Pungitius pungitius (ninespine stickleback): 119215298
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Entry
119215298 CDS
T07626
Symbol
ddx46
Name
(RefSeq) probable ATP-dependent RNA helicase DDX46 isoform X2
KO
K12811
ATP-dependent RNA helicase DDX46/PRP5 [EC:
5.6.2.7
]
Organism
ppug
Pungitius pungitius (ninespine stickleback)
Pathway
ppug03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
ppug00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
119215298 (ddx46)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
ppug03041
]
119215298 (ddx46)
Enzymes [BR:
ppug01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
119215298 (ddx46)
Spliceosome [BR:
ppug03041
]
Complex A
U2 snRNP components
U2 related factors
119215298 (ddx46)
Complex B
119215298 (ddx46)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
KH_12
KH-I_KHDC4-BBP
CdAMP_rec
Motif
Other DBs
NCBI-GeneID:
119215298
NCBI-ProteinID:
XP_037323243
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All DBs
Position
16:complement(18281252..18288398)
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AA seq
1069 aa
AA seq
DB search
MGRESRHYRKRSTSRGRSGSRSKSRSPDKRSKKDDRDRNRRERSRSRDRRRSRSRDRKRV
RRSRSRERRRSRSRDRRRSGSRTRTRRSRSASPSKSRRPDEKSRSKEKDNVEPLSEKKKI
KEEKEDEKVEDQDFDQNKLEEEMRKRKERVEKWREEQRKKAIENIGEIKRELEEMKQGKK
WSLEDDEDDDEDNSAPMEGDDEEDGEGKVESEEKEIKEEKKAEEEEEEEVEAEKESEAPM
ELEAEEDDVDPLDAYMEEVKQEVKKFNMGAMKGNDKKGAMTVTKVMTVLKTRKGPNTHKK
KGELMENDQDAMEYSSEEEEVDLQTALTGFQTKQRKVLEPVDHGKIQYEPYRRNFYVEVP
ELARMTPEDVNAYRLELEGINVKGKGCPKPIKTWVQCGVSMKILSAMRRHGYEKPTPIQA
QAIPAIMSGRDLIGIAKTGSGKTIAFLLPMFRHIMDQRPLEESEGPIAVIMTPTRELALQ
ITKECKKFSKQLSLRVVCVYGGTGISEQIAELKRGAEIIVCTPGRMIDMLGANSGRVTNL
RRATYVVLDEADRMFDMGFEPQVMRIVDNVRPDRQTVMFSATFPRAMEALARRILAKPLE
VQVGGRSVVCSDVEQHVLVIEEDKKFLKLLEILGHYQEKGSVIIFVDKQEHADTLLKDLM
KASYPCMSLHGGIDQYDRDSIINDFKNGACRLMVATSVAARGLDVKQLILVVNYNCPNHY
EDYVHRAGRTGRAGNKGFAYTFITDDQVRYAGDIIKALELSGSPVPQELEQLWASFKDQQ
KLEGKSIKSSSGFSGKGFKFDETEHALANERKKLQKAALGLQDSDDEDGALDIEEQIESM
FNSKKRVKDLSAPGSASGSSGSASSSAGVQGGLPGLGPPSAGNIQKLEMAKRLALKINAQ
KNLGAEAQDVMQQATNAILRGGTIMTPSVSAKTIAEQLAEKINAKLNYTPVEKLEEERQA
AEQAETVKRYEEELEINDFPQTARWKVTSKEALQRIGEYSEAAITIRGTYFPPGKEPKEG
ERKIYLAIESANELAVQKAKTEITRLIKEELIRLQNSYQPTSKSRYKVL
NT seq
3210 nt
NT seq
+upstream
nt +downstream
nt
atgggacgcgagtccagacactaccggaagcggtccacgtcccggggacggtcgggaagc
cgctccaagagtcgctccccggacaaacgctccaagaaggacgaccgagaccggaaccgg
agagagcggtcccggagccgggaccgccgcaggtcccggtccagggacaggaaacgagtc
cggcgctccaggagcagagagcgcaggaggtccagaagccgagacaggaggaggtcgggc
agcaggacccgaactcgcaggtcccggtccgccagccccagcaagagcaggaggccagac
gaaaaatcaaggagcaaggagaaggacaacgtggagcctttatccgaaaagaaaaagatc
aaagaggagaaggaggatgagaaggtggaggaccaagactttgaccagaacaagctggag
gaggagatgaggaagaggaaggagcgggtggagaagtggcgggaggagcagaggaagaag
gccatcgagaacattggggagatcaagagggagctggaggagatgaagcagggcaagaag
