Pungitius pungitius (ninespine stickleback): 119215891
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Entry
119215891 CDS
T07626
Symbol
dchs1b
Name
(RefSeq) protocadherin-16
KO
K16507
protocadherin-16/23
Organism
ppug
Pungitius pungitius (ninespine stickleback)
Brite
KEGG Orthology (KO) [BR:
ppug00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
ppug04515
]
119215891 (dchs1b)
Cell adhesion molecules [BR:
ppug04515
]
Cadherins
Cadherin related
119215891 (dchs1b)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Cadherin
Cadherin_CELSR2_9th
Cadherin_2
RET_CLD1
Cadherin_pro
Cadherin_4
TMEM154
CADH_Y-type_LIR
Cadherin_C_2
FeoB_associated
Motif
Other DBs
NCBI-GeneID:
119215891
NCBI-ProteinID:
XP_037324311
LinkDB
All DBs
Position
16:complement(11437982..11505676)
Genome browser
AA seq
3305 aa
AA seq
DB search
MPITSKRSSWRAWVSGPCVCSSPGRRRPLFYSCILLVLVQSTAVLGALELQLDEEQPAGT
IVGDISAGLPPGETGGLYFISDHESTGISNDLNIDETTGIITTARRLDREQKDHYSFIAV
TMTGVTVQVSITVNDINDHAPVFPKKKGVLKIPEHTSVGTRFSLEPATDADENQLTTQGY
AIREGNVGQAFRLETKRAANKVLYLDLVVHGILDREKRSSYTLVLEAFDGGSPRRMGSMT
LEVTVTDINDHAPVFNQTRYHAIISESLPQGSSILQVFATDEDEGDNGLVLYEINRRQSD
TDRSFVMDIKSGVITLNRPLDYELKRVHELVVQARDNASHPEVTNAFVTIHVRDFNDNQP
TMTIIFLTEDGSPRISEGAQPGQYVARISVTDPDYGEYANVNVSLEGGDGKFALTTKDSI
IYLIYVDQVLDREERDSYELRVMATDSGTPPLRAESSFTIQVTDVNDNPPLFDQQAYRQT
IPEVVYPGSFVLQVTARDKDQGPNGDVRYSLLKGKNSHSDWFSIDKVTGIITTATALDFE
SEPAPSVTVIATDSGRPPLSSTAKVDIVLQDVNDNTPVFSSNFYNASVKENTPAGTCFLQ
VSATDEDRGSFGAISFILGPGAGSTAPTHFTIDKQTGQICTSTALDRDEGLDKFDLTVTA
TDGGGLSSVARVRVSVEDINDNRPTFYPVLYTVSLSTHSAPGTSVVKVTANDPDAGENGR
VTYRAVPAGGTAFFTLNKDTGVISLSRSLHGKANTVISMVISAEDGAGLTAPVNARVNVS
VVGGSVASPVFDQAQYFFTVSEDVLRGTAVGVVRAATKTGAFKDIFYTISSGDPDGYFLV
DSASGTIRTALPLDHETCSNRDLEIQARSGLPPAYGTSRVRITISDVNDNAPAFLPSSSE
SLLLPEITKMGTVIYSIQATDKDSGHNGLLSFDLVSAGVAGSSGQRTFGVDRGSGEVRLI
GSLSYESVPRYDLHVVAKDGGAPQLSSTFTLVVHIQAQDAQGPNFDTLTYRVELRENSPL
NTRFLQVRALNREASGKGGSASSSSSSSISYRLRPDGDAAGFGIMPDSGWLFVRSSLDRE
VKDMYLLTVLATSGPGGVGRTGSAAVRVTVTDENDNSPRLSQERVFLAVKENLPAGTGFG
RVSATDRDTGLNARLTYRLLHTNRHFQINSQTGEISTRHALDREQQSSHQLVVVIQDGGT
PPRSATGTAHISVLDENDHAPSFTRARPDSELLYQVMEGLPSGTVLGTVSAKDPDEGENG
TIYYSLSGSRAERFSLNSASGELRTASPLRYAERAEYAFTVTAADHGTPGLSSTCPLQIQ
VLSSSRSNPEPNMLSMTLNTVEGAAPGSIIGSVRPHGERESNVLEGQVTYLVVGGTDRDG
TFMVDRLKGDVYLVRELDYEKGSKYSLHIEVSDFSRALPSSHLVRLDINVQDSNDHAPQF
TEDPVTIVIPENMQPGASIYTFLAVDQDGSGPNSELHYSIEHHWPDAPDVLTLDPSSGVL
TLGQQLDRESTSSLYLVVRATDRAADPSQRRWGSVTARVFVTDVNDNAPVFSSPSAVSVM
