Pungitius pungitius (ninespine stickleback): 119215674
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Entry
119215674 CDS
T07626
Name
(RefSeq) roundabout homolog 1-like isoform X1
KO
K06753
roundabout, axon guidance receptor 1
Organism
ppug
Pungitius pungitius (ninespine stickleback)
Pathway
ppug04517
IgSF CAM signaling
Brite
KEGG Orthology (KO) [BR:
ppug00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04517 IgSF CAM signaling
119215674
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
ppug04515
]
119215674
Cell adhesion molecules [BR:
ppug04515
]
Immunoglobulin superfamily
ROBO family
119215674
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
I-set
Ig_3
ig
Ig_2
fn3
V-set
C2-set_2
FN3_DSCAM-DSCAML_C
Ig_5
Pur_ac_phosph_N
Unc5_NetrinR_N
Ig_PDGFR_d4
Fn3_Dep-1_3rd
Ig_J_second
Motif
Other DBs
NCBI-GeneID:
119215674
NCBI-ProteinID:
XP_062414112
LinkDB
All DBs
Position
16:7296475..7374497
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AA seq
1590 aa
AA seq
DB search
MQAVQTLIPSLLISLLCVSQLQWGRALDISSDTEKHRGSREVISQPPASEAASEDNSLEY
KGSRLRQEDFAPRIVEHPSDLIVSKGEPATLNCKAEGRPTPTVEWYKDGERVETDRDNPR
SHRMLLPSGSLFFLRIIHGRRSKPDDGSYVCVARNYLGQAISHNASLEVAILRDDFRQNP
VDVMVAVGEPAVLECQPPRGHPEPTISWRKDGANLDDRDERITIRSGKLMITNTLKSDAG
KYICVGTNMVGERESEIAELTVLERPTFVKRPSSVVVLAEESVEFHCVVQGDPVPTIRWR
KDDSDLPKGRFETLEDHTLIVRQVTSFDEGSYTCVVENMVGKSESSATLTVHVPPAFAIR
PRNQVVAVGRTVTFQCEATGNPQPAIFWQREGSESLLFSYQPPQPFSRLSVSQMGSLTIT
DVQRSDGGFYSCQALNIAGSVITKALLEVTDSGSDHPPPVIRQGPLNQTVSVDSTVVLGC
QTADSPPPTVHWKKDGAAVSPLDSRLSVADTGSLEIRYAKLGDTGLYTCVASSPHGEASW
TAYLQVEEFGVVVQSGQPMDPYLIPGAPSKPEVTDVSRTSVTLSWKLKLDGGATPTSFLI
EAFSHTLGSRWVTVAEHVKTQTFVLRNLKPAAVYLFMVRAVNAYGLSDPSPISDSVRTQD
STSTMQGVDHRHIQRELGDVVIHLHTPTVVSSSAVRVQWMVEQQSPYIQGYKVLYRASAE
HGQPEGQWSVLDVHAPREDGLLISQLTRGSIYEFKVRPFFDEFQGADSEVKVVKTLEEAP
SRAPQGVTVTKSDANGTAILVAWKPPPEWEKAGVIQEYKIWCLGNESRYHVNQSVDGSTF
SALISSLTPGVRYSIEVAASNGAGPGVKSDVTFFQLDSTGQMMDISEEKDTLSQISDVVR
QPAFIAGIGATCWLVLMIFSVWLYRHRKKRSGLSSTYTGIRKVPSFTFTPTVAYQRGESA
CSAGRPGLIGMGEPLNQLWLPDNWPNACANHKDCSINCCNNGNGTSDSNMTTYSRPADCI
ANYGNHPDNKQGGQLSSETAIYSDVNLSNKLNEIKTFNNSDFCYASPGGDSAATYEPIPY
ATTQLIQASIKNKTGPGGAEKMEMPCWKQPPNPPPIPKEMAAQMQYNVFEQNMLNKDHFQ
GGEGMIHPKTIPYNPTRDHSTGGSHHSSDRGSNSTSGSQNQKKGTRAPKIPKHNAATWGE
ALSPPHANAWDCDEYSLPMERSFDPGERMEGCPTPPVRAAPSCPTEVSYSHPLNNTSQGD
LSNGTDHLSEHIASHLRPLSPTHTYSSIPFCMDTDVQEEEEEEEAEEETGAELAESHYSQ
HPNAQKHKHQLHHPSPHKLLLHGLEQTPASSTGDLDRSVTGSMVNSWGSASEDNISSGRS
SVVSTSEGSFFTDGDFNQAAASSRDIVGLRMCRYPEESGRRLQRPSSPMSTDSNMSPAIT
HKRPRRHKQNQSGEQGYQPKDVFNDDSCMPMNFSSQMSHCDYNVRGATLPRVGSGEARGR
