Pungitius pungitius (ninespine stickleback): 119215296
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Entry
119215296 CDS
T07626
Symbol
nup98
Name
(RefSeq) nuclear pore complex protein Nup98-Nup96 isoform X1
KO
K14297
nuclear pore complex protein Nup98-Nup96
Organism
ppug
Pungitius pungitius (ninespine stickleback)
Pathway
ppug03013
Nucleocytoplasmic transport
Brite
KEGG Orthology (KO) [BR:
ppug00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
119215296 (nup98)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ppug03019
]
119215296 (nup98)
03036 Chromosome and associated proteins [BR:
ppug03036
]
119215296 (nup98)
Messenger RNA biogenesis [BR:
ppug03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Nuclear pore complex
119215296 (nup98)
Chromosome and associated proteins [BR:
ppug03036
]
Eukaryotic type
Centrosome formation proteins
Spindle formation proteins
119215296 (nup98)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Nup96
Nucleoporin2
Nup98_GLEBS
Nucleoporin_FG
FlaX
Motif
Other DBs
NCBI-GeneID:
119215296
NCBI-ProteinID:
XP_037323235
LinkDB
All DBs
Position
16:complement(18516878..18532321)
Genome browser
AA seq
1857 aa
AA seq
DB search
MFNKSFGTPFGGGTGGFGTSSTFGQPNAGFGATGGFGTSAFGATANSGGLFGATQNKPAG
GLFGSSTFSQPAAPAANAGFGFGGATGTTTSLFGNTATGASSGLFSQPSNAFGAGKPTSF
GSFGTNTSTGGLFGATNTASNPFGGGAVASLFGASGFTAQQQQQQQQQQQQQQQQQQQQP
GTTVKFNPPTGSDTMVKAGVTTSINTKHQCITAMKEYENKSLEELRLEDYQAGRKGPTNP
MVAPTGGLFGATAATSTAATGLFGAAAPNTNFSFGQNKTTFGAAPAAAAGGFGTAAGGLF
GQPAAQQASSLFKPFGQTTTTPSTGFSFGNTNTMGQANTSTMGLFGNTAAPQAGGLFGAA
QPSAATGFGTTTGLFGSTNAGFGTVGAQQSLFGNKAAGFGTATTSAPSFGTGTGLFGNKP
TLTLGTGTNTSTFGFGANAAAGSLFGTKPAAGGLGTALGTSFGAAVGTGQTSLFGNNQGK
LGATLGTMGTFGATAFNSGANAMGFGAPQQPVALTDPSGTASQQALLQQQLSVLAYSPYG
DSPLFRNPLSDPKKKEERLKPTNPTAQKALTTPTHYKLTPRPATRVRPKALSSSGASKSQ
LFDGLDDDEPSLTNGAFVPRKSIKKLVLKNLNSSQYNSPQNSSPPSKETDDLASPPEYPQ
NGHSHMQDEGEEMPGPSSRTDDDPEVTQFYVNPIAKPLPQGRLQASLQDTISDLNMHKPA
RGAGLELSTDDVSASLGEESLQEDRDEEEEEEEQQLESQQSPHPAGIVLNRVGYYTLPPM
DDLADMVDENGDCVVENFTVGRKGYGSIFFPGEVNVAGLNLDEVVHFRRKEVIVYPDDKN
KPLEGEGLNRRAEVTLDGVWPNDKTACTQIRCPDRLTEMNYEGRLEKASRKQGARFLEYR
PETGSWVFEVAHFSKYGLQDSDEEEDVPLKVDPKKLKTMMSLPPARLNPPSQQQVAPQAQ
SPVAVEIPGGVAELDSDMADITQSFPTESMLGDEGGVDWTDRKLGGSIPAEHDGVSSSGH
MASSLGINPHTLQIMKASLFAEDDEEGDAPREPRSTKAEVASPRLVVPGAQSRPSVGGLL
QARFTSGFFSQLSDSPRPPPLPPLTRGSPAAKEPSHWAGLGPSPFLLPPRAPEPPVRTVG
VRRLGGPVALQESVTLGKGALLMDGALFAGRSFRVGWGPGWTLAHCGQRLSSPADGPPDR
RDLGKTDFSFLPKPARSKLLTESPYKVVLEQLLGLEPPLKTSEVEEEVEEESRAVLLRPL
EICLRNSTVDTSHDSTCPLVRPRLGVAALHEYAEWIRELSDRRGGADAPPLGQWAEVWTL
CEALWGRLGAADAPEPGTEAPGDYEQQLERRRSFSSWLSRGAARRVEAEAALAERGRHTD
AIFSYLTANRISEACRLAQREGDHRLSLLLSQAAGSQHCRDLLSLQLADWSRMQTDCYLP
EERLRIFTLLSGKPVWQSSDSVVNVCSELDWKRCLAVHLWFMLPPTASVADALARYEAAF
QGSCDGGKYACAPLPSYLEDVVEEEQEEEPKRPLHDLCFHLLKLYSDRHYSLQQLLDPLT
VTWQRLDYRLSWHLWGVLQALHYSHLSASRQGLLHASYAAQLESAGVWHMAVFILLHIPD
HIQREGAVRAMLTLHCCLQETPESLRRERFLTERLLIPDQWLHEAKATRARRDGDRHQEA
LHLYRAGSWTQCHRLLIQHLASDCIINDNHDYLLEFLEGLAVPEHSATIQDWDTAGRVYL
