Pungitius pungitius (ninespine stickleback): 119214556
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Entry
119214556 CDS
T07626
Symbol
vps8
Name
(RefSeq) vacuolar protein sorting-associated protein 8 homolog isoform X1
KO
K20178
vacuolar protein sorting-associated protein 8
Organism
ppug
Pungitius pungitius (ninespine stickleback)
Pathway
ppug04148
Efferocytosis
Brite
KEGG Orthology (KO) [BR:
ppug00001
]
09140 Cellular Processes
09141 Transport and catabolism
04148 Efferocytosis
119214556 (vps8)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
ppug04131
]
119214556 (vps8)
Membrane trafficking [BR:
ppug04131
]
Endosome - Lysosome transport
Tethering complex
CORVET complex
119214556 (vps8)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Beta-prop_VPS8
TPR_Vps8
VPS8_N
zf_RING_Vps8
TPR_Vps41
Clathrin
Beta-prop_WDR36-Utp21_1st
WD40_CDC20-Fz
TPR_VPS8_2
zf-RING_Vps41
zf-RING_UBOX
zf-RING_11
zf_RING_Vps8_fungal
zf-RING_5
zf-RING_2
Beta-prop_WDR5
Beta-prop_THOC3
PHD_4
zf-C3HC4
Beta-prop_EML_2
zf-C3HC4_2
Beta-prop_WDR3_1st
WDR55
Beta-prop_HPS5
zf-rbx1
zf-C3H2C3
PHD
EIF3I
SLX1_C
Motif
Other DBs
NCBI-GeneID:
119214556
NCBI-ProteinID:
XP_037322281
LinkDB
All DBs
Position
13:18141285..18174825
Genome browser
AA seq
1404 aa
AA seq
DB search
MSESPDARSLLSASSQLNLTEMDAIDDKEFDIPQVDTPPTLESILNELEDEEEPFVLEDT
CLLNTDNMDAHSCDTSSLASSDSGDPAQLKRRRRTVDLNATAHGSVLRHSLLKGISAQIV
SAADKVDAGLPTAITVAGVIAVGTSHGLALVFDTNQALRLCLGTKATGAEFGAVSALSIN
HDCSRLLCGFAKGQITMWDLASGKLLRTITDAHPPGTAILHVKFTDDPTLAVCNDSGGSV
FELSFRRVMGMRSCDSRCLFSGSKGEVCCIEPLRAPPDFRDHPITLYSLLAMASLTKILV
IGLKPSLKVWMTLPYSKSDPASVPQLAWQFVPVQKTINPILAFCKGDSVHFLLVKQEETG
TIHVIKQKQLHLSCDIISLSWINSRTLVLVDSHEKLQVVDRPSQEVLETLDLEQVQLVYN
SRHFKSLATGGNVSQALALVGEKACYQSVSSYAGQIVYLGTKSAHIMTLRNWRERLDCLL
KQEHFVEALSLAWSFHEGTAKAVVGLLGDQTKKKGVVGDKMVEILFQFADNALKKCPEQG
KIQVMEQHFHEVVPVLVDYCLLLKRADLMFNQLYAQLGENTVAKGVFLESLESYIVGDRL
GHLTTPIMRDLLAHYHSNGMMDSLERCIVHLDVTSLDIQQVVQVCWENQLYDAMIYVFNS
GMNDYITPMEKLFAVIGPQLRAGRSLKDEEVVMGNKILVYISCCLAGRAYPLGDIPEDLV
VQVKNQVFEFLIRLHSADSLEEEEVFPFIRTLLHFDSREFLNVLAMTFEDFKNDKQALEY
QQRIVDILLQVMVDNPDFTPSQVGGLFTFLARQLAKPDNTLFVNRKLFDQVLEFLCGPDD
GCRHTERQQVLLELLQVGGVVQFNEGRLLTLAEKAKFYQICEFLYEKKHSYDKIIDCYLR
DPLRKEEIFSYIHNLLSLPGYSPEEKQTVRDKALQHIQELVTLDPSKSADLVVFHFANEV
QQIISELQDELLFQFLRCLLETREGHHSGTTLPLEQDLHELLLDLMCCYGPQQLLSFLQT
SQHYRLEEAIQITQKYHHNEATAYLLEKKGDVHGAFAVLLETLKETLSCLMAESERKVDG
