Pungitius pungitius (ninespine stickleback): 119215653
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Entry
119215653 CDS
T07626
Symbol
lig3
Name
(RefSeq) DNA ligase 3
KO
K10776
DNA ligase 3 [EC:
6.5.1.1
]
Organism
ppug
Pungitius pungitius (ninespine stickleback)
Pathway
ppug03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
ppug00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
119215653 (lig3)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ppug03400
]
119215653 (lig3)
Enzymes [BR:
ppug01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
119215653 (lig3)
DNA repair and recombination proteins [BR:
ppug03400
]
Eukaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
Short Patch-BER factors
119215653 (lig3)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_N
LIG3_BRCT
zf-PARP
DNA_ligase_A_C
RNA_ligase
BRCT_2
mRNA_cap_enzyme
Motif
Other DBs
NCBI-GeneID:
119215653
NCBI-ProteinID:
XP_037323873
LinkDB
All DBs
Position
16:complement(17326928..17336212)
Genome browser
AA seq
994 aa
AA seq
DB search
MQRALIASAHTTICVGLKQLRTACGSLSVAPRFQPLPPLVTRRRLRRFSSELLQDRRPRL
PPHRRFSARPDMAEQRFIVEYAKRGTAGCKKCKDKIPKEVVRIGKIVPNPFSESAGEMKE
WYHVKCIFEKLERARATTKKIEDITDLEGWEELQDQDKEVINKHVSDLMAKVNASPKKKA
SAKANASGQLMAPPADPSANAPRKFSGFTAAKASGAGAAPGPSPPPTSANDSRGSPLSAK
LCDPRHKDCLFREFRKLCATVAENNSYNVKTQIIEKFLRKGTGGDKFHGDLFLTVKLLLP
GVVKSVYNLNDKQIVKLFSRIFRCNQEDMVRDLEQGDVSETVRMFFDESKSFPAATKSLL
TIQEVDASLTRLAQLTKEDEQQTELEEISKKCTSNDLKCIIRLIKHDLKMNSGAKHVLDA
VDPNAYDAFKASRNLGDVIERVLRNQQEASDGSGPRKLLAVEASLMTPVQPMLAEACKSV
EYAMKKCPNGMYSEIKYDGERVQVHKNGDHFSYFSRSLKPVLPHKVAHFKDYIPQAFPGG
HSMILDAEVLLIDTNTSKPLPFGTLGVHKKAAFQDANVCLFVFDCIYFNGVSLMERPLCE
RRKFLDDNMVEVTNRILFSEMKHVTRAGDLAEMITRVIREGLEGLVLKDLKGSYEPGKRH
WLKVKKDYLNEGAMADTADLVVLGAFYGKGSNGGIMSSFLMGCYDPHSRKWCTVTKCSGG
YDDATLARLQKELDVIKISKEPSKIPGWLKVIKNYYPDFIIRDPQRAPVWEITGAEFSKS
EMHTADGISIRFPRMTRIRDDKDWKTATNLDQLKELFRISKENCDFNVTAGPSTIKEEKS
SSGGDSGGSSPAPPPPRGPPPKKTTSTPKTKAIKSEPRTPGSGPPSAKKGKKTESVQSNG
QTKTKPTAALLEPRSDKTLLDIFSGVKLLLPEAVQDFHKLRRYFVAYDGDVVQDFEVATA
THTLAEPEEDSQAERVSPGWIWECIRKRRIVPPC
NT seq
2985 nt
NT seq
+upstream
nt +downstream
nt
atgcagagagccctgattgcatcagcgcacacgactatctgcgtcggcctaaagcagctt
cggacggcgtgcggatccctttcggtcgccccgcgctttcagcctctgccgccgctcgtc
actcgccggcgactccgtcgcttctcctccgagctcctccaggaccggcgtccccggctt
cccccgcatcggcgcttctccgcccggccggacatggcagagcagaggttcatcgtggag
tacgccaagcgcggcacggcgggctgcaagaagtgcaaggacaaaatccccaaggaggtg
gtgcgcatcgggaagatcgtgccgaaccccttcagcgagtccgcgggggagatgaaggag
tggtaccacgtcaagtgtatattcgagaagctggaaagggcgagagccaccaccaagaag
atcgaggacatcacggacctggagggctgggaggagctgcaggaccaagacaaggaggtc
