Pungitius pungitius (ninespine stickleback): 119215069
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Entry
119215069 CDS
T07626
Name
(RefSeq) clathrin heavy chain 1-like isoform X1
KO
K04646
clathrin heavy chain
Organism
ppug
Pungitius pungitius (ninespine stickleback)
Pathway
ppug04142
Lysosome biogenesis
ppug04144
Endocytosis
ppug05100
Bacterial invasion of epithelial cells
Brite
KEGG Orthology (KO) [BR:
ppug00001
]
09140 Cellular Processes
09141 Transport and catabolism
04144 Endocytosis
119215069
04142 Lysosome biogenesis
119215069
09160 Human Diseases
09171 Infectious disease: bacterial
05100 Bacterial invasion of epithelial cells
119215069
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
ppug04131
]
119215069
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
ppug04147
]
119215069
Membrane trafficking [BR:
ppug04131
]
Endocytosis
Clathrin-mediated endocytosis
Clathrin
119215069
Exosome [BR:
ppug04147
]
Exosomal proteins
Proteins found in most exosomes
119215069
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Clathrin
Clathrin_propel
Clathrin_H_link
Clathrin-link
TPR_COPA_B
TPR_PEP5_VPS11
VPS18_solenoid_2nd
TPR_Vps41
Ig_TRAPPC10_3rd
Motif
Other DBs
NCBI-GeneID:
119215069
NCBI-ProteinID:
XP_037322798
LinkDB
All DBs
Position
3:4155678..4176015
Genome browser
AA seq
1678 aa
AA seq
DB search
MAQILPIRFQEHLQLQNLGINPANIGFSTLTMESDKFICIREKVGEQAQVVIIDMADPNN
PIRRPISADSAIMNPASKVIALKAAKTLQIFNIEMKSKMKAHTMTDDVTFWKWISLNTVA
LVTDNAVYHWSMEGDSQPIKVFDRHSSLAGCQIINYRTDAKQKWLLLIGISAQQNRVVGA
MQLYSVDRKVSQPIEGHAAGFAQFKMEGNTEESTLFCFAVRGQAGGKLHIIEVGTPPTGN
QPFPKKAVDVFFPPEAQNDFPVAMQISSKQDVVFLITKYGYIHLYDLETGTCIYMNRISG
ETIFVTAPHEPTAGIIGVNRKGQVLSVCVEEENIIPYITNVLQNPDLALRMAVRNNLAGA
EELFARKFNTLFAAGNYSEAAKVAANAPKGILRTPDTIRRFQSVPAQPGQTSPLLQYFGI
LLDQGQLNKFESLELCRPVLQQGRKQLLEKWLKEDKLECSEELGDLVKSVDPTLALSVYL
RANVPNKVIQCFAETGQFQKIVLYAKKVGYTPDWIFLLRNVMRISPEQGLQFSQMLVQDE
EPLSDITQIVDVFMEYNLIQQCTSFLLDALKNNRPMEGPLQTRLLEMNLVHAPQVADAIL
GNQMFTHYDRAHVAQLCEKAGLLQRALEHYTDLYDIKRAVVHTHLLNPEWLVNFFGSLSV
EDSLECLRAMLSANIRQNLQICVQVASKYHEQLSTQSLTELFESFKSFEGLFYFLGSIVN
FSQDPEVHFKYIQAACKTGQIKEVERICRESNCYDPERVKNFLKEAKLTDQLPLIIVCDR
FDFVHDLVLYLYRNSLQKYIEIYVQKVNPSRLPVVIGGLLDVDCAEDVIKNLILVVRGQF
STDELVAEVEKRNRLKLLLPWLEARIHEGCEEPATHNALAKIYIDSNNNPERFLRENPFY
DSRVVGKYCEKRDPHLACVAYERGQCDQELIHVCNENSLFKSLSRYLVRRKNPELWASVL
LETNNYRRPLIDQVVQTALSETQDPEEVSVTVKAFMTADLPNELIELLEKIVLDNSVFSE
HRNLQNLLILTAIKADRTRVMEYINRLDNYDAPDIANIAISNELFEEAFAIFRKFDVNTS
AVQVLIEHIGNLDRAYEFAERCNEPPVWSQLAKAQLQKGLVKEAIDSYIKADDPSAYMEV
GQAAAQSGNWEDLVKFLQMARKKARESYVETELIFALAKTNRLAELEEFINGPNNAHIQQ
VGDRCYDDKMYDAAKLLYNNVSNFGRLASTLVHLGEYQAAVDGARKANSTRTWKEVCFAC
VDGKEFRLAQMCGLHIVVHADELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTEL
AILYSKFKPQKMREHLELFWSRVNIPKVLRAAEQAHLWGELVFLYDKYEEYDNAIITMMN