EDQPEGFVILYVMARDEDEGENGRVSYRIQAGNNAGRFSLNANTGSLSVLKALDREEQEI
FNLTIVAEDHGIPQLSTSQVLCVQVLDVNDEAPSFQRAEFEAQVMENRGPGTTVMTVTAT
DGDQGSNGHVTYGGVTEEGFIINPQSGVITTTKELDAELENHYTLTVYARDGGLPPNFAK
AVVRVEVKDVNDNAPIFAKPWYGLEVPENQAAVELCFLKATDPDSGPGGELEYKITAGDR
EGHFQIHASTGALSTSRGLDRETGAEYTLEVVATDRGSPALSTTVTVEVKVLDVNDNSPV
FSRSSYSVEVSEDVAEGSKVLEVSATDADDGLNGKVLYFLSREAHGAFGVDGSTGVITTS
APLDREKWPSYSFQIFAVDLSPAEPRNTSAQVTVTILDVNDNTPIFLQDPLVIEVSTKSS
QRVLATMKAEDKDFGANGSVFYRFAMPVKGFSINSLTGEIQATRPLADLTQAERTLIVEA
MDQGTPAQSAQGVVVIYVKEVEYSGIRFSRNARDVSLQENALQGTAVAQAQAQHPDGTRN
GISYSLFSGNRKQAFHISSSTGEIMVQSSNGLDFEDTPKLRIVVKAETVSSTSFTAINLI
LQDVNDNLPRFQLQNYVAYMRETQGYEMPIIQVMAEDVDQGQNGQVTYSIQSSGISGLFK
IDPTTGSITTAAIMDREIFTQTKLVVTATDRGSPPLAGSATLTVIIVDQNDNSPTIPLPQ
EVRIPENLLIGTEITLVTGNDVDSSPALSYSLQLDPTSLGKFGIHRYSGGVSLTAPLDFE
EKTWYTVTVRATDSQHQTEANITILVEDINDNAPAFTHDLYQVTLPEHTPPGSIVVTVTA
TDRDSGENGKVTYRVTSSTQEGFYVDPNNGTLFINHRAEFDPERPTVSIVIEACDAGSPS
LSSLTTVQVQISDVNDNAPVFHQSDYRATVSEDTIPGSTVLTFEAFDSDLSRENCGFDFA
IANGNEGNAFQIESSVRFLEGRGFQTVGSLLLAEGLDFETKPLYNLTVVVSDRGVPQRSS
SVAAVITIGDVNDNPPVFSRTEYAVSLSEGAAAGTEIIRLTATDPDSTPHAEVHYAISSG
DEVNLFTVDQWTGALRLQRALDREHRSTHIVIIQATDGQGHIALAPVTVEVKDVNDNYPF
FPVEVLTVSIKENQPANSAVTVLHAIDHDTGVYGQLRYYIVERSMAGKDSFTVDQNSGEV
KSKIAFDFEKVNSFNFVAVAVDSGNHSATVTVQVFVTGEDEYDPIFTSPDFSFDVPEEAK
KGQSIGQVQASDEDEGVDGIVLYSLPASSQYFEVNKTTGVIFLKLDGSGSSTSSGAGRTK
RETRLMTLEVRAHSPLDASRTATAQVSIDVTNTNYGLAPDVNILLISVIAVSLGFIVLLV
VMAVVVFLVKSRRRKKAQGAGNRTVATGTALQKLDDCNSGSGGEKIYHQALPGYAGDQGG
AGGGPYTRGGSLDPSHSSGRGSAEAAEDDEIRMINEYPRVASITSSMQEHISARGPDSGI
QQDADQLSDISCEPAALEGSTWFKGKKLGGSLSGTLLSGQLPVYRDDGGGYLGAGRGLNI
SLPKDYAFPEDGKPSVDGSLTAIVASDEELRGSYNWDYLLNWCPQFQPLANVFTEIARLK
DETAQQSQNPRQPFQPKHKMDPKPRIDPPPLITSVAHPGAMSVPPKVPVIGRTFPHLASL
RRSPISHEGSISSAAMSPSFSPSLSPLAARSPAVSPFGVNQGPSASMISTREPSLDQSPD
REMRI
NT seq
9918 nt
NT seq
+upstream
nt +downstream
nt
atgccgataacaagtaaacggtcaagctggagggcctgggtcagcgggccctgtgtgtgt
tcaagtcctgggcgacgaagaccactcttttattcatgcatcctcttggttcttgtccag
tctacggccgtcctcggagcattggagctccagctggatgaggagcagcctgctgggacc
atcgtaggtgacatcagcgctgggttaccgcctggtgaaaccgggggtctttacttcatc
tcggaccacgagagcacaggcattagcaacgacctgaacatcgacgaaaccacaggcatc
attaccacagcacgccgcttggaccgtgagcaaaaggaccactatagctttattgctgtg
acgatgacaggagtcactgttcaggtgtcgatcaccgttaacgacatcaacgaccatgca
cctgtgttccccaaaaagaaaggtgttcttaagattcctgagcacacctcggtggggaca
aggttttccttggaacccgcgacagatgcagacgagaaccagctgaccactcaaggctac