atcaataaacacgtttcagacctgatggccaaagtcaacgccagcccaaagaagaaagcc
tcggccaaggcgaacgcctccggtcagctgatggcgcctcccgccgacccgtccgccaac
gcgccgcggaagttctccggcttcacggctgccaaagcgagcggcgccggcgccgccccc
ggaccgtcccctccccccacctcggccaacgacagccggggcagccccctgtccgccaag
ctctgcgacccgcggcacaaggactgcctcttcagagagttccgcaagctctgcgccacg
gtggccgagaacaacagctacaacgtgaagacgcagatcatcgagaagttcctcaggaag
ggcaccggcggagacaagttccacggagatcttttcctcacagtgaagctgctcctgccg
ggcgtcgtgaagagcgtctacaacctcaacgacaagcagatcgtgaagctcttcagccgc
atcttcaggtgcaaccaggaggacatggtgcgcgacctggagcagggcgacgtgtctgaa
accgtgaggatgttcttcgatgagagcaaatcgttccccgcggcgaccaagagcctcctg
accatccaggaagtggacgcctcgctgacccgcctcgcccagctgaccaaggaggacgag
cagcagaccgagctggaggaaatcagcaagaaatgcaccagtaatgacctcaaatgcatc
attcggcttattaaacacgacttgaagatgaactctggagccaaacacgtcttggacgcc
gtggatccaaacgcctacgacgccttcaaggcctcgcgtaacctaggcgacgtgattgag
cgggtgctgaggaaccagcaggaagcgtccgacggctcgggacccaggaagctcctcgcc
gtggaggcctcgctcatgacccccgttcagcccatgctggcggaggcgtgtaagtcggtg
gagtacgccatgaagaaatgccccaacgggatgtactcggagatcaagtacgacggggag
cgcgtgcaggtccacaagaacggagaccacttcagctacttcagccgcagcctcaagccc
gtgttaccgcacaaagtggcccatttcaaggactacatcccccaggcgttccccgggggc
cacagcatgatattggatgctgaagttcttctgattgacacaaacaccagtaaacccctg
cccttcgggacgctgggtgtccacaagaaagccgcctttcaggacgccaacgtgtgcctc
tttgtgttcgactgcatctacttcaacggcgtgagtctcatggagaggcctctgtgcgaa
cgcaggaagttccttgatgacaacatggtggaggtgaccaacaggatcctgttctcagag
atgaaacacgtcactagggccggagatctggctgagatgataacccgagtcatcagggag
ggacttgaaggcctggtgctgaaagacttgaagggctcctatgaaccggggaagcggcac
tggctgaaggtgaagaaggactacttgaacgaaggcgccatggccgacacggccgacctg
gtggtgctgggggccttctacgggaaaggctcaaacgggggcatcatgtccagcttcctg
atgggctgttacgacccacactccaggaaatggtgcacggtcaccaagtgctccggcggc
tacgacgacgccaccttggcccggctccagaaggagctcgatgtgatcaaaatcagcaag
gagccgagcaaaatcccaggctggctgaaagtcatcaagaactattatccggatttcatt
attcgtgatcctcagcgagcgcccgtctgggagatcacgggcgccgagttctccaaatcg
gaaatgcacaccgccgacggcatctccatccgcttcccccgaatgacgcgtatccgtgac
gacaaggactggaagacggccaccaacctggaccagctcaaagagctcttccgcatatcg
aaggagaactgtgactttaacgtgacagccggaccatccacgatcaaggaggaaaagagc
tcctctggaggggacagcggcggaagctccccggcccccccacccccccgtggacctcca
cccaagaagaccaccagcacccccaaaaccaaggcgataaaatccgagcctcgcacccct
ggctcagggccaccgagcgccaaaaaggggaagaagactgaaagcgtccaaagtaacgga
caaaccaaaacgaagcccacggccgcgctgctcgagccgaggagcgacaagacgctgctg
gacatcttcagcggcgtgaagctcctcctgcccgaggctgtgcaggacttccacaagctg
cggcgctactttgtggcgtacgacggcgacgtggtgcaggacttcgaggtcgccacggca
acgcacacgctggccgaacccgaggaggacagccaggcggagagagtgtcaccgggctgg
atctgggaatgtatccgcaagaggcggattgtgcccccctgctaa
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