Pungitius pungitius (ninespine stickleback): 119214530
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Entry
119214530 CDS
T07626
Symbol
polr1b
Name
(RefSeq) DNA-directed RNA polymerase I subunit RPA2
KO
K03002
DNA-directed RNA polymerase I subunit RPA2 [EC:
2.7.7.6
]
Organism
ppug
Pungitius pungitius (ninespine stickleback)
Pathway
ppug03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
ppug00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
119214530 (polr1b)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ppug03021
]
119214530 (polr1b)
Enzymes [BR:
ppug01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
119214530 (polr1b)
Transcription machinery [BR:
ppug03021
]
Eukaryotic type
RNA polymerase I system
RNA polymerase I
Core subunits
119214530 (polr1b)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_1
RNA_pol_Rpb2_3
RNA_pol_Rpa2_4
RNA_pol_Rpb2_7
RNA_pol_Rpb2_2
Birna_RdRp_palm
Motif
Other DBs
NCBI-GeneID:
119214530
NCBI-ProteinID:
XP_037322237
LinkDB
All DBs
Position
13:complement(15187132..15192935)
Genome browser
AA seq
1134 aa
AA seq
DB search
MDSSLKWENLPTAPSLKNLTETGFGVLKESQHAAVQDLTKAHIESFDHAITEGLSRAVQA
IPPFEFTFKEDRLTITFVEAAIYTPMVAKGNICKELKVFPAECRGRKCTYKGKMVADISW
SVNGVPKGIIKQSMGQVPIMVKSKLCNLHGLSPKELVEHHEEAEEMGGYFIVNGNEKVIR
MLIMPRRNYPIAMSRPKWKTRGQGYTQYGISMHCVKEEHTAINMNLHYLENGTVMLNFIY
QKELFFLPLGFALKALVDFTDFQIYQELIKGREGNSFYKSCVSEMLRVVMEEGCTTRSKV
LNYLGERFRVKMSLPEWYTNEQCAKFLMDECICIHLKSDTEKFYLLCLMSRKLFTYAKQE
CMEENPDSITFQEVLTPGQLYLMFMKERLTAWLLSVKLSFEKRGKKMRGPVTPEFMMKMF
NMCSDITKPFEYLLATGNLASKTGLGMMQNTGLCVVADKLNFIRYLSHFRCVHRGAAFAK
MRTTSVRKLLPESWGFLCPVHTPDGEPCGLMNHMTAICEIVAATMSTTSLTALLCSLGIT
PVDATPGQAFSDCYPVVLDGMVVGWVEAELAQVVVDSLRRFKVLREKRIPPWTEIVLVPK
TGKASLYPGLFLFTTPCRMVRPVRNLALGKQELIGTFEQLYINVGIMEDEIEPGVTTHQE
LFPHSMLSVVASFIPYSDHNQSPRNMYQCQMSKQTMGFPLHSFMDRSDNKLYRLQTPQSP
LVRPYIYDHYNLDNYPSGTNAIVAVISYTGYDMEDAMIVNKSSWERGFAHGSIYKTELVD
LAEKVRGEDGVVFGTKPGDPKINGKLDADGLPHIGSTLVYGDPFYSYINLNTGQSSIAFY
KNQETCVVDNIKICSSDSGLGRLKRVCITMRVPRNPTIGDKFASRHGQKGILSRLWPAED
MPFTESGMAPDILFNPHGFPSRMTIGMLIESMAGKSGALHGLSHDATPFTFSEENRALEY
FGKMLRAGGYNYYGTERLYSGVSGQELEADIFIGVVYYQRLRHMVSDKFQVRTTGARDKL
TNQPVGGRNIQGGIRFGEMERDALLAHGSSFLLHDRLFNCSDRSVTQVCVDCGSLLSPLL
EKPPPYWSALRHRKIVCVLCGKSDSVDSVSVPYVFRYFVAELAAMNIKVKLDIK
NT seq
3405 nt
NT seq
+upstream
nt +downstream
nt
atggactcctcacttaagtgggagaatttgcccacagctccgagtttaaagaatttgaca
gagactggattcggtgtcctgaaggagtctcaacacgctgctgttcaggacttgaccaaa
gctcacatcgagtcgtttgaccacgcgatcactgaagggctcagccgggctgtgcaggcc
atccctcccttcgagttcaccttcaaggaggaccggttgaccattacgtttgttgaggcc
gccatctacaccccaatggtcgccaaagggaacatctgcaaggagctgaaggtgtttcca
gcagagtgcagggggaggaaatgtacatacaaagggaagatggtggcagatatcagctgg
tcagtcaacggagtccccaaaggcatcattaaacagtccatgggtcaggtgccaatcatg
gtcaagtccaagctgtgtaacctgcacggcttgtcccccaaagagctcgtagaacaccat
gaagaggccgaggaaatgggaggctatttcattgtgaatggaaatgagaaggttatccgt
atgctgatcatgccaaggaggaactatcccattgctatgtcgagaccaaagtggaagacc