gcaattcgagagggaaacgtgggccaggcgttcagactggagactaagagagcagccaac
aaggtgctgtatctagacctggtggtccatggcattctggacagggagaaacgctcatcg
tacacgctggtcctggaagcctttgatgggggatcacccagaaggatgggatccatgacc
ctggaagtgactgtgacggacatcaacgatcacgctccggtcttcaatcagaccagatac
cacgctattatctccgaaagtctcccacaaggcagcagcatcctacaggtgtttgcaaca
gacgaggatgagggcgataacggtcttgtcctttatgaaatcaaccggcgtcagagtgac
actgatcgctcctttgtcatggatattaagtctggcgtcatcactttgaacaggcccctt
gactatgaactgaagagggttcatgaacttgtggtccaggccagggataacgccagccac
cctgaggtgaccaatgcgtttgtgaccattcatgtccgcgacttcaatgacaaccagccc
accatgaccatcatcttcttgacggaggacggctctccgagaatctccgaaggggcccaa
ccgggccagtacgttgctcggatatctgtcacagacccagactatggagagtacgccaac
gtgaatgtttcccttgaggggggcgatgggaagtttgctctcacaaccaaggacagcatc
atctacctgatatatgttgaccaggtcttggaccgagaggaacgggactcttatgaactg
agagtaatggccacagactccggcacacctcccctcagagcggagtcctccttcaccatt
caggtgactgacgtcaacgacaacccccctctttttgaccagcaggcctatagacagact
attcctgaggttgtctatcctggttcctttgttctccaagttactgccagggacaaagac
cagggccccaatggggatgtgcgatatagcctcctcaagggcaaaaactctcactctgat
tggttttccattgacaaggtgactggtatcattaccacagcgacggctctggatttcgaa
tcagagccagcacctagtgtgacagtaatcgcaacagatagcggccgcccgccattgtct
tccacagcaaaggtagacattgtgctgcaggatgttaacgataacacccctgtgttctcc
agcaacttctacaatgcctccgtcaaggagaacaccccagctgggacctgcttcttacag
gtgtcagccacggatgaggaccgcggttcctttggcgctatatccttcatcctgggacct
ggcgctggaagcacagcaccaacacactttaccatcgacaagcagactggccagatttgc
accagcacagctctggacagggatgaaggcttggacaagtttgacttgaccgtcactgca
actgatggaggtggtctcagctcagtagcgcgtgtgagagtctctgtggaggacatcaat
gacaaccggcccaccttttatccggtcctctacacagtcagtctgagtacccatagtgcc
ccgggaacctccgttgtcaaggtaacagcgaatgaccctgatgccggggaaaacggcagg
gtgacctatcgcgcagtgcctgctggaggaactgctttcttcactctcaacaaggacacg
ggcgtgatttctctctctcgctcgctccacggcaaagccaacacggtgatctccatggtc
atatcagccgaggacggcgccggtctgacggcgccggtcaatgccagggtaaacgtgagt
gtggtgggaggctcagtggcgtctcccgtctttgaccaggcccagtatttcttcaccgtg
tcggaggacgttctcagggggacagcggtgggagtggtccgagctgctaccaagacaggc
gctttcaaggatatattttacaccatttcctccggagaccccgatggttacttcctggtg
gacagtgcctctggaaccattcgcactgcccttcctcttgaccacgaaacctgctccaat
cgtgacctggagatccaggcgcgctccggacttcctccagcgtacggaaccagccgggta
cgaataactatttcagacgtcaatgacaatgccccggccttcctcccgtcgtcgtcagag
tccctgcttttacctgagatcaccaaaatggggactgttatctacagcattcaggccacc
gacaaggactctggtcataacggcctgctcagcttcgacctggtttctgcaggagttgca
ggcagcagcggccagaggacgtttggcgtcgaccgcggcagcggggaggtacgtttgatc
