Pungitius pungitius (ninespine stickleback): 119215699
Help
Entry
119215699 CDS
T07626
Symbol
pds5b
Name
(RefSeq) sister chromatid cohesion protein PDS5 homolog B isoform X1
KO
K11267
sister chromatid cohesion protein PDS5
Organism
ppug
Pungitius pungitius (ninespine stickleback)
Pathway
ppug04110
Cell cycle
Brite
KEGG Orthology (KO) [BR:
ppug00001
]
09140 Cellular Processes
09143 Cell growth and death
04110 Cell cycle
119215699 (pds5b)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
ppug03036
]
119215699 (pds5b)
03400 DNA repair and recombination proteins [BR:
ppug03400
]
119215699 (pds5b)
Chromosome and associated proteins [BR:
ppug03036
]
Eukaryotic type
Sister chromatid cohesion proteins
Other sister chromatid cohesion factors
119215699 (pds5b)
DNA repair and recombination proteins [BR:
ppug03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
Shu complex and associated proteins
119215699 (pds5b)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
PDS5
PI-TkoII_IV
HEAT_EF3_N
EnP1_C
Motif
Other DBs
NCBI-GeneID:
119215699
NCBI-ProteinID:
XP_037323972
LinkDB
All DBs
Position
16:10970112..10991467
Genome browser
AA seq
1415 aa
AA seq
DB search
MAHSKARVTDGKVTYPPGVKEISDKISKEEMVRRLKMVVKTFMDMDQDSEEEKELYLNLA
LHLASDFFLKHPDKDVRLLVACCLADIFRIYAPEAPYTSPDKLKDIFMFITRQLKGLEDT
KSAQFNRYFYLLENIAWVKSYNICFELEDSNEIFTQLYRTLFQVINNGHNQKVHMHMVDL
MSSIICEGDTVSQELLDTVLVNLVPAHKNLNKQAYDLAKALLKRTAQAIEPYITNFFNQV
LMLGKTSVSDLSEHVFDLILELYNIDSHLLLSVLPQLEFKLKSNDNDERLQVVKLLAKMF
GAKDSELAAQNKPLWQCYLGRFNDIHVPIRLECVKFASHCLMNHPDLAKDLTEFLRVRSH
DPEEAIRHDVIVSIVTAAKKDLSLVNDALLNFVKERTLDKRWRVRKEAMMGLASIYRKYS
LQGEGGREASKQISWIKDKLLHIYYQNSIDDRLLVERVFAQYMVPHNLETTERMKCLYYL
YATLDTNAVKALNEMWKCQNLLRHHVKDLLDLIKKPKSDASSKAVFAKVMVITRNLPDPG
KAQDFVKKLAQVLDDDERIRDQLETLVSPSCSCKQAEVCVRDITKKLGSPKQPSNPFLEM
VKFLLERIAPVHIDTESISALVKQVNKSIDGTADDEEEGVPTEEAIRAGLELLKVLSFTH
PVSFHSAETFESLLGCLKMDDEKVAEAALQIFKNTGSKMEESFPHIKSVLLPVLQAKAKR
GPPRQAKYAIHCINTMFTNRDTHFAQIFEPLHKGLDPANLEQLITPLTTLGHLAQLAPEQ
FAAPLKSLVANFIVKDLLMNDRIPGKKTTKLWVPDEEVSPETLAKIQGIKLMVRWLLGVK
NNQSKSGNSTLRMLTAILHSDGDLTEQGRMGKPDMSRLRLAAACALLKLAQEPCYHEIVT
LEQYQLCALVINDECYQVRQGFSQKLHRGLCRLRLPLEYMAVFALCAKDPVKERRAHARQ
CLVKNVNIRREYLKQHAAISDKLFSLLPEYVVPYTIHLLAHDPDYVKVQDIEQLKEIKEA
LWFVLEIIMAKNENNSHAFIRKMVENIKQTKDAQSPTDAKTNEKLYTVCDVAMHIIMSKS
TTYSLESPKDPVLPTCFFTKPDKNFSNTKNYLPAEMKSFFTPGKPKSANVLGAVNKPLSS
