcacctctggtggattcaaactcc
atccacagcgggtcggccacgctgatgctgctcactgcggtctttgttggtttggcagca
ttcttcatctacaaattcaaaaggaaaatgccctggatccacgttcaagctgaggacagg
cacgggaaggaaccggaggtgatcagtacagtcggccagaatgacaacatgtcaaaggtc
aagctcagtgagtttccttctccgaaggaactcatggaaaaggagctggaggccaggagc
agaggtggaattggaagaaatatggagagaattgttacacgggaatttccaaactgtact
aacgtctaa
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