HPSDAWKEGQFKDIVTKVANVELYYKAIQFYLEFKPLLLNDLLIVLSPRLDHSRAVNFFS
KVKQLPLVKPYLRSVQNHNNKSVNEALNNLFIVEEDYAAVRASIDAYDNFDNITLAQGLE
KHELIEFRRIAAYLFKGNNRWKQSVELCKKDKLYKDAMQYASESKDIELAEELLAWFLTE
DKKECFAACLFTCYDLLRPDVVLETAWRHNLMDFSMPYFIQVMREYLSKVDKLEASESLR
KQEEQATESQPIVYGTPQLMLTAGPNGAVPPQQQPYGYGYPAAPGYGQPPQPGFGYGM
NT seq
5037 nt
NT seq
+upstream
nt +downstream
nt
atggcccagatcctacccatccgcttccaggagcacctgcagctccagaacctgggaatc
aacccggccaacattggattcagcactctaaccatggagtccgacaagttcatctgtatc
agagagaaagtgggtgagcaggcccaggttgtcatcatcgacatggccgaccccaacaat
cccatccgcaggcctatctctgcagacagcgccatcatgaaccctgccagcaaagtcatt
gcccttaaagcggcaaagaccctgcagatcttcaacatcgagatgaagagcaagatgaag
gctcacaccatgacggacgacgtgaccttttggaagtggatatccctcaacaccgtcgcc
ctggtgacggacaacgccgtgtaccactggagcatggagggcgactcccagccgattaaa
gtcttcgaccgtcactccagcctggcaggctgccagatcatcaactaccgcaccgacgcc
aagcagaagtggttgctgctcattggcatctcagcgcagcaaaaccgtgttgtgggggcc
atgcagctgtactctgtggacaggaaggtgtctcagcccatcgagggtcacgccgctggc
tttgcacagttcaagatggagggcaacaccgaagagtccaccctgttctgctttgccgtg
cgagggcaagcaggaggaaagctgcatatcattgaggtggggactccacccactgggaac
cagccatttccaaagaaagctgtggacgttttctttcccccagaagctcaaaacgacttc
cccgttgcaatgcagatcagttccaagcaggacgtggtcttcctcattaccaaatatggc
tacatccacctgtatgacctggagaccggaacctgcatctacatgaacaggatcagcggg
gagaccatttttgtcactgccccccatgagcccaccgcgggtatcatcggagtcaacagg
aagggacaggtgttgtcggtgtgcgtggaagaggaaaacatcattccctacatcaccaat
gtgctccagaacccggacctggccctccgcatggcggtccgcaacaacctcgccggggcc
gaggagctgtttgcccgcaagttcaacaccctcttcgcagcggggaattattccgaggcc
gccaaggtggcggccaatgcacccaagggtatcctgcggaccccagacaccatccgtcgg
ttccagagcgttccggcccaaccgggccagacgtctcccttgctccaatactttggcatc
ttgctggaccaaggtcaactgaataagtttgagtctctggagctgtgcaggcccgtcctc
caacagggccgcaagcagctcctggagaaatggttgaaggaggacaagctggagtgctct
gaggagctcggagacttggtgaagtctgtggaccccactcttgccctcagcgtctacctc
agagccaacgtccccaacaaggtcattcagtgctttgcagagactggacagttccaaaag
attgtcctctatgccaagaaggtgggctacactccagactggatctttctgcttaggaac
gtgatgcggatcagtccagaacagggccttcagttttcccagatgctggttcaggatgaa
gaacccctttcggacattacacagattgttgatgtgttcatggagtacaacctgatccag
cagtgcacatccttcctcttagatgccctgaagaataacagacccatggagggaccactg
cagacacgcctgctggaaatgaatctggtgcacgcaccacaggttgcagacgccatcctg
ggcaatcagatgttcacccactacgaccgtgctcatgtggctcagctgtgtgagaaggcc
gggctcctgcagagggcgctggagcattacaccgacctgtatgatattaagcgtgcagtg
gtgcacacacaccttctcaacccagagtggttggtgaatttcttcggctccttgtcggtg
gaggactccctggagtgtctgagggccatgctgtctgcaaatatccgccagaacctgcag
atttgtgtgcaggtggcctccaagtaccatgaacagctctcgactcagtccctcactgaa
ctttttgagtcattcaagagctttgagggtttgttctatttcttgggttctattgtgaac
ttcagtcaggatccagaggtccacttcaaatatatccaagccgcctgcaagacaggccag
atcaaggaggtggagagaatctgtcgagaaagtaactgctacgaccctgagcgtgtgaag
aacttcctcaaggaggccaagctgactgaccagctgcctttgatcatcgtgtgtgaccgc
