Pungitius pungitius (ninespine stickleback): 119214342
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Entry
119214342 CDS
T07626
Name
(RefSeq) collagen alpha-1(XVII) chain-like isoform X1
KO
K07603
collagen type XVII alpha
Organism
ppug
Pungitius pungitius (ninespine stickleback)
Pathway
ppug04382
Cornified envelope formation
Brite
KEGG Orthology (KO) [BR:
ppug00001
]
09150 Organismal Systems
09158 Development and regeneration
04382 Cornified envelope formation
119214342
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Gene cluster
GFIT
Motif
Pfam:
Collagen
Motif
Other DBs
NCBI-GeneID:
119214342
NCBI-ProteinID:
XP_037321956
LinkDB
All DBs
Position
13:complement(6708976..6729642)
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AA seq
1835 aa
AA seq
DB search
MDELTRQMDFSGGLSEEKVVRETVTSTSRLTSLPPKGTSGSNHRNMSSGAGGLGLEKNVL
TQNSSGTYFTSSAVGVNTTSYGSSSGVYLGGDSSGGDGGGIFIDGEGFGSAGGGGGGGGG
GGGGGGGGGSYLVSSVSKVRSSSSGGARQAQTDGSSGGLSPVSRERKNVSVRSGGYEGSS
SGNSSPEFTRKDYGIYCSSGTRGRSESRESAIRARLQSASPSASRWTELDDVKKLLKGRS
CSVSPTRSSTASITLPVPKKASVETKTISVACQSGSPTSFGSGVRSTGFQTIDTSGFYDT
GLTSEKFDSGVKSGHYDATLKSGQYDTGVKSGHYGVSLKSGQYDTGVKSGQFDTSLKSGQ
YDTTVRSAQYDTGVRSAQYDTGVRSALYDTSVRSAQYDTGVRSAQFDTGVRSVQYDTSVR
SGQYDTGVRSRQYDTLDATLPTFSWSTTTLPSASTTVIAGNTTSSSSSYAYQGGTNNMAG
GTSPVGLTSPSSLSVYGFQNNLASTSPSVLTTSGGNVHASAGGYGVQKNLSNGGGGVVSS
GVSTTTRSQADDSYKKDYKFLVSDKENAPVKRDAEILILAKDSGKHFTSSSVQMGGGSIS
GDSMMKEKLISSYSETMPLKTEKGNSYYGSSGVVMKDKATYAEIHKENGVFGGGGLCCCS
DACCSWWKWLLGLLLLSLLLLGLLFGLIALAEDVRALKNRVSTLEAESSVTSARTSRFSN
NDINAFGAAGAGGAAHSDNVLHVNAGGGGSTSKTQIGIAAGSGGSSGGNGVDVIVGTGSA
GTAGAGWAGGSIGAGAAGAGTSLSGSSSSGGSTGTSSSRSSGSSGSFGSSGSSGSSGRAG
GTSFSATDLETGGSRGQIDVASLQMTIHQMLRSEMQSQSYRAFLASTVQGERGLPGPKGD
SGFKGDPGFPGIPGAPGAVGRAGPEGQKGQKGSQGDHGQDGAPGVRGREGPAGARGEAGP
SGFGTKGERGAPGDPGPVGPTGQKGVPGVHGLSGAPGIQGFRGEAGEPGPKGDRGLAGLQ
GLKGETGDMGLRGAKGDPGMQGVAGERGPKGSSGDIGPAGPPGLRGPSGPPGDSTSLLGV
SRLQGPPGIPGNPGRPGPKGETGEPGRIINAAGSTSFGIPGPPGPPGPAGPAGPQGLSGP
VGPAGPPGQAGVKGDRGYRGEQGEQAISVRTSENSRLFSASGGSGQPGPPGPPGQPGRPG
DSRQGPPGPPGPPGPTGYGRTGPKGDKGDAGFASSSGTVYSGQPGPPGPPGPYGPKGSTG
SPGPRGFQGDPGQPGVPGIPGSSERVSTYSGGNGIPGPPGPPGRPGLPGPQGIKGDTGAP
GFSGSSRGSISVTSGPPGPAGPPGPPGPTGSFASSSEMRLYINDYLSRSRQSSIPGPPGP
PGPPGIPGTFSGSIDDISARVIAYLQRSGSGFSIGGQGLPGPPGPPGPGSGSLTVSGLIV
MLQRDDVRRYLSGPQGPQGPPGPPGQSGGISSSYNIEEIATYVFNTMRERGIARGPPGPP
GPAGPAGAGGSGFTTATIDYTALMRNSDFRSWINSAVQSGPPGSPGVPGQPGPPGPQGPA
GVSTSTVIGSGGRGYSLEEIQRYLQSSGFRAIPGPPGPQGPQGPQGPPGSYSGLISYDGN
RERLRAEVQEYLTSDVVRRSIVGPPGSPGPRGQKGEQGEPGYIQGYAQSQSYAASDPRYG
SERRSADISRLAENLDYSSVAIKVTDYIKNQGLLQEYLVEGPSRSNVRAIQGPPGPPGPA
GPPGQSRVIGSYGNVTADLMEFFRTYGTISGPPGGPGPKGDRGYPGPRGEKGDPGHPGLA
GLPGAYTVQIPHRVQKRDAGGKVVGHRHRRHSIGG
NT seq
5508 nt
NT seq
+upstream
nt +downstream
nt
atggacgagttaacgagacagatggacttctcagggggcctgtcagaggaaaaggttgtg