gggagtctttcttatgaaagcgtaccgcgctatgacctgcacgtggttgccaaggatggc
ggtgcgcctcagctcagctccactttcaccctggtggtccacatccaagcccaagatgca
caaggccccaacttcgacaccctgacctaccgcgtggagctacgggaaaacagccctctc
aacacacgtttcctccaagttcgagccctcaacagggaggcttctggaaagggagggagc
gcttcctcatcttcttcatcctccatttcctaccggcttcggcctgacggcgacgctgcc
ggctttggcattatgccagacagcgggtggctgtttgttcgtagctctctcgaccgagag
gtcaaagacatgtacctgttgactgtcctggcaacctccggtccaggaggggtggggaga
accggcagtgccgcagtcagggtgacggtaactgatgagaacgacaattccccgagactg
agccaggagagggtgttcctggctgtcaaagagaacctgccggcagggaccggcttcgga
agggtgtctgcaacggacagagacacgggactaaatgctcgactcacctacaggctgctg
cacaccaacaggcactttcagatcaactcgcaaacaggggagattagcacccgccacgct
ttggacagagagcagcagtccagccaccagcttgttgtggtcatacaggatgggggcacg
cctcctcgcagcgccaccggcaccgcgcatatcagtgtgctggacgaaaacgaccacgcc
cccagttttactcgtgccaggccggacagtgagctgctctatcaggtgatggaggggctt
ccatccgggactgttttagggacagtctctgctaaagaccctgatgagggagagaacggg
accatatactactcattatcaggctccagagccgagcgtttctcccttaactcggccagc
ggggagctccggaccgcgtcgcctctgagatacgccgagcgcgccgagtacgccttcacc
gtaaccgctgctgaccacgggacacccggcctcagctccacatgcccgttacagatacag
gttctcagctcctctcggtccaaccccgagcccaacatgctctccatgaccctaaacaca
gtcgaaggcgctgctccgggctccatcatcggctctgtccgtccacatggcgagcgtgaa
tctaatgtgttggaaggccaggtgacctacctggttgtcggggggacagaccgggacggg
actttcatggtggaccgcttaaagggcgacgtgtacctggtgcgtgagctggactacgag
aagggctcgaagtatagcctgcacatcgaggtgtctgacttctcccgggcgttgccgagc
agccacttggtccggctggatatcaacgtgcaggacagcaatgaccacgctccgcagttc
acagaagaccccgtgaccatcgtgatcccagagaacatgcagccaggggcttctatatat
accttcctggctgtggatcaggatggcagtggacccaacagtgagctgcactactccatc
gagcaccactggcctgacgcgccggatgtcctgaccctcgacccctccagcggagtcctg
acccttgggcagcagctggatcgtgagtcaacatcttccctgtacctcgtggtgcgggcc
acagaccgggccgcggatccctcccagaggcgctggggctcagtcaccgcccgggtgttt
gtgacggacgttaacgacaacgctccggtcttcagctctccttctgcagtcagcgtcatg
gaggaccagccagaaggatttgtgattttgtatgtgatggctcgagatgaagatgaaggg
gaaaatggcagagtgtcgtacaggatccaggcaggcaacaacgctggccgcttcagtctt
aacgccaacacaggttctctctctgtccttaaagcactagaccgggaagagcaggaaatc
ttcaatctgaccattgtggcagaggatcatgggattcctcagctttccacttctcaggtg
ttgtgtgtccaggtcttagacgtgaacgatgaagctccgtcgttccagcgagcagagttt
gaggctcaggtgatggaaaaccgaggacctggaacgactgtcatgacagttactgccact
gacggggatcaaggttctaacggccacgtgacgtatggcggtgtgacagaggaaggcttc
atcatcaaccctcagtcaggagtcatcaccaccaccaaggaactggatgcagagcttgag
aatcactacactctcactgtgtatgcacgggacggaggactgcctcctaactttgccaag
gctgtagtgcgtgtggaggttaaggatgtgaacgacaacgctcccatctttgctaaacca
