Pungitius pungitius (ninespine stickleback): 119215554
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Entry
119215554 CDS
T07626
Symbol
zc3h12b
Name
(RefSeq) probable ribonuclease ZC3H12B
KO
K18668
ribonuclease ZC3H12 [EC:3.1.-.-]
Organism
ppug
Pungitius pungitius (ninespine stickleback)
Brite
KEGG Orthology (KO) [BR:
ppug00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ppug03019
]
119215554 (zc3h12b)
Messenger RNA biogenesis [BR:
ppug03019
]
Eukaryotic type
mRNA degradation factors
Other degradation factors
RNases
119215554 (zc3h12b)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_Zc3h12a
UBA_6
Regnase_1_C
zf-CCCH_2
zf-CCCH_4
UBA_N4BP1_C
Motif
Other DBs
NCBI-GeneID:
119215554
NCBI-ProteinID:
XP_037323694
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All DBs
Position
16:complement(8063104..8072265)
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AA seq
854 aa
AA seq
DB search
MTVWLMVEKLKMEKRPCREENIDSSEARHASDNSEEASSSESEPEEQQQQQQQQRVRLSS
RCKKREPLAVAKPHRQLCRSPCLDRPSFSQGSTAQDLRDDDGAGCAAATRLASDREYQTK
MDFALKLGYSGEQVQTVLNKLGAAALINDILAELVRLGNKVEPEVQPCSGAAASMSRPAC
VKEAVSPEVSVEDESPDTFDNLRPIVIDGSNVAMSHGNKEVFSCRGIQLAVEWFFDKGHK
DITVFVPAWRKEQSRPDALITDQEVLRKLEKEKILVFTPSRRVQGRRVVCYDDRFIVKLS
FDSDGIIVSNDNYRDLQNEKPEWKKFIEERLLMYSFVNDKFMPPDDPLGRHGPSLENFLR
KRPVVPEHKKQPCPYGKKCTYGHKCKYYHPERVNQPLRSVADELRAFAKLSAVKTMSEGA
LMKCGAGPAVAAKADGTSEVRRVAPKRQSDPSIRAVACEPPAALSVARKSEANSVPSLVS
ALSVPTMQPAKSHAAGALNTRSASSPVPGSLQFGHSSLEHMSSVQYPPILVTNSHGASIT
YGEQFPKYDSVSDHGYYSLHSDFSNMSMSSMHNVDSFCSMEHEHGVYQRNPSHCLESCLS
HSNSDSFSSYGDMYPSSMDSSLEESMKGQQQQQQSPAQGRMQAFSHGFRHEALTRVQSYG
PEEPKQGHRKQPGSRLAPHIQHVAVGARSSCPGDYPLTQNVLPPLSSQPTRSLGMTRMDS
ISDSRLYDSNPMRQRRPPLCREQHASWDPLPCGNESYGYHSYPLSNNLMPCCERVMVRSM
PDKMEQIWNSPWEMPSAAEHQERYVIPDHQYQTYRNLCNIFPAYVVHSVMEKNPHLTDPQ
QLAAIIVTKLRSCH
NT seq
2565 nt
NT seq
+upstream
nt +downstream
nt
atgacagtatggttgatggtggagaagctcaaaatggaaaaacgcccgtgcagggaggag
aacattgactcaagcgaggcccggcatgccagtgacaactccgaggaagcaagcagctcc
gaaagcgaaccagaagagcagcagcagcagcagcagcagcagagggttcggctgagcagc
aggtgtaagaagagggagcccctggccgtcgccaagccccaccgacagctgtgccgctcg
ccgtgcctcgaccggcccagcttttcgcagggcagcaccgctcaggacctccgcgatgac
gacggcgccggctgcgcggcagccaccaggctggccagcgaccgcgagtaccagaccaag
atggactttgcgttgaagctgggctattcgggggagcaggtgcagacggtgctcaacaag
ctgggcgccgctgcgctcatcaacgacatcctcgccgagctggtgaggctcgggaacaaa
gtggagccggaggtccagccctgcagcggcgccgcggcgtccatgtcgcggcccgcttgt
gtgaaagaggccgtcagccccgaggtgtcggtggaggatgagtccccggatacgtttgat
aacctccggcccatcgtcatcgacggctcgaacgtggcaatgagccatggaaacaaagag
gtgttctcgtgtcgtggtatccagctcgctgtggaatggttctttgacaaaggacacaag
gacatcactgtgtttgtcccagcctggagaaaggagcagtcgaggcccgacgccctcatc
acagatcaggaggtattacgcaagctagaaaaagagaagatcctggttttcaccccatct
cggcgagttcaaggccggagagtggtgtgctacgacgatcgcttcatagtgaagctgtct
tttgattctgatggaattattgtgtcaaatgacaactacagggacttgcaaaatgagaaa
ccggagtggaagaagttcatagaagagcgcctcctaatgtactcgtttgtcaatgacaag
tttatgccgcccgatgatcccttgggaagacacggcccgagcttagaaaacttcctccgc
aagcgtcctgtggttccagagcacaaaaaacaaccttgcccctatgggaaaaagtgcacg
tacggacacaagtgcaagtactaccacccagagcgcgtcaaccagccgctgcggtcggtg
gccgacgagctgcgggctttcgccaaattgtcagcggtgaagacgatgagcgagggggcc
ctgatgaaatgcggcgccggcccggcggtggcggccaaggccgacggcacctccgaggtg
aggcgcgtggcgcccaagcgtcaatcggaccccagcatccgcgcggtggcctgcgagcct
cccgcggcgctgtccgtcgccaggaagtccgaggccaattcagtgccttcccttgtgtct
gcgctcagcgtgcccaccatgcagcccgccaagagtcacgcggctggcgccctgaacacg
cggtcggccagcagcccggtgcccggctctctgcagttcggccacagctcccttgagcac
atgtccagtgtacagtaccccccgattttagtgaccaacagtcacggcgcctccatcaca
tacggggaacagttcccaaagtacgactcggtgagcgaccacggatactactcgctgcac
agtgatttctccaacatgagcatgagcagcatgcacaatgtggacagtttctgtagcatg
gagcacgagcacggcgtgtatcagaggaatcccagccactgccttgagtcctgcctcagc
cattcaaacagcgactccttctcctcatacggggacatgtacccgagctccatggatagc
agcttggaggagagcatgaagggccagcagcagcagcagcagtctcccgcgcagggcagg
atgcaggctttctcccacggcttccgtcacgaagcgctgactagggtgcagagctacggg
cccgaggaacccaagcagggccaccgcaagcagcccggatcccgcctggccccgcacatc
cagcacgtcgcggtgggggcccggtccagctgtcccggggactatcccctcactcagaac
gtcctcccacctttgtcctcgcagcccacgcgctccctcggcatgactcgcatggacagc
atctcggattcgcggctgtacgacagcaacccgatgaggcagaggcgacctccgctgtgc
cgcgagcagcacgcaagctgggaccctctgccttgcggcaacgagtcctatggctatcac
tcgtatccgctgagcaacaacctgatgccgtgctgcgagcgagtgatggtccgcagcatg
ccggacaaaatggaacaaatctggaactcgccgtgggagatgccgtccgcagccgagcac
caagagcggtacgtcatcccagaccaccagtatcaaacatatcggaacctttgtaacatc
ttccctgcttacgtagtccactcggtaatggagaagaaccctcatttgacagatccgcaa
caactcgccgccatcattgttacaaaactgaggtcatgccattga
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