Pungitius pungitius (ninespine stickleback): 119215704
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Entry
119215704 CDS
T07626
Name
(RefSeq) E3 ubiquitin-protein ligase Midline-1-like
KO
K08285
midline 1 [EC:
2.3.2.27
]
Organism
ppug
Pungitius pungitius (ninespine stickleback)
Pathway
ppug04120
Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:
ppug00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04120 Ubiquitin mediated proteolysis
119215704
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
ppug04121
]
119215704
Enzymes [BR:
ppug01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
119215704
Ubiquitin system [BR:
ppug04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
TRIM/RBCC proteins
119215704
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
COS
SPRY
ANCHR-like_BBOX
zf-B_box
fn3
zf-RING_UBOX
RING_XB3-XBAT31
zf-C3HC4_4
TRIM_CC
zf-C3HC4
PRY
FN3_DSCAM-DSCAML_C
zf-C3HC4_3
zf-RING_2
Pur_ac_phosph_N
F36G3_coil
zf-C3HC4_2
zf-RING_5
NDNF
Motif
Other DBs
NCBI-GeneID:
119215704
NCBI-ProteinID:
XP_037323987
LinkDB
All DBs
Position
3:25407984..25445292
Genome browser
AA seq
687 aa
AA seq
DB search
MDTLESELTCPICLELFEDPLLLPCAHSLCFGCAHRILISHCATNESVQSIGAFQCPTCR
YVISLSPERGLEGLKRNVTLQNIIDRVQRASSSAGVSLPLPAPHSGPNSPGEEGSDRLAL
VPFSAAMSSPVMPPEPVQCQFCEQDPPQDAVKTCVTCEVSYCEECLRATHPNKKPFTGHR
LIEPMPDSHLRGLQCLEHDEEKVNMYCVTDDQLICSLCKLVGRHRDHQVAALSDRYEKLK
QALDSNLTNLIKRNNELESLMGKMIQTCQHVEVNASRQEGKLLEECDVLIEIIQQRRQII
GNKIKEGKAQRIRKLAQQISNCKQCIERSSALITQADQTLKETDHARFLQTAKSINERVS
MANASTQVLIPEIHLTDTFDTVALDFTREKKLLENLDYLTAPSAPCIREELCTASYDTIS
VHWTSDDEFTVVSYELQYAIFTGQSNIASLCNSLESWMIVPNIKQNHYTVHGLQSGTKYI
FVVKAINQAGSRSSEPGTLKTNSQPFKLDPKSAHKKLKVSHDNLTVERDETTSKKGHSQE
RFTSQSSYGVVGNVYIDSGRHYWEALIGGSTWYAVGIAYKSAPKHEWIGKNAASWVLCRC
NNSWVARHNSKELAIEPSPHLRRVGVLLDYDAGDVTFYDAVSSQHLHTFHVAFAQPVCPV
FNVWNKCLTILTGLPIPDHLEGLEPEN
NT seq
2064 nt
NT seq
+upstream
nt +downstream
nt
atggacactctggagtcagagctgacctgtccaatctgcctggagctttttgaagacccg
ctactgctcccctgcgctcacagcttgtgcttcggctgcgcccatcgcatcctcatctcc
cactgcgccaccaacgaatccgtccagagcatcggcgccttccagtgtcccacctgtaga
tatgtcatttccctgagtccggagcgcggactagaaggactcaagagaaacgtgaccctg
cagaacattatcgatagagttcagcgggcctcatcttcggccggggtgtccctgccgctg
cccgcgccccacagcgggcccaactctcccggcgaggaagggagcgaccggctggcgctg
gtcccgttcagcgccgccatgtccagcccggtcatgcctcctgagccggtccagtgccag
ttctgtgagcaggacccgccgcaggacgccgtcaaaacgtgcgtgacgtgcgaggtgtcg
tactgcgaggagtgcctcagggccacgcaccccaacaagaagccgttcaccggccaccgg
ctcatcgagcccatgccggactcccacctcagggggcttcagtgcctggagcacgacgag
gagaaggtcaacatgtactgtgtcacggacgatcagctcatctgctcgctgtgcaagctg
gtggggaggcacagggaccaccaggtggcggccctgagcgaccgctacgagaaactcaag
caagccctggactccaacctcaccaacttgatcaagaggaacaacgagctggagtctctt
atggggaaaatgatccagacttgtcaacatgtagaggtgaacgcgtcccgccaggagggc
aagctgctggaggagtgcgacgtgctgatcgagatcatccagcagaggaggcagatcatc
ggcaacaagatcaaggaggggaaggcgcaaaggatccggaagctcgcccaacagatctcc
aactgcaagcagtgcatcgagaggtcctccgccctcatcacgcaggccgatcagacgctc
aaggaaaccgaccacgctcgcttcctgcagaccgcaaagagcatcaacgagagggtttcc
atggcgaatgcatccacccaagtgctgattcctgagatacacctaacggacacctttgac
acggtggccctggacttcaccagggagaagaagttgctggagaatctggattacctcaca
gctccaagcgctccgtgcataagggaggagctgtgcaccgcgtcgtatgacaccatctct
gtgcactggacgtctgacgacgagttcaccgtggtgtcctatgagctccagtacgccatc
ttcactgggcagtctaacattgccagtttgtgcaactcactggagagctggatgattgtc
cccaacatcaagcagaaccactacacggtgcacggcctgcagagcggcacaaagtacatc
tttgtcgtcaaggccatcaaccaagcgggaagccggagcagcgaaccggggacgctgaag
accaacagccagcccttcaagttggaccccaaatcggcccacaagaagctgaaggtgtcc
cacgacaatctgacggtggagcgggacgagaccacatccaagaaaggccacagccaggag
cgcttcaccagccagagcagctacggcgtggtggggaacgtctacatcgacagcggccgt
cactactgggaggctctgatcggagggagcacgtggtacgccgtgggcatagcctacaag
tcggcccccaagcacgagtggatcggcaagaacgcggcctcctgggtgctctgccgctgc
aacaactcctgggtggcccgccacaacagcaaggagctggccatcgagccctcgccccac
ctgcggcgcgtcggcgtcctgctcgactacgacgccggcgacgtgaccttctacgacgcc
gtgagctcgcagcacctgcacaccttccacgtggccttcgcccagcccgtgtgtcccgtg
ttcaacgtgtggaacaagtgtctgacgatcctcaccgggctgcccatccccgaccacctg
gaggggctggagcccgaaaactga
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