Pungitius pungitius (ninespine stickleback): 119216243
Help
Entry
119216243 CDS
T07626
Symbol
farsb
Name
(RefSeq) phenylalanine--tRNA ligase beta subunit
KO
K01890
phenylalanyl-tRNA synthetase beta chain [EC:
6.1.1.20
]
Organism
ppug
Pungitius pungitius (ninespine stickleback)
Pathway
ppug00970
Aminoacyl-tRNA biosynthesis
Brite
KEGG Orthology (KO) [BR:
ppug00001
]
09120 Genetic Information Processing
09122 Translation
00970 Aminoacyl-tRNA biosynthesis
119216243 (farsb)
09180 Brite Hierarchies
09181 Protein families: metabolism
01007 Amino acid related enzymes [BR:
ppug01007
]
119216243 (farsb)
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
ppug03016
]
119216243 (farsb)
Enzymes [BR:
ppug01000
]
6. Ligases
6.1 Forming carbon-oxygen bonds
6.1.1 Ligases forming aminoacyl-tRNA and related compounds
6.1.1.20 phenylalanine---tRNA ligase
119216243 (farsb)
Amino acid related enzymes [BR:
ppug01007
]
Aminoacyl-tRNA synthetase
Class II (U)
119216243 (farsb)
Transfer RNA biogenesis [BR:
ppug03016
]
Eukaryotic type
Aminoacyl-tRNA synthetases (AARSs)
Other AARSs
119216243 (farsb)
Prokaryotic type
119216243 (farsb)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
tRNA_synthFbeta
PhetRS_B1
EF1_GNE
B5
B3_4
Arc1p_N_like
EAD7
Motif
Other DBs
NCBI-GeneID:
119216243
NCBI-ProteinID:
XP_037324785
LinkDB
All DBs
Position
3:2200456..2208410
Genome browser
AA seq
823 aa
AA seq
DB search
MPTVGVKRDLLFTALGRTYTDEEFDELCFEYGLELDEITSEKEIISREQGGSKASGASDV
ILYKIDVPANRYDLLCLEGLVRGLQVFMNKMEAPRYRRVRPVSGGPQQLIITKETAAVRP
HAVAAVLRNITFTQERYDSFIELQDKLHQNVCRKRSLVAIGTHDLDTICGPFIYTAKPPG
DISFKPLNQTKEYTATQLMSLYKTDSHLKHFLHIIEDKPVYPVIYDSNGVVLSMPPIING
DHSKITLQTKNVFIECTATDVTKAKIVLDMMVTMFSEYCSQPFTVEEAEVVYPDGKTCKY
PELAYRKEKLSSEFINRKVGINESTETLARLLTKMCLRSEVTGVGDEIEVEIPPTRSDVI
HACDIMEDAAMAFGFNNIPYTTPLTYTVAHQLPVNKLTELLRQELAAAGFTEALTFALCS
KEDIADKLGKKISETRAVHIANPKTAEFQVARTTLLPGLLKTIAANRKMPLPLKLFEISD
VVLKDETKDVGARNSRRFCAVYYNKSPGFEVIHGLLDRTMQLLEEKSARGDGYHIQAAED
STFFPGRCAEIFVRGTSVGRLGVLHPDVVARFELTMPCSALEMDVEPFLGHSVEVQLTHD
VPTQEAAAHGASSSSPPPPASTRTAFGDVSAAAGLKALDDFLADKSYVEGYAASQADVAL
FDAIPAAPAPGFCHLARWYSHIKSFHGERDRLPLAKTQFVLAAEDDLDLFGSDDEAEEQR
LAQYAARKSKKPAPLAKSSILLDVKPWDDETDLAQLEALVRGVAMDGLLWGRSQLVAVGY
GIKKLQIGCVVEDDKVGTDLLEEAITAFSDHVQSVDVASFNKI
NT seq
2472 nt
NT seq
+upstream
nt +downstream
nt
atgccgactgttggtgtaaaacgtgatcttctcttcactgctttaggcagaacatacacg
gacgaggagtttgacgagctgtgctttgaatatgggctggagctggatgaaattacctcg
gagaaggagataatcagccgggagcaaggcggctccaaggcctcgggggcgtctgacgtc
atcctgtacaagatcgacgtaccagctaaccgctatgacctgctgtgtctggaggggctc
gtccgcggcctgcaggtcttcatgaacaagatggaggcacctcgctacagacgcgttcgc
ccggtcagcggggggccccagcagctgattattaccaaggagacggcggcggtgcgacca
catgccgtggccgcagtgttgaggaacattaccttcacacaggagcgctacgacagcttc
atcgagctgcaggacaaactccaccaaaacgtctgcaggaagaggagcctggtggccatc
ggcactcatgacctggacaccatctgcggccccttcatctacacggccaaacctccagga
gacatcagcttcaagcccctgaaccagaccaaagagtacaccgccacgcagctcatgagc
ctctacaagacagacagccacctgaagcatttccttcacatcatcgaggacaagcccgtg
tacccggtcatctacgacagcaacggcgtcgtcctgtccatgccgcccatcatcaacggt
gaccattcaaaaatcaccctgcagacgaagaacgtcttcatcgagtgcacggccacagac
gtgacgaaggcaaagatcgtgttggacatgatggtgaccatgttcagcgagtattgctcg
cagcctttcacggtggaggaggctgaggtggtgtatccagatggcaagacctgcaaatat
ccagagctggcttacaggaaggagaagttgtccagcgagttcatcaacaggaaagttggc
atcaacgagtcgactgagacgctcgcccggctgctgaccaagatgtgcctccgctccgag
gtcacgggggtcggcgacgagatcgaagtcgagatcccgcccacgcgctccgacgtcatc
cacgcctgtgacatcatggaggacgccgccatggccttcggattcaacaacatcccgtac
accacgccgctcacctacaccgtcgcacaccagctcccggtgaataagctgacggagctg
ctgcggcaggaactcgccgctgcaggattcacggaggctctcacctttgccctgtgttct
aaagaagatatagcagacaagctggggaagaagatctcagagaccagggcggttcacatc
gccaaccccaagacagccgagttccaggtggcgcgcaccaccttgctgcccggcctgctg
aaaaccatagcagcaaacaggaagatgccccttcccctcaagctgttcgagatatccgac
gtggtgctgaaggacgagaccaaagatgtcggggcgaggaacagccggcgtttctgcgcc
gtttactacaacaagagcccgggcttcgaggtgatccacggcctgctggaccggaccatg
cagctgctggaggagaagtcggcccgcggggacgggtaccacatccaggccgccgaggat
tccacctttttccccggtcgctgcgcggagatcttcgtccgcgggacgagcgtcgggcgc
ctcggcgtcctccaccccgacgtggtcgcccgcttcgagctgacgatgccctgctccgcc
ctggagatggacgtggagcccttccttggccacagcgtcgaagtccagctcacacacgac