Pungitius pungitius (ninespine stickleback): 119215905
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Entry
119215905 CDS
T07626
Symbol
exosc8
Name
(RefSeq) exosome complex component RRP43 isoform X1
KO
K12586
exosome complex component RRP43
Organism
ppug
Pungitius pungitius (ninespine stickleback)
Pathway
ppug03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ppug00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
119215905 (exosc8)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ppug03019
]
119215905 (exosc8)
Messenger RNA biogenesis [BR:
ppug03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Core exosome factors
119215905 (exosc8)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
RNase_PH_C
NYN_YacP
Motif
Other DBs
NCBI-GeneID:
119215905
NCBI-ProteinID:
XP_037324351
LinkDB
All DBs
Position
16:11212482..11215117
Genome browser
AA seq
280 aa
AA seq
DB search
MIFIRKISRVAEPLEYHRSFLKENCRPDGRELSEFRTTTVNIGSISTADGSALVKVGNTT
VICGIKAELTTPAVEAPGKGYIVPNVDLPPLCSSRFRPGPPGEQAQAASQFVADVIESSE
LMQTEDLCIERGKLCWVLYCDMMCLDYDGNVLDACIIALLAALKNTQLPEVTISKETSLP
EVNFEERRGLNIRKHPVGTSFCVFDDSILIIDPTADEESLSTAHLTVVTDDEDRLCIVHK
PGGTPLSGEKLQECINRATTRQREIQKLIDKVVRSVKAAK
NT seq
843 nt
NT seq
+upstream
nt +downstream
nt
atgatatttatacgtaaaatctccagagttgctgagcctctggagtaccacaggagcttt
ctcaaagaaaactgtcgtccagatggacgcgagctgtcagagttcagaaccacgactgta
aacatagggtccatatccacagcagatggctcagccctggtgaaggttggaaacacgaca
gtcatctgtggcatcaaggcggagctgacgaccccggcagtggaggcacctggtaaaggc
tacatagtgcccaacgtggacctgcctccgctgtgttcctcccggtttcggcccggcccg
ccgggagaacaggcacaggctgccagccagtttgtagccgatgtaattgaaagctctgag
ttgatgcaaacggaggacttgtgcatcgaaagaggaaagctctgctgggtgctctactgt
gacatgatgtgtctggattacgatgggaacgtgctggacgcttgcatcattgccctgctg
gctgccctgaagaacacacagctcccagaggtcaccatcagcaaagagacgagtttacca
gaggttaactttgaagagagacgagggctgaatattcgcaaacatccagtcggcacctca
ttttgcgtctttgatgactccatactgatcatcgaccccacagctgatgaggagagtctg
tcaaccgctcacctcactgtggtgacagatgatgaagatcgactctgcattgtacataaa
ccaggtgggacaccgctgtcgggagagaagcttcaggagtgcatcaacagagccacaacg
agacagagagagatccaaaaactcattgacaaagtcgtgcgcagtgtgaaggcagcaaaa
taa
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