GEGRGDEEERDDESSLTAVKDSLNDIIVLCHRNSDSFYQQQREVLWFPLLETMMASQKRV
KALNDDHTFEVLKELTMKVLNCMSSFISLPAIIQRILQDPVYGKGKLAEIQGLILGMLDT
FNYEQTLLETTTSLLNHDLHWSLAHLRAAVTRGLHPRQDFCNICLQQYKRRLDSAEEIIV
FSCGHLYHYQCLQQKDSGWGLTPELPRRWSCYKCSSSQGGRGGPSTEPKRSRSTSLAQTR
VTSVHHDAGADAHRKKVFVNTTLDLQQQQSWDQLRCLYRGPSRLSVLTELSHCHSTDKTG
LLMAAQSGTDHFQLKLSPPPLLEE
NT seq
4215 nt
NT seq
+upstream
nt +downstream
nt
atgtcagagtctccggacgcccgcagcctcctctccgcttcctcccagctcaacctgacg
gagatggacgcgattgatgataaggagtttgacatccctcaagtagacacacctcccaca
ctggagagcatccttaatgagctggaggatgaggaggaaccttttgtgttggaggatacc
tgcctgctgaacacagacaacatggatgctcattcctgtgacacctcctctttggccagc
tctgacagtggagacccagcacaactcaaaaggaggaggaggacagtggatctaaatgcc
accgctcatgggtctgttcttcggcacagcctgctgaagggcatttctgcacagatcgtt
tcagctgctgacaaagttgatgctggactgccaactgctataacagtggcaggtgtgatt
gcagtaggaacatcgcacggtctcgctctggtctttgatactaaccaggccctgcggctc
tgtctggggaccaaggcaacgggggcagagtttggagccgtctctgccctcagcatcaac
cacgattgctcgcgacttctctgcgggtttgccaaaggacagatcacaatgtgggattta
gccagtgggaagctcctgagaacaatcaccgatgcacacccgccagggacagctatactg
catgtgaagttcacagacgacccaactcttgcagtgtgcaatgacagtggaggatccgtc
tttgagctttctttcaggagggtgatggggatgcgttcctgtgactcccgatgtctcttc
agtggttctaaaggagaagtgtgctgtatagaaccgctgcgtgctcccccagacttcaga
gaccaccccatcacactgtactctctgctggccatggcctctctcactaagattctggtc
attggactaaagccgtctctgaaagtctggatgactcttccctacagcaagtcggacccg
gccagtgttcctcagctcgcctggcagtttgttcctgttcagaagaccatcaacccaatc
ttggctttttgtaaaggagattcagtccacttcctcctggtgaagcaggaggagacgggg
accatccatgtcatcaaacagaaacaactccacctaagctgtgacatcatcagcctaagt
tggatcaacagtcgtacactggtgctggtagacagccatgagaagctgcaggtggtggac
cggcccagtcaggaagtgttggagaccctggacttggagcaggtgcaactggtctataac
agccgacatttcaaatcgctggcaactggagggaatgtctcccaggctctggctttagtg
ggagaaaaggcctgctaccagtctgtgtcgagctacgcaggacaaattgtctatctgggc
accaagtcggctcacattatgactctgcggaattggagagagcgcctcgactgcctgctg
aagcaggagcatttcgtggaggctctctctctggcctggtccttccacgagggaactgct
aaagctgtggtcggcctgttgggagatcaaacaaagaagaaaggagtcgtaggcgacaag
atggtagagatccttttccagtttgcagacaacgctttgaagaagtgtccagaacaagga
aagatccaagtgatggagcagcatttccatgaggtggttccagtcctggtggattactgc
cttctgctgaagagggccgacctgatgttcaaccagctgtatgctcagctgggggaaaac
acggttgctaaaggcgtctttctggagtctctggagtcgtacattgttggcgaccgtctt
ggtcacctcaccacgcccatcatgagggacctcctggcccattaccatagcaacggtatg
atggacagcctggagagatgcattgtccatctggatgtgaccagcctggatatacagcag