tggagcctggaggatgatgaggacgacgatgaggacaactctgctccgatggaaggagac
gacgaggaagacggggagggcaaggtggagagcgaagagaaggagataaaggaggagaag
aaggcggaggaagaggaggaggaggaggtggaagcggagaaggagagcgaggccccgatg
gagctggaggcagaggaggacgacgtcgaccctctagacgcctacatggaggaggtgaag
caggaggtgaagaagttcaacatgggagccatgaagggaaacgacaagaaaggagcgatg
acggtaaccaaggtgatgacggtccttaaaaccagaaaaggacccaacactcacaagaag
aagggggagctgatggagaacgaccaggacgccatggagtactcgtcagaggaggaggag
gtggacctgcagacggctctgacgggctttcagaccaagcagaggaaggtcctggagccc
gtggaccacggcaagatccagtacgagccgtaccgcaggaacttctacgtggaggtgccc
gagctggccaggatgacgccagaagacgtgaacgcgtaccgcctggagctggagggcatc
aacgtcaaagggaagggatgtcccaaacccatcaagacctgggtccagtgcggcgtgtcc
atgaagatcctcagcgccatgaggcggcacggctacgaaaagcccacccccatccaggcc
caggccatccccgccatcatgtcgggtcgagacctcatcggcatcgccaagaccggcagc
gggaagaccatcgccttcctgctgcccatgttcagacacatcatggaccagaggcccctg
gaggagtccgagggacccatcgcggtgatcatgactcccacccgagagctggctctgcag
atcaccaaggagtgtaagaagttctccaagcagctgtccctcagggtggtgtgtgtgtac
ggaggcacaggcatcagcgagcagattgcggagctgaagcgaggagcggagatcatcgtg
tgcaccccggggagaatgattgacatgttgggggccaacagcggtcgagtcaccaacctg
cggcgggccacctacgtggtgctggacgaggccgacaggatgttcgacatgggcttcgag
ccgcaggtgatgcgcatcgtggacaacgtgcgcccggaccggcagaccgtcatgttctcg
gccaccttcccccgggccatggaggcgctggcccggaggatcctggccaagcccctggag
gtgcaggtggggggccgcagtgtggtctgctccgacgtggagcagcacgtgctggtgatc
gaagaggacaagaagttcctgaagctgctggagatcctgggccactaccaggagaagggc
tcggtcatcatcttcgtggacaaacaggagcacgcggacacgctgctgaaggacctgatg
aaggcctcgtacccctgcatgtcgctgcacggaggaatcgaccagtacgacagagacagc
atcatcaacgacttcaagaacggggcgtgccgcctcatggtggccacctcggtggcggcc
cgagggctggacgtcaagcagctcatcctggtggtcaactacaactgccccaaccactac
gaggactacgtccaccgggccggccgcacgggccgggccggcaacaagggcttcgcctac
accttcatcacggacgaccaggtccgctacgccggtgacatcatcaaggcgctggagctg
tccggctcccccgtcccgcaggagctggagcagctgtgggcctccttcaaggaccagcag
aaactggagggaaagtccatcaagagcagcagcggcttctcgggaaaaggcttcaagttc
gacgagacggagcacgcgctggccaacgagaggaagaagctgcagaaggcggcgctcggc
ctgcaggactcggacgacgaggacggcgccctggacattgaggagcaaatcgagagcatg
ttcaactccaagaagagggtgaaggatctgtcggctcccggctcggcctccggttcctcg
ggctcggcgtcctcctcggccggcgtccagggggggctgccgggcctcgggcccccgtcc
gccggaaacatccagaaactggagatggccaagaggctggcgctgaagatcaacgctcag
aagaacctgggcgccgaggctcaggacgtgatgcagcaggccaccaacgccatcctgcgg
gggggcaccatcatgacgccctcggtgtcggcgaagaccatcgcggagcagctggcggag
aagatcaacgccaagctgaactacacccccgtggagaagctggaggaggagcggcaggcg
gctgaacaggccgagacggtgaagagatacgaggaggagctggagatcaacgacttccct
cagacggccaggtggaaggtgacgtccaaagaagctctgcagaggatcggtgagtactct
gaagccgccatcaccatccgaggaacctacttccctccaggcaaggagcccaaggaggga
gaacggaagatctacctggccattgaaagtgccaacgagctggctgtgcagaaagccaaa
acggagatcacgcgtttaatcaaggaggagctcatcagattacaaaattcctaccagccg
acgagcaaaagtcggtacaaggttctgtag
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