aggggccaaggatacacccagtatggtatttccatgcactgcgtgaaggaagaacacaca
gccattaacatgaatctacattatttggaaaacgggactgtgatgctgaacttcatatac
cagaaagagcttttcttcctcccactcggctttgcacttaaggccctggtcgactttaca
gattttcaaatataccaggaactgatcaagggccgcgagggtaattccttctataaaagc
tgtgtgtctgagatgctgcgtgttgtcatggaggagggctgcaccacccgcagcaaggtg
ctaaattacctgggagagcgtttcagggttaagatgagccttcctgagtggtacacaaat
gagcagtgcgccaagttcctgatggatgagtgcatctgtatccacctaaagtcagacacg
gagaagttctacctgctctgtctgatgtccaggaaacttttcacgtatgccaagcaggag
tgtatggaggagaaccccgacagcatcacgtttcaggaagtgctcactccgggtcaactc
tatctcatgtttatgaaggagagattgacggcctggttgctgtctgtgaagctgtccttt
gaaaagagaggcaaaaagatgaggggaccagttacccctgagttcatgatgaagatgttc
aacatgtgctctgatatcaccaaaccctttgaatatctgttggccacagggaacctcgcc
tccaagacaggccttggcatgatgcagaacacgggcctttgtgttgtagccgacaagctc
aacttcatccggtacctgtcccactttcgctgtgtgcacagaggggcagcgtttgccaag
atgaggaccacttctgtccgtaagctgctgcccgagtcctggggcttcctatgtcccgtg
cacactccagatggggagccttgtgggctcatgaaccacatgaccgccatctgtgagatt
gtggcagcgaccatgtccaccacatcgctgactgcgttgctgtgttctctcggtattact
ccagtggatgcaacccctggccaagctttttccgactgctaccctgtggtcctggacggg
atggttgtgggctgggtagaggctgaattagcccaagttgtggttgactcgctgcgcagg
ttcaaggtgctacgagagaagaggatccctccctggacggagattgttctggttcctaaa
acaggaaaggccagcttgtacccaggactgttcctcttcacaaccccttgccgtatggtg
cgacccgtacgcaacttggctcttggcaagcaagagttgattggcacctttgaacaactg
tacatcaatgtgggcatcatggaggatgagatcgaaccaggggtgaccactcaccaggag
ctcttccctcacagcatgctcagcgtggttgctagcttcatcccctattctgaccacaac
cagagtcctaggaacatgtaccagtgtcagatgagtaagcagactatgggtttccccctg
cactcattcatggaccgctcggataacaagctgtaccgcctccagacccctcagagccca
ttggtcaggccctacatttacgaccactacaacctggacaactaccccagcggcacaaac
gccattgtggccgttatatcctacacaggctacgacatggaagatgccatgattgtgaac
aagtcatcgtgggagaggggctttgcccatggaagtatctacaagactgagctggttgac
ctggcagagaaagtgaggggagaggacggcgtggtgtttggaaccaagcctggggacccc
aaaataaatggcaaactggatgctgatggacttccacacatcggatcaacacttgtgtac
ggagacccgttctacagctacatcaacctcaacacaggccagagctctatcgcgttctac
aagaaccaggagacctgcgtcgtggacaacataaagatctgcagcagtgacagcggcctc
ggccgccttaaacgcgtctgcatcaccatgcgagtgccacgaaaccccaccatcggggac
aagttcgccagtcgccacggccagaagggcatcctgagtcgcctgtggccggccgaggac
atgcccttcacagagagcggcatggctcctgacatcctgttcaacccccacggcttcccc
tcccgcatgaccatcgggatgctgatcgagagcatggccggcaagtcgggcgccctccac
ggcctgagccacgacgccacgcccttcaccttctctgaggagaaccgtgcgctcgagtac
ttcggcaaaatgctccgggcgggaggatacaactactacggcacggagcggctctacagc
ggagtgagcggccaggagctcgaggccgacatcttcatcggggtggtctactaccagcgg
ctgcgtcacatggtctccgacaagttccaggtgagaaccaccggagcgagggacaagctg
accaaccagccagtaggaggcaggaacattcagggagggatccgtttcggagagatggag
cgcgacgccctgctggcccacggctcgtctttcctgctgcacgatcgcctcttcaactgc
tccgaccggtcggtgacgcaggtgtgcgtggactgtggcagcctgctctcgcctctgctg
gagaaacccccgccctactggtcggccctgcgccaccgtaagatcgtgtgcgtgctgtgc
gggaaaagtgactctgtcgactcggtgtcagttccttacgtcttccgctactttgtggct
gagctggcggcaatgaacatcaaagtcaaattagacataaagtga
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