cgagaaacggtaacctccacatccagactgacttctctgccaccaaagggaaccagtgga
tcaaatcacaggaacatgtccagcggtgctggggggttgggcttggagaagaatgtctta
acccaaaacagcagtggaacttatttcacttcatcggctgtaggcgtgaacaccaccagc
tacggctcctcttcgggagtctacctgggaggagactcctcaggaggtgatggagggggg
atcttcatagacggagagggcttcggaagcgcagggggaggcggaggaggcgggggaggc
gggggaggcgggggaggcggaggaggcagttatctcgtcagctctgtgtcaaaggtcagg
tccagctcgtcgggtggtgccaggcaggcgcagactgacggctcgtcaggaggcctgtcg
ccagtttcccgggagaggaagaacgtgtccgtccgctcaggaggttatgagggaagttcc
agcggcaattcctccccagagttcactcgtaaagattatggaatctattgctccagcggc
acaagagggaggagcgaaagccgagagagcgcgatcagagcgagattacaaagtgcctct
cccagtgccagcagatggacggagttggatgatgtgaagaagctgctgaagggacgctcc
tgcagcgtcagccccacgcgctcctccaccgcctccatcaccctgcctgtccctaaaaag
gccagcgtggaaaccaagaccatctctgtcgcctgtcagtcgggttcaccaacctcgttt
ggctctggtgtgagatcaaccgggttccagaccattgatacatcaggcttttatgatact
ggtctgacatctgagaagtttgattctggtgtaaaatcaggccactatgatgccaccctg
aaatcagggcaatatgatactggcgttaaatcgggccattatggtgttagtctgaaatca
ggccagtatgatactggtgtgaagtcaggacaatttgacacaagtttaaaatcagggcag
tatgacaccactgtgagatcagcccagtatgatactggtgtaagatcagcccagtatgat
actggtgtaagatcagccctgtatgatactagtgtaagatcagcccagtatgatactggt
gtcagatcagcccagtttgatactggtgtgagatcagtccagtatgatactagtgtgaga
tcaggccagtatgacactggtgtgagatcaagacagtatgacacactggacgctacactt
cccaccttctcttggtccaccacgaccctgccatccgcctccaccacagtgattgctggc
aacaccaccagcagcagcagcagctacgcgtaccaagggggcaccaacaacatggcaggc
gggacgtccccggttggcctcacgtcaccttcttccctgtcagtttatggcttccagaat
aatctggcttctacttcccccagtgtgctcaccactagtggaggcaacgttcatgcctcc
gctggaggttatggcgttcagaagaacttgtcaaatggtggtggtggcgtggtcagctct
ggtgtctctacaaccactagatcccaagctgatgattcgtataagaaagactacaagttc
ctagtctctgacaaggagaacgctccagtcaagagggatgcagaaattctcattttggcc
aaagacagcgggaagcatttcaccagcagcagcgttcagatgggaggaggatcgatatca
ggagattcaatgatgaaagagaagcttatttcaagctacagtgagacaatgccactgaag
acagagaaaggcaactcctactatggttcatctggagttgtaatgaaagacaaagccacc
tatgcagagattcacaaggagaacggcgtcttcggaggtggaggactgtgctgctgctcc
gatgcctgttgctcttggtggaaatggctgctgggtctcctcctcctctccctgctcctg
ctaggactcctgtttgggctcattgcactggctgaagacgtgagagctctgaagaatcga
gtgtctacgctggaggccgagtcctcggtgacctccgcccgtacgagccgcttctctaac
aatgacatcaacgccttcggggcagccggcgccggaggtgccgcgcactctgacaacgtg
ctgcacgtcaacgctggaggcggaggctcaacctccaaaactcaaatcgggattgcagct
gggtccggcggctcgtctggcggaaacggcgtcgatgtcatcgtcggaactggttctgct
ggcactgctggggccggttgggccggcgggtccatcggggccggtgctgcaggcgccggt
accagcttaagtggcagttcaagcagcggtggcagtactggtaccagttccagcagaagt
tctggcagttctggcagttttggcagttccggcagttctggcagttctggccgtgctggc
ggcaccagcttcagtgccaccgatctggagacgggaggaagcagaggacaaatagacgtt
gcttctcttcagatgacaatccaccagatgttaaggagtgaaatgcagtcacagtcatac
agagcttttctagcgtcgacggtgcagggagagagaggactgcctggacctaaaggggac
tctggatttaaaggagatcctggtttccctggaattccaggtgctccgggtgcagttgga
cgtgcaggccctgaaggtcaaaaaggacagaaaggaagccaaggtgatcacggacaggac