tttgactttgtccacgatctggtgctgtacctgtaccgcaacagcctgcagaaatacatt
gagatctacgtgcagaaggtgaacccaagccgtctgccggtagtcattggaggcttactg
gatgtagattgtgctgaggacgtgattaagaacctgattctggtggttagagggcagttc
tccacagatgaactggtggctgaagtggagaaaagaaatcgtctaaagctgctgctgcct
tggttggaggctcgtattcatgaaggctgtgaggagcctgctacccacaatgccctggcc
aagatctacatcgacagcaacaacaacccagagcgattcctgagggagaaccccttctat
gacagccgtgtggtgggaaagtactgtgagaaaagagacccccacctggcctgtgtggcc
tatgaaagaggacagtgtgaccaggaactgattcatgtgtgcaatgagaactctctgttc
aagagcctctcccgctaccttgtacgccgcaagaaccctgagctgtgggccagtgtgctg
ctggagaccaacaactacagaagacccctcatcgaccaggttgtccagacggccttgtct
gagactcaggatcccgaggaggtgtccgtcacagtcaaggccttcatgactgctgacctt
cccaatgagctcatcgagctcctggagaagattgtgctggataactctgtcttcagcgag
cacagaaacctccagaatctgctcatcctgacagccatcaaagctgatcggacacgcgtt
atggagtacatcaaccgcctggacaactacgacgccccggacatcgcaaacatcgccatc
agcaatgagctcttcgaggaggcttttgctatttttagaaaatttgatgtcaacacctct
gctgtgcaggttctgatcgagcacatcggcaacctggaccgagcttacgagtttgccgag
cgctgcaatgagccaccggtgtggagtcagctggccaaggcccagctccagaagggcctg
gtcaaagaagccattgactcttacatcaaggccgatgacccctctgcttacatggaggtg
ggacaagccgcggcccagagtggaaattgggaggacctggtgaagttcctgcagatggcc
cgtaagaaggcccgcgagtcgtacgttgaaaccgagctgatttttgccctggccaagacc
aaccgcctggctgagctggaagagtttatcaatggacccaacaatgctcacattcagcag
gtgggtgaccgttgctatgacgacaagatgtacgacgcagccaagctgctttacaacaac
gtgtccaactttggccgcctggcctccactctggtgcacctgggagagtaccaagcagct
gtggacggagcccgcaaggccaacagcactcgtacctggaaagaggtgtgctttgcgtgt
gtcgatgggaaagagttccgcctcgcccagatgtgtgggctgcatattgtcgtccacgct
gatgagctggaggaacttatcaactactaccaggaccgtggttactttgaggagctgatc
accatgctggaagccgccctggggctggagcgggctcacatggggatgttcactgagctg
gccatcctctactccaaattcaaaccccagaagatgagggagcacctggagctcttctgg
tcccgtgtcaacattcccaaggttctcagggcagcggagcaggcccacctctggggggag
ctggtgttcctctatgacaagtacgaagagtacgacaacgccatcatcaccatgatgaac
cacccatctgatgcttggaaggaaggccagttcaaagacattgttaccaaggtggccaat
gtggagctgtactacaaggccatccagttttatctggagttcaaaccgctgttactgaac
gacctgctcatcgtgctttctccaagacttgaccactcacgcgccgtcaacttcttcagc
aaggtgaaacagctgcctctggttaaaccttacctacggtccgtccagaatcacaacaac
aagtcagtgaacgaggccctgaacaacctcttcatcgtcgaggaagactacgcggctgtg
cgtgcttccattgacgcctatgacaacttcgacaacatcactctggcccagggcctcgag
aagcacgagttgattgagttcaggaggattgcggcctaccttttcaagggcaacaaccgc
tggaaacagagtgtcgagctctgcaagaaggacaagctctacaaggacgccatgcagtac
gcctccgagtccaaagacatcgagctggcggaggagctcctggcctggttcctgaccgag
gacaagaaggagtgtttcgccgcctgcctcttcacctgctacgacctgctgcggcccgac
gtggtgctggagaccgcctggcgacacaacctcatggacttctccatgccatacttcatc
caggtcatgagggagtatctctctaaggtcgacaaactcgaggcctccgagtccctgagg
aaacaggaggagcaggccaccgagtcccaaccgattgtttacggcaccccccagctgatg
ctcacggcggggcccaacggggccgtgcctccccagcagcagccctacggctacggctac
ccagcagccccgggctacggccagcccccgcagcccggcttcggttacggcatgtga
DBGET
integrated database retrieval system
