Pungitius pungitius (ninespine stickleback): 119215258
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Entry
119215258 CDS
T07626
Name
(RefSeq) replication protein A 70 kDa DNA-binding subunit-like isoform X1
KO
K07466
replication factor A1
Organism
ppug
Pungitius pungitius (ninespine stickleback)
Pathway
ppug03030
DNA replication
ppug03420
Nucleotide excision repair
ppug03430
Mismatch repair
ppug03440
Homologous recombination
ppug03460
Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:
ppug00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
119215258
03420 Nucleotide excision repair
119215258
03430 Mismatch repair
119215258
03440 Homologous recombination
119215258
03460 Fanconi anemia pathway
119215258
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
ppug03000
]
119215258
03032 DNA replication proteins [BR:
ppug03032
]
119215258
03400 DNA repair and recombination proteins [BR:
ppug03400
]
119215258
Transcription factors [BR:
ppug03000
]
Eukaryotic type
Zinc finger
Cys2His2 others
119215258
DNA replication proteins [BR:
ppug03032
]
Eukaryotic type
DNA Replication Elongation Factors
RPA (replication protein A)
119215258
DNA repair and recombination proteins [BR:
ppug03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
RPA (replication factor A)
119215258
MMR (mismatch excision repair)
119215258
DSBR (double strand breaks repair)
HR (homologous recombination)
119215258
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rep_fac-A_C
REPA_OB_2
Rep-A_N
tRNA_anti-codon
POT1
DUF223
Motif
Other DBs
NCBI-GeneID:
119215258
NCBI-ProteinID:
XP_037323164
LinkDB
All DBs
Position
16:complement(10599135..10628136)
Genome browser
AA seq
619 aa
AA seq
DB search
MSVELTKGAVEALINSPQADSDIILQLLNIRQLSNSSGPPRFRLFMSDGQHSSPSFLLAT
QMNHLKEDNLLEPNCVCIVKKTINNTLADGRCVVVVLDMEILQSAGETGGRIGNPTLYDA
TGKKCSPQKPSSGPSVPASPPSAAVPGSSNKKNTTLSSPRGHEKHFVGKSPMKTSPAKAS
NASPSSSAKVMPIASLNPYQSKWTIRARVTNKSSIRTWSNSRGEGKLFSFEIVDESGEIK
ITAFNNEVDKFFSLVEQGKVYFITKATLKVANRQYTTLKNDYEMTLQAHSSIVPCDDTGG
IPAVLCDFVPIAELENREKDTVVDVIGVCKSAEDVSRITTKTSREVSKRALHLIDPTGKE
VTATLWGEEAEKFDGSQQPVVAIKGARLSDFGGRSLSALFSSTVMVNPDLPEAFSLRAWY
DQGGYAIDCQSLTETRSVGSGAKTNWKTLSDVKSEQLGQGEKADYFTCLASVVYIRKENC
LYRACPSAECNKKVVDQQNGLYRCEKCNQEFPNFKYRLLLSANLADFGDNQWVTCFQETA
EVLLGHSAETLGQLRDTDETAFEEVFQKTNFTTHIFRNRVKLETYNDESRVKVTVMEVLP
VDHREYSRRLLSNIRKLAS
NT seq
1860 nt
NT seq
+upstream
nt +downstream
nt
atgagtgttgaactcacaaagggagccgttgaagcactgatcaacagcccacaggcggac
agtgacatcattctgcagttgctgaatatccgtcagctttcaaatagttctggtcctccc
cggttccggctcttcatgagtgatggccagcactcttcgccttccttcctgttggctaca
caaatgaaccatctgaaggaagacaacctcctggaacctaactgtgtgtgtatcgtgaag
aagaccatcaacaacacgttggcagatgggaggtgtgtggtggttgtgctggatatggag
atactgcaatcggccggggaaactggagggaggattgggaatcccactctatatgatgca
actggtaagaaatgctctccgcagaagcccagctcaggtccttctgtcccggcatcccct
ccgtcggcagcagtacccggatcctccaataagaaaaacaccaccctttcttctccacga
ggccatgaaaaacattttgtgggaaagtcacccatgaagacgtcccccgcgaaggcctct
aatgcttctccaagttcttcggcaaaagtgatgcctattgcaagtctcaacccctaccag
agcaagtggactatcagagcacgcgtcaccaacaaatccagtatccgcacctggagtaac
tcgagaggagagggcaagctcttctcctttgagatagtggatgagagtggagaaatcaag
atcacagccttcaacaatgaagtggacaagtttttctctctagttgagcagggcaaggtg
tacttcatcaccaaggccacgctgaaggtggccaacagacagtacaccacactgaagaac
gactatgagatgaccctccaggcacattcatccatcgtgccatgtgacgacactggaggc
atccccgctgtgctctgtgactttgtgcccatcgctgagttggagaacagagaaaaggac
accgtcgttgatgtgattggagtgtgtaagagtgcggaggatgtatctcgtatcaccacc
aagaccagcagagaagtctccaagagggcactgcacctgatagaccccactggcaaagag
gttacagccacgctgtggggagaggaggcggagaagtttgacggctctcagcagccggtg
gtcgcgatcaaaggcgctcgcttgtctgattttggaggccgatctctctctgctttgttc
agctcaacagtcatggtcaacccagacttaccggaggcgtttagtctgcgggcctggtac
gaccagggaggctatgcgatcgactgccaatcactgacggagacgaggtcagtgggcagc
ggagcgaagacgaattggaaaacgctgagtgacgtcaagagtgaacagttgggacaagga
gagaaggcggactacttcacctgtttggcatcggtggtgtacattcgtaaggagaattgt
ctgtaccgggcgtgtccgtctgcagaatgcaataagaaggtggtcgaccagcagaacgga
ctctaccgctgcgagaagtgtaaccaagagttccccaacttcaaatacagactcctgctc
tccgccaacttggcggacttcggggataaccagtgggtgacttgcttccaggagacagct
gaggtcctgttaggtcacagcgcagaaacactgggacagctcagagacaccgacgaaact
gcattcgaggaagtctttcagaaaaccaacttcacaactcacatcttcagaaaccgagtc
aagctggagacgtataacgatgagagtcgagtgaaggtaaccgtcatggaagtcctgccc
gtcgaccacagggaatacagcaggcgactcctcagtaacatccgtaaattggccagctga
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