AGKPIQSKASRMETASNDDPSSNPGSPQRSKTRLDSTEMDHSENEDISLKRADTTDKDVE
KPRGRKRAVTSADDQDSKPKRGRKKAAANTAAVAESEDQWDEDNRPEDEQNSPPKKARRG
RPPKAATPGQDTPAKGKRGRKKAAPPPEEEEEEGDEEEEEEEEEEEAEAAAAVEEEEEED
GSSENTELKTKGGRPARAPRRSQGRAEPAESTPQKRRGRPPKSAQPPAKNPARGGRSKAA
AAKEDSEEEEDEDEEEEEPTPKVPTGRKKPAGRRR
NT seq
4248 nt
NT seq
+upstream
nt +downstream
nt
atggctcactctaaagctcgagtcacagatgggaaggtcacctaccccccgggggtcaag
gagatctccgacaaaatctccaaagaggaaatggtccgcaggctcaagatggtcgtgaag
accttcatggacatggaccaggactccgaggaagagaaggagctgtacctgaacctggcc
ctccacctggcctccgactttttcctcaaacacccggacaaagatgtccgtctactggtg
gcttgctgtctggcggacatattcaggatttacgccccagaggcgccctacacctcccca
gacaaactcaaggacatttttatgttcatcacaagacagctcaaaggactggaggacact
aaaagcgctcagttcaacagatacttctatctgctcgagaacatagcgtgggtgaagtcc
tacaatatttgctttgagcttgaagacagcaatgagattttcacccagctttacagaaca
ctcttccaggtcatcaacaacggccacaaccaaaaggtgcacatgcatatggtcgacctg
atgagctccatcatctgtgagggagacactgtgtcgcaggagctgctggacactgtgttg
gtcaacctggtccctgcacacaagaatttgaataaacaagcgtacgacctggccaaagcg
ctgctgaagagaaccgctcaggctattgaaccatacatcaccaacttcttcaaccaggtg
ctgatgctggggaagacctcggtcagcgatctgtctgaacatgtcttcgacctcatcctg
gagctctacaacatcgacagccacctgctgctctctgtgttgccgcagctggagtttaag
ctcaagagtaatgataatgacgagaggttgcaagtggtgaagctgctggctaagatgttt
ggagcaaaggactctgagttggctgcacagaacaaaccgctctggcagtgttacctcggc
aggtttaacgacatccacgtgcccatcaggctggagtgtgtgaagttcgccagtcactgt
ctaatgaaccacccggacttggccaaagacctcacagagttcctgagggttagatcacat
gacccagaagaagccatccgccacgatgtcatcgtgtctatagtaactgctgccaagaaa
gacttgtctctagtaaatgatgcgttgctcaattttgtaaaggagaggactttggacaag
cgatggcgtgtacgtaaggaggccatgatgggcttggcatcgatctacaggaagtactct
ctgcagggagaaggagggagggaggcctccaagcagatttcctggatcaaagacaagctc
cttcatatctactaccaaaacagcattgatgacaggttgctggtggagcgggtctttgcc
cagtacatggttcctcacaacctggaaaccactgagaggatgaagtgtctgtactacctg
tacgccaccctggacacaaatgctgtcaaagctttgaatgagatgtggaagtgccagaat
ctgctgaggcatcatgtcaaagacctgctcgacttgatcaagaaacccaagtctgatgca
tcaagcaaggccgtatttgccaaagtcatggtgatcacaagaaacctgccagacccggga
aaggcccaggactttgtgaagaagctggctcaggtcctggatgatgacgagcggatcaga
gatcagttggaaaccctggtcagcccctcgtgttcctgcaagcaggccgaagtctgtgtg
cgagacatcaccaaaaagctcggcagccccaaacagcccagcaatccattcctggaaatg
gtcaagttccttctggagagaattgctcccgtacatatcgacacagaatccatcagcgcg
ttggtgaaacaggttaacaaatctatagacggaacagctgatgacgaggaggagggcgtc
cccactgaagaggccatcagagcaggactggaactgctaaaggtgctttcgttcacacac