tggtacggactggaggtgccggagaaccaggccgctgtagaactttgctttctcaaggcc
acagacccggactctggtcctggtggagagctggagtacaagatcaccgctggggaccgt
gagggacatttccaaatccacgccagcacaggagcgctgtccacgtcacgcggcctagac
agggagacgggagctgaatatacattggaggtggtggccacggaccgaggcagccctgct
ctcagcaccactgtcactgtggaagtcaaagtgctggatgtcaatgacaacagccccgtc
ttcagcagaagcagttactctgtggaagtgtcagaggatgttgcagaggggtccaaagtt
ctggaggtgtcagccacggatgctgatgatggactgaatgggaaggttctgtactttctg
agccgagaggcgcacggagcgttcggtgtggatgggagcactggtgttatcaccacatca
gcacctctggaccgggaaaaatggccgtcatacagcttccagatttttgctgtagacctt
tcacctgctgaaccccggaacacctctgctcaggtgacggtcaccatcctagacgtcaac
gacaacactcccatcttcctccaggacccgctcgtcatcgaagtgtccactaagagttcc
cagcgggttttagccaccatgaaggcagaggataaagactttggagccaatggttctgtt
ttttaccgtttcgccatgccagtcaagggattcagcatcaactccctgactggtgagatc
caagccaccaggccactggcggatctgacccaggctgagaggaccctgatagtggaggcc
atggaccagggtactccagctcagtctgcccagggggtggtggtgatttacgtgaaggag
gtggagtacagcggtattcgcttctctaggaatgccagagacgtcagcctacaggagaat
gccctacaaggcacggctgtggctcaggctcaggctcaacacccggatggcacacgtaac
ggtattagctacagcctgttcagtggcaatagaaagcaggccttccacatcagctcctca
acaggtgaaatcatggtgcagagctccaacggtttggattttgaagacaccccaaaactc
cgtatagttgtgaaagctgaaacggtgtcatccacatctttcacggctatcaacttgatc
ctgcaggatgtcaatgacaaccttcctcgctttcagctgcagaactacgtggcctacatg
agagaaacacagggctatgagatgccaatcatacaggtgatggctgaggatgtcgatcag
ggccaaaatggtcaggtgacttactccatccagtcatcaggcatcagcggcttgtttaag
atagacccgacgacgggaagcatcaccacagcagccatcatggaccgtgagatctttacc
cagaccaagcttgtagttacagccactgatagagggagtccaccactggctggttcggcc
acattgacggtgataattgtcgaccagaacgacaacagtccgaccattcccttgcctcag
gaagtccgcatcccggagaatctgttgattggcacagagatcacccttgtgacgggtaac
gatgtcgactccagtccggccctctcctactccttgcagcttgacccaacatccttaggc
aagtttgggatccaccgctacagtggaggcgtatcactcactgcccctctggactttgag
gagaagacgtggtacaccgtgactgtgagagccacagacagccagcatcaaaccgaggct
aacattacaatactggtggaggacattaatgacaacgcacctgcgtttactcatgatctc
tatcaggtaactctgcctgagcacacgccaccaggaagcatcgttgtcacagtaacagcg
actgacagggactccggagagaacggaaaggtcacctacagagtgacctcatcaacccaa
gagggtttctacgttgaccccaacaacggaaccctgttcatcaatcacagagccgagttt
gaccctgaacgtcccacagtcagcattgttattgaagcgtgtgatgcagggtcgccttcg
ctctcctccctcaccaccgtccaggtccaaatctctgacgtcaatgacaatgctcctgtg
tttcaccaatcagattacagggctacagtttctgaagataccatcccaggctcaacagtt
ctgacctttgaggcctttgacagcgacctctcacgggaaaactgtggcttcgactttgcc
attgccaacggaaacgagggaaacgcattccagatcgaaagcagcgtacggttcctggag