DYIRVINTLQDIQQVEAAGFELERLYGDVTSLCSRIELLPCSSARDRLAQSEMAKRVANI
LRVVLSLQQGDAPPDPLGGGLGQLALHIGRLPMPEDYTLEELRGLTQSYLRQHVLSQ
NT seq
5574 nt
NT seq
+upstream
nt +downstream
nt
atgttcaacaagtcattcggcactcccttcggcggagggacgggggggtttggcacctcg
tccacctttgggcaaccaaacgctggtttcggggcgaccggaggcttcgggacgtctgcg
ttcggggcgaccgccaacagcggaggcctgtttggagccacgcagaacaaacctgcaggt
ggtctgttcgggtccagcaccttcagccagccagcggcgcccgctgccaacgccggcttt
ggtttcggcggggcgaccggcaccacaaccagcttgtttggcaacaccgcgaccggcgcc
agcagcggcctcttctcccagcccagcaatgccttcggagccggcaaacccacgtcgttc
ggaagctttgggaccaacaccagcaccggcgggctgtttggggccacaaacaccgcctcc
aacccgttcggtggaggcgccgttgcctccctgtttggagcctccgggttcactgctcag
cagcaacaacaacaacaacaacaacaacaacaacaacagcagcagcagcaacaacagccg
ggaaccaccgtcaagttcaatcctccaacaggaagtgataccatggtgaaagccggcgtg
accaccagcatcaacacgaagcaccagtgcatcacggccatgaaggagtacgagaacaag
tccctggaggagttgagactggaggactaccaggcgggcaggaagggcccgaccaaccca
atggtggcgccgactggcggcctgttcggagccactgcagcgacgtccaccgccgccacc
gggctgtttggcgccgccgcccccaacacaaacttctccttcggccagaacaagacgacc
ttcggggcagcgcctgcagcggcggccggcgggttcggcacggcggccggcgggctgttc
ggccagccggccgcccagcaggccagcagcctcttcaagccctttggccagaccaccacc
acccccagcaccggcttctcctttggcaacaccaacaccatggggcaggccaacaccagc
accatgggtctgttcgggaacacggcggccccccaggcgggcggcctgttcggcgccgct
cagcccagcgccgccaccggctttggcacgaccaccggtctcttcgggtcgaccaacgcg
ggcttcggcaccgtgggggctcagcagagcttgttcgggaacaaggcggccgggttcggc
accgccaccaccagcgccccgtccttcggcaccggcaccgggctcttcggcaacaagccc
accctcacgctgggcaccggcaccaacacctccaccttcggtttcggcgccaacgccgcc
gccgggagtctgttcggcacgaagccggccgctggggggctggggacggcgctggggacc
agctttggagcagcagtgggcaccgggcagacgtccctctttgggaacaaccagggcaaa
ctgggagccacactgggaacgatgggaaccttcggcgccaccgccttcaacagcggagca
aacgcgatggggtttggagctccacagcagcccgtcgcactcaccgatccgagtggcacg
gcctcccagcaggcattgctgcagcagcagctcagcgtcttggcctactcgccgtacgga
gactcgccgttgttcaggaacccgctgtcggaccccaagaagaaggaggagcgtctaaaa
ccgaccaatccgacggcccagaaggctctgaccacgcccacccactacaagctgaccccc
cgcccggcgaccagggtccgccccaaagcgctgtcctcgtcgggggcgtccaagtcgcag
ctcttcgacgggctggacgacgacgagccgtcgctcaccaacggagcctttgtacccagg
aagagcatcaagaagctggtgctgaaaaacctcaacagcagccagtacaacagcccccag
aacagcagcccccccagcaaagagaccgacgacctggcttcacctccagagtacccgcag
aacggacacagtcacatgcaggacgagggggaggaaatgccgggtcccagcagccggaca
gacgacgaccccgaggtcacccagttttacgtcaaccccatcgccaagcccctcccacag
ggccgcctccaggccagcctgcaggacaccatcagcgacctcaacatgcacaaaccggcc
cgcggcgcaggcctggagctgagcaccgacgacgtatctgcgtctctgggggaggagtct
ctgcaggaggacagagacgaggaggaggaggaggaggagcaacagctggagtcccagcag
tctcctcacccagcaggcatcgtcctgaaccgcgtgggttactacaccctcccccccatg
gacgacctggccgacatggtggatgaaaacggagactgcgtggtggagaacttcactgtg
gggcggaaaggctacggctccatcttcttcccgggcgaggtcaacgtggcggggctgaac
ctcgacgaggttgtgcacttccgccgcaaagaggtcattgtgtacccggacgacaagaac
aagcctcttgagggggaggggcttaacaggcgagctgaggtgaccctggatggcgtctgg
ccgaacgacaagacggcgtgcactcagatccggtgccccgaccgcctgacggagatgaac
tacgagggccggctggagaaggcctcccgcaagcagggcgcccgcttcctggagtaccgc