ccggtgtcgttccactctgcagagacgtttgagtctctgcttggctgcctgaagatggat
gacgagaaggtcgcggaggctgctctgcagatcttcaagaacacgggcagcaagatggag
gagagctttcctcacatcaaatccgttttgctgcctgtactgcaggccaaagccaagcga
gggcccccccgccaggccaagtacgccatccactgcatcaacaccatgttcaccaacaga
gacacacacttcgcccaaatctttgagcctctgcacaaaggcctggaccctgctaacctt
gagcagctcatcactcctctgaccactctgggtcatctggctcagctggccccggaacag
tttgctgcgccgctcaaatccctcgtcgccaacttcattgtgaaggatctgctcatgaat
gaccggattccgggcaagaagacaaccaaactttgggttccggatgaggaagtgtccccc
gagactctggctaagatccagggaataaagctgatggtccggtggttactgggagtgaag
aacaatcagagcaaatcaggcaactccacgctgaggatgctgactgctattctacacagc
gatggagacctaacggagcagggcaggatgggaaaaccagacatgtcccggctgcggctg
gcggcggcgtgcgcccttctgaagctggcccaggagccctgctatcacgaaatcgtcacg
ctggagcaataccagctgtgtgcgctcgtcatcaacgacgagtgctaccaagtgcgacaa
ggtttttcccagaagctccaccgggggctgtgccgcctccgtctgcctctggagtacatg
gcggtgtttgctctgtgcgccaaggaccccgtgaaggagaggagggctcacgcacgccag
tgcctggtgaaaaatgtcaacatacgcagagagtacctcaaacagcacgctgccatcagt
gacaagctgttctctctgctgccggagtacgtggtgccttacaccatccacctgctggca
catgaccccgactacgtcaaagtacaggacatcgagcagctcaaagaaatcaaagaggct
ctgtggttcgtcctggagattatcatggccaagaatgagaacaacagccatgcctttata
aggaaaatggtggaaaatatcaaacagacgaaagacgcgcagtcccccactgatgccaaa
accaacgagaaactctacacggtgtgcgatgtggccatgcacattatcatgtcaaagagc
accacctacagcttagagtctccaaaagaccccgtgctgcccacatgcttcttcaccaaa
cccgacaagaacttcagcaacacaaaaaactatctgccagcagagatgaagtctttcttc
acacctggaaagcccaagtcggctaacgttttgggtgcagtgaacaagccgctgtcgtcc
gcggggaaaccaattcagagcaaagcttcgcgcatggagacggccagcaacgacgacccg
tcgtccaacccgggctccccgcagcgcagcaagaccaggcttgacagcacagaaatggat
cacagtgaaaacgaggacatcagcctaaagcgagccgacaccactgacaaggacgttgaa
aagccccgcggtcgaaaacgagcagtgacctccgctgacgaccaggacagcaaaccgaag
cgcggccgcaagaaggcggcggccaacacggccgctgtggccgagtccgaggaccagtgg
gacgaggacaaccggccggaggacgagcagaacagcccgcccaagaaggcccggcggggc
cggcccccgaaggcggccacgccgggccaggacactccggccaaggggaagaggggccga
aagaaggccgctcctccgccagaggaggaggaggaggagggagatgaggaagaggaggag
gaggaggaagaagaggaagcagaggcggcggcggcggtggaggaggaggaagaggaggac
gggagcagtgaaaacactgagttgaagaccaagggaggccggccagccagagcgccgcgg
cgatcacaaggcagggcggagccggcggagtccacgccgcagaagaggaggggacgtccg
cccaaatcggcccagccccccgccaagaatccagcgcgcggtgggcgatcgaaggcagct
gctgctaaagaggactcggaggaggaagaagacgaagacgaggaggaggaggagccaaca
ccgaaggtaccgacgggacgcaagaagccagcggggcgaagaagatga
DBGET
integrated database retrieval system