ggacgaggctttcagacagttgggagtctgcttttggccgagggactcgactttgaaacc
aaacccctttacaacctcaccgtggtcgtgtcagaccgcggcgtgccccagcggagctct
agtgtcgcagcggtaatcaccattggggatgtgaatgataaccctccagtgttcagcaga
acagaatatgccgtgtcgctgagcgagggagctgccgccgggactgagattatacggctg
actgcgacagatccagactcaactccccatgctgaagtccattacgcaatcagctctggt
gatgaggtgaacttgtttaccgtggaccagtggaccggtgcgttacggcttcagcgagca
ctcgaccgcgagcaccggtccacgcatattgtcatcatccaggccacagatggacagggt
cacattgcactagctccagtcaccgttgaggtgaaagatgtaaatgacaattatccgttc
tttcccgtggaagtcctgacagtcagtatcaaagaaaaccaaccagcgaactcagctgtg
acagttctacatgccatagatcatgacacaggagtttatggtcagctgaggtactacatt
gtggagcggtccatggcaggaaaagacagcttcactgtagaccagaactctggagaagtc
aaaagcaaaattgcatttgactttgagaaggtcaattcatttaactttgtagcagtggca
gtagattcaggaaaccactcagccactgtaactgtacaggtgtttgtcacgggtgaagat
gagtatgacccgatcttcacatcccctgatttctccttcgatgtcccagaggaagctaag
aaaggccagagcatcggccaagtccaggcaagtgacgaagatgaaggagtggatggcata
gttctgtattctcttcctgccagctcccagtactttgaagtaaacaaaaccactggggtc
attttcctcaagttggacggctcgggcagcagtactagcagtggtgctggccggaccaaa
cgggaaaccaggctgatgaccctagaagtgagagctcacagtccattagatgcatctcgc
accgctacagcccaggtctccatcgatgtcacaaacaccaactatggccttgcccccgat
gtcaacatcctactgataagcgtcatcgccgtgtctcttggtttcatcgtgttgcttgtg
gtcatggctgtggtagtgttccttgtcaagtcacgcaggaggaagaaggcccagggtgca
ggaaatagaactgtggccacgggaactgctctgcagaaattggatgattgcaactcagga
tcaggaggggagaagatctaccaccaggctttgccaggctatgctggagatcagggtggg
gccggtggtggaccctacactagaggaggctctctggatccctctcactccagtggaaga
ggatctgctgaggcagcagaagatgatgagatcaggatgataaacgagtatccccgtgtc
gcctccatcacctcgtccatgcaggagcacatctctgccagaggaccagactctggaatt
cagcaggatgctgaccagctctccgatatctcctgtgagccggctgctctggaaggcagc
acctggttcaaaggaaagaaactgggaggcagtctcagtgggacattgctatctggccag
ctgccagtctatagggacgatggaggagggtacctaggggcaggccgtggcctcaacatt
tcacttcccaaggattacgccttcccagaggatggcaagccttcagtggatggttctctc
acagctatcgttgccagtgacgaggagctccgtggaagttataactgggattacttactc
aactggtgccctcagttccagcccctggctaatgtcttcacagaaattgccaggctgaaa
gatgaaactgcccagcagagccaaaatcctcgccaacctttccagcccaagcacaaaatg
gatccaaaacctaggattgatcccccaccactcatcacatcagttgctcatccaggggcc
atgtcagtcccccccaaggtccctgtgattggacggacattcccccacctggcctcactc
cgcaggtcccctattagtcacgagggatccatttcgtcagcagcaatgtccccgagcttc
tccccttcgctgtctcctttggcagctcgatctccggctgtttctccctttggcgtcaat
caagggccctcagcatccatgatcagcaccagggagccctcactggaccagagtcctgat
cgcgagatgagaatatga
DBGET
integrated database retrieval system