cccgagaccgggtcctgggtgtttgaggtggcccatttctctaaatacggcctccaggac
tctgacgaggaggaggacgttccgctcaaagtcgaccccaagaagctgaagacgatgatg
tcacttcctcccgccaggctgaaccccccctcccagcagcaggtggcgccacaggctcag
tctcccgttgccgtggagatcccagggggcgtggccgagctggatagcgacatggccgac
atcacccagagcttcccaacagagagcatgctgggagacgaggggggggtggactggacg
gacaggaagctcggcggctcgattcccgcggagcacgacggcgtctcctcctccggccac
atggcgtcctcgctgggcatcaacccgcacacgctgcagatcatgaaggcgtcgctgttc
gccgaggacgacgaggagggcgacgccccccgggagccgaggtcgacgaaggccgaagtc
gcgtcccctcgactcgtcgtgccgggggctcagagtcgaccctccgtcgggggtctcctt
caggctcgcttcacctccggcttcttctctcagctgtcggactccccccgccccccccct
cttcctcctctgacgcgggggtcgcccgctgccaaagagccctcccactgggcggggctg
gggccctcgcccttcctgctgcccccccgagccccggagccccctgtgcggacggttggc
gtgcggcgcctcgggggcccagtcgccctccaggagtcggtcactttggggaagggggcg
ctgctgatggacggcgctctgtttgcgggccggtccttccgggtggggtggggccccggc
tggacgctggctcactgcggccagcggctgagctcgccggcagacgggccgccggaccgc
cgcgacctcggcaagacggacttcagcttcctgcccaaacccgccaggagcaaactactc
actgaaagcccctacaaggtggtgctggagcagctgctgggtctggagccgccgttgaag
accagcgaggtggaggaggaggtggaggaggagagccgggcggtgctgctgcgccccctg
gagatctgtctgaggaacagcaccgtcgacacctcccacgactccacctgcccgctggtg
cggccgcggctcggcgtggcggcgctgcacgagtacgccgagtggatccgagagctgagc
gaccgccgcgggggggcagacgcgccccccctgggtcagtgggccgaggtgtggacgctg
tgcgaggcgctgtggggccggctgggcgccgccgacgccccggagcccggcacggaggcg
cctggcgactatgagcagcagctggagaggaggcggagcttctcgtcctggctgtcgcgg
ggcgccgcccgccgggtcgaagcggaggcggcgctggctgagagaggtcggcacacggac
gccatcttcagctacctgacggcaaaccgcatcagcgaggcgtgccgcctggcgcagagg
gaaggcgaccaccggctgtccctgctgctctcccaggccgccggctcccagcactgtcgg
gacctgctgagcctgcagctcgccgactggagccgcatgcagacggactgctacctgccc
gaggagcggctccgcatcttcacgctgctctccggcaaacctgtgtggcagtcgtcggac
tcggtggtgaacgtttgctccgagctggactggaagcgctgcctcgccgtgcacctgtgg
ttcatgctgccgcccaccgcctctgtggccgacgccctcgccagatacgaggccgccttc
cagggctcatgtgacgggggaaagtacgcctgcgcgccgctgccttcgtacctggaggac
gtggtggaggaggagcaggaggaggagcctaaacggccgctgcacgacctctgcttccac
ctgctcaaactctacagcgacaggcactacagcctgcagcagctgttggaccctctgacc
gtcacctggcaacgcctggactaccggctcagctggcacctgtggggcgtcctgcaggcg
ctgcactacagccacctgagcgcctcgcggcagggactcctgcacgccagctacgccgcg
cagctggagagcgccggggtgtggcacatggccgtgttcatcctgctgcacatccccgac
cacattcagcgggagggggccgtgagggccatgctgaccctgcactgctgcctgcaggag
acgcccgagtcgctgcgcagggagcgcttcctgacggagaggctgctgatcccggatcag
tggctccacgaggcgaaggccacccgagcgcgccgcgacggcgaccgccaccaggaggcg
ctgcacctgtaccgggccgggtcctggacccagtgccaccggctgctcatccagcacctg
gcctcagattgcatcatcaacgacaatcacgactacctgctggagttcctggagggcctg
gcggtccctgaacacagcgccaccatccaggactgggacacggcggggcgggtttacctg
gactacatccgggtcatcaacacgctgcaggacatccagcaggtggaggccgctggcttt
gagttggagcgtctctacggcgacgtcacgtctctgtgcagcagaatcgagctgcttccc
tgcagctccgccagagaccgcctcgcccaatcagagatggcgaagcgtgtggccaacatc
ctgcgggtggtgctgagcctgcagcagggcgacgccccccccgacccgctgggggggggt
ctgggccagctggcgctgcacatcgggcggctcccgatgccggaggactacacgctggag
gagctgcgcggcctcactcagtcctacctgcgccagcatgtcctcagccaatga
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