gtggttcaagtgtgttgggaaaaccaactctatgatgcaatgatctacgtcttcaacagc
ggcatgaatgactacatcacaccgatggaaaaactctttgcagtgattggcccacaactt
agagcggggaggagcctaaaagatgaggaagtggtgatgggaaacaaaattctggtgtac
ataagctgctgtctcgcaggaagggcatatccactcggagacatccctgaagatctcgtg
gttcaagtcaagaaccaggtgtttgagttcctcatccgtctccattcggccgactcgttg
gaggaagaggaggttttcccgtttattcgtacactcctccactttgattcacgcgagttc
ctcaatgtcctcgccatgacatttgaagactttaagaatgataagcaggcccttgagtac
cagcagaggatagtggacatcttacttcaggtgatggtggacaacccagactttactcca
tcccaggtgggcgggctcttcacgtttttggctcgccagttggccaagccagacaacacc
ctttttgtgaacaggaagctctttgatcaggttctggagttcctgtgtggtccagacgat
ggctgtagacacactgagaggcagcaggttttgctggagctgctgcaggtggggggggtg
gttcagtttaatgagggaaggctgttgactctggcggagaaggccaaattctaccaaatc
tgtgaatttctttatgaaaagaaacattcatatgacaagatcattgactgctacctgaga
gaccccctcagaaaggaggagatcttcagctacatccacaacttgctgtctttgcccggc
tacagccctgaggagaagcaaacggtcagggacaaagcacttcaacacatacaggagctg
gtgacccttgaccccagcaagtcggctgacctggtggtttttcactttgctaacgaggtg
caacaaatcatcagtgagcttcaggatgaactacttttccagttcctcagatgcctcctg
gaaacacgggaaggccatcattcagggaccaccctgcctctggaacaggacctccatgag
cttctgctggacttaatgtgctgctatggcccccagcagcttctgagcttcctccagacc
tcccagcactacaggctggaggaggccatacagattacacagaagtaccaccacaatgag
gctactgcatatctgctggagaagaagggagacgttcatggagcttttgctgtcttgtta
gagacattgaaggaaacactaagttgcctcatggctgagagtgaaagaaaagttgatgga
ggagaaggaagaggtgatgaagaggagagagatgatgaatcatcactgacggcggtaaag
gattcgctgaatgacatcattgtcttatgtcatcggaactctgacagcttctaccagcag
caaagagaggttttgtggtttcctcttctcgagaccatgatggcttctcaaaagcgagtg
aaggcactcaatgatgatcacacgtttgaggtgctgaaggagctgacaatgaaggttctc
aactgtatgagcagctttatctcgctgcctgccatcatccaacgaatactgcaggacccc
gtttatgggaaagggaagctggcagagatccaaggcctcatcctgggcatgctggacacg
ttcaactatgaacagactttacttgaaacaaccactagccttttgaatcatgacctccat
tggtccctcgctcacctgcgcgctgccgtcacaaggggacttcacccacgacaagacttc
tgtaacatctgcctccagcagtacaaaaggaggctggactctgctgaggagatcattgtg
ttcagctgtggccacctgtaccactaccagtgcctgcagcagaaggactctgggtggggt
ttgactccagagctgccaaggaggtggagctgctacaaatgctcctccagccaaggagga
aggggcgggccttccaccgagccaaagagaagccgcagtacatccctggcacagacccgt
gtaacatcagtgcatcatgacgcaggagcagacgctcacaggaagaaggtgtttgttaat
acaacgttggacctccagcagcaacagtcctgggatcagctgcggtgtttataccgagga
ccatccaggttgtccgtccttacagaactgtcccactgccacagcactgataagacggga
cttctgatggcagcccaaagcggaacagatcatttccaactcaaactgtctcctccaccc
ttactggaggagtag
DBGET
integrated database retrieval system