RGSTGTHRAREAASEQRESHDKHKTPGGGGRGSSKSRQHSEIGDVLLYSRPSFPSGQAQR
EPDDTNSSSFMSCGDSRTKQGGQKEEFLKS
NT seq
4773 nt
NT seq
+upstream
nt +downstream
nt
atgcaggctgttcaaacactcatcccatcccttctcatcagccttctctgtgtcagccag
ctgcagtggggccgtgccttggacatttcatcagatacagagaaacacagagggagccga
gaggtcatctctcaaccacctgcatctgaagctgcatctgaagacaacagccttgagtac
aaaggctctcgtcttcgccaggaagacttcgctccccgcattgtggaacacccctctgac
ctcattgtgtctaaaggggaaccagccactctcaactgtaaggccgagggccgcccgacc
ccgacggtggaatggtacaaagacggggagcgcgtcgagacggaccgcgacaacccccgc
tcccaccgcatgctgctgcccagcggctccctcttcttcctgcgcatcatccacgggcgc
cggagcaagcccgacgacggcagctacgtgtgtgtggcccgaaactatctggggcaggcg
atcagtcacaatgcatcccttgaagtagccattttgcgcgacgacttcagacagaacccg
gtggacgtgatggtcgccgtgggggagcctgcagtgttagagtgccaaccacctcgtggg
caccctgaacccaccatctcctggaggaaagatggagccaacttagacgacagagatgaa
cgcatcacaatccgcagtggtaagctgatgatcaccaacaccctgaagagcgatgcaggg
aaatacatctgcgttggaaccaacatggtgggggagagggagagcgagatcgctgaactc
actgtgctagagcgcccaacctttgtgaagaggcccagcagtgtggtggtgctggcagag
gagagcgtcgagttccactgcgtggttcaaggagaccctgttcccactatccgctggagg
aaagatgactctgacctgcctaagggccgatttgaaaccctagaggaccatacattaatt
gtccgccaagtgacctctttcgatgagggctcctacacatgtgtggtggagaacatggtt
ggaaagtctgaatcatccgccacgctcactgtacatgtgcccccggcatttgccatacgc
cccaggaaccaggtggtggcagtgggcaggacggtcaccttccagtgcgaggccactggc
aacccacagcccgcgatcttctggcagagggagggcagtgagagtctcctgttctcatac
cagccaccacagcccttcagccgcctgtccgtctcccagatgggcagtctgactattacc
gatgtgcagcgctctgatggcggcttctacagctgccaggcgctcaacatcgctggcagt
gttattaccaaagcactgctggaggtcacagactctgggtcagaccacccgcctcctgtg
attaggcagggccctctcaatcagaccgtctccgtggacagcacggtggtcctgggttgc
caaacagcggactctccacctcctacggtccactggaagaaggacggtgctgctgtgtct
ccactggactcccgcttgtccgtggctgacacaggatcactggagatccgctacgctaag
ctgggcgatacaggcctctacacttgtgtggcttccagtccacatggagaggcttcctgg
acagcttacttgcaggtggaggagttcggagttgttgttcagtccgggcagccgatggac
ccgtacctgattcccggtgcgccatccaaacctgaggtgacagacgtcagccgcacctct
gtcactctgtcgtggaaattgaaactcgatggtggcgcaacaccgacatctttcctgatc
gaggccttcagtcacacgttagggagcagatgggtgactgtcgccgagcatgtaaagaca
cagacctttgtactgaggaacctgaagcctgcggctgtctacctcttcatggtcagagcg
gtgaacgcctacggcctcagcgaccccagtccaatctctgactctgtcagaacacaagac
agcacatccaccatgcagggagtggatcaccgacacatccagagggagcttggcgatgtg
gttatccacctgcacacaccgacagtggtgtcatcttctgctgttagggtgcagtggatg
gtcgaacagcagtcgccatacattcagggttacaaggtgctttacagggcctccgctgag
catggccagccagagggccagtggagtgtcctggatgtacatgccccacgggaggacggg
ttgctgatcagtcagctcaccagggggtccatctacgagttcaaagtgcgccctttcttt
gatgagttccagggagctgacagtgaggtgaaggtcgtcaagacattagaagaagcccct