ggcgcacccggtgtcaggggtcgcgagggtcctgctggcgccagaggtgaggcaggacct
tcaggctttggaacgaaaggtgaaagaggagcccctggtgatcctggacccgtcggcccg
accggacaaaaaggtgtccctggagttcatggactttctggagcaccaggtatccagggc
ttccgtggtgaggcaggggaacctggacccaaaggtgacagaggccttgctggacttcaa
ggacttaaaggtgaaaccggtgacatgggtctcagaggtgccaaaggtgatcctgggatg
caaggggtggcaggagagagaggacccaaagggtccagtggggacattggacctgctggg
ccacctggactcagaggtccttccgggcctcctggagattcaacttcacttctaggagtc
tctaggcttcaaggaccaccagggataccggggaatccaggaagaccaggccctaaagga
gaaacaggtgaaccaggaagaatcatcaatgcagctggctccacgtctttcggcattcca
ggaccacctggccctcccggtcctgcaggtcctgcaggtcctcaaggattatcaggtccc
gttggccccgctggtccgcccggccaagctggtgttaaaggtgacaggggatacagggga
gagcagggagagcaagcaataagtgtgagaaccagtgaaaactcaaggctgttcagtgcc
agtggaggttcaggacaaccaggcccacccggcccaccgggtcaacctggacgtccaggg
gattcaagacaaggacccccaggaccacctgggcctccaggtcctacaggatatggaaga
acaggacctaaaggagacaaaggagacgcaggctttgcatccagcagtggaactgtatat
agtggacaaccgggaccacctggaccacctggaccttatgggcccaaaggatcaacagga
agtcctggaccaagaggtttccaaggtgatccaggccaaccaggggtgcccggtatcccg
ggaagctctgagagagtgtcgacttacagcggaggaaacgggatccctggaccaccaggt
ccaccgggacgtcctggacttcctgggccacaaggaattaaaggggacactggagctcct
ggcttttctggctcttcaagaggctccatctcagtcacctcaggcccgcctggccccgca
ggtcccccaggtcctccaggcccgacgggctccttcgcatcttctagtgagatgcgtctg
tacatcaatgactacctaagtagaagcagacaatctagtatccccggacctccaggtcca
cctggacctccaggaatcccaggaaccttctcgggctccatcgatgacatctccgctcgt
gtcattgcatatctgcaacgttctggctcaggctttagcattggtggtcagggtcttcca
ggaccacctggtccacctggtcctggctccggatccctgacggtcagcggtctcatcgtc
atgcttcagagagacgatgtgaggcgatatttgtcgggaccacaagggccacagggacca
cctggacctccaggccaatcaggaggcatttcaagcagttacaatattgaggagatagcc
acatatgtcttcaataccatgagagaaagagggattgcaagaggtccgcccggaccgccc
ggtcctgctgggcccgctggtgccggtggatctggcttcaccaccgctacgattgactat
accgcactaatgagaaattcagacttccgctcttggattaattccgcggtacaaagcggc
cctcctggttcgcctggtgtcccggggcaacctggccctcctggtcctcaggggccagca
ggagtctccacttccactgtgattgggtcgggaggtcgtggctacagtttggaggaaatt
cagcgttacctgcagagttctggtttccgagctattcccggccctcctggtcctcagggt
ccacagggacctcagggtccaccaggaagttacagtggattgatttcctatgatggaaac
cgtgagcgtcttcgcgctgaagttcaggagtatctgacgagtgacgttgtccgtcgttcc
atcgttggaccgccgggttctccagggccgaggggtcagaagggagaacaaggagagccg
ggctacatccagggctacgcgcagagccagagctacgccgccagtgaccctcgatacggc
tccgagcgccgcagtgccgacatcagcaggctcgccgagaatctggattactccagcgtc
gccataaaagtcaccgactacatcaagaatcaaggcctgctgcaggagtatctggtcgag
ggcccttcgaggtcaaatgtgagagcaattcaaggcccccccggcccacctggccccgcc
ggaccgcccggtcagagccgcgtcatcggctcctatggcaacgtcacagctgacctcatg
gagttcttcagaacgtacggcaccatctccggacctccggggggccctggaccaaagggt
gacagagggtacccgggacccagaggagaaaagggtgatcccgggcacccaggtttagca
ggactaccaggggcctacactgtccaaattccacacagagtgcagaaaagggatgcagga
ggtaaagtcgttggtcatcgccaccgccgtcactccatcggtggctaa
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