agcagagcacctcagggcgttacagtcacaaaaagtgatgccaatgggaccgcgatcctc
gttgcttggaaaccacctccagaatgggagaaagctggagtcattcaggagtacaaaatc
tggtgcctaggtaatgagagtcgatatcatgtaaaccagtcggtcgatggctccaccttt
tccgcgctcatctccagtctgacaccaggagtccgttacagcattgaggttgcagccagc
aatggtgctggacctggggtcaagagtgatgtcactttttttcaattagactctacggga
cagatgatggatatcagtgaggaaaaagacacgttgtctcagatttcagatgtggtgagg
caaccggcatttattgcaggcattggcgccacctgctggttggtcctcatgattttcagt
gtgtggctctaccggcatcgcaagaagagaagcggcctcagcagcacgtacaccggcatc
cgcaaagtgccatcattcaccttcacacccacagtggcgtatcaaagaggagaatctgcg
tgcagtgctggaagacctggccttatcggcatgggtgaacctctaaaccagctgtggctg
ccagacaattggccgaatgcatgtgccaatcacaaggactgtagcatcaattgctgcaat
aatggcaatggcaccagtgacagcaacatgacaacatacagccgaccagctgactgcata
gcaaactatggaaatcatccagacaacaaacaggggggacagcttagttctgagacggcc
atttacagcgacgtgaacctctccaacaagcttaatgagattaaaacattcaacaactcc
gacttttgctacgcaagtccagggggagattcagcagctacatatgaacccatcccgtac
gccaccacgcagctaatccaggccagcattaagaacaagacaggccccggtggtgcagag
aaaatggagatgccctgctggaaacagccccctaacccgcctccaataccaaaggagatg
gcggcacagatgcaatacaatgtatttgagcaaaatatgctaaataaagatcattttcaa
ggaggtgaaggaatgatccatcctaaaactattccctacaacccgacccgtgaccacagc
acaggaggctcacaccacagctccgacagaggcagcaacagcacttcagggagtcaaaat
caaaagaaaggaacgcgggccccaaagatcccgaaacataatgcagcaacgtggggagaa
gctctgtctcctcctcatgctaatgcctgggactgtgatgagtacagcctaccgatggaa
aggagttttgatccaggggagagaatggaggggtgccccaccccaccagtaagagcagca
ccctcatgtcctactgaagtgtcctacagtcacccactgaacaacacatcacagggagac
ctgagcaacggaactgatcacctcagcgaacacatcgccagccaccttcgccctctttcc
ccaacacacacctacagctccatacccttctgcatggacaccgatgtacaggaagaggaa
gaggaagaggaggcagaggaggaaacaggtgcagagcttgctgagagtcactacagccaa
caccccaacgcgcagaagcacaaacaccagctgcaccacccctctccacacaagctgctc
cttcatgggctggagcagaccccagcctccagcaccggcgatctggacagatcggtcaca
gggtccatggttaacagctggggctcagcatcggaggacaacatctcatctggcaggtcc
agcgttgtcagcacttcggaaggatccttctttacggacggcgatttcaaccaggcagcg
gcctcttcacgggatattgtaggcctgcgcatgtgccgatacccagaggagtcaggccgg
cggctccaacggccgagcagccccatgtccactgacagcaacatgagtcctgcaataaca
cataaaaggcccagaagacataaacagaaccagtctggtgaacaaggctaccagcccaaa
gatgtcttcaatgatgactcctgcatgcctatgaatttttccagccagatgtcccactgc
gactataatgtgaggggcgccacgctgcctcgggtgggctctggggaggcccggggtcga
cgcggcagcactgggactcacagggccagggaggctgcatcagagcagagggagagtcac
gacaagcacaagactccaggaggaggagggagaggaagcagcaaaagccgacagcactca
gaaattggagatgtccttctgtacagtcgtccctctttcccatcagggcaagctcagagg
gaacctgatgacacaaattcctccagcttcatgtcgtgtggagactcaaggaccaaacag
ggaggacagaaggaagagttcctgaagagctaa
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integrated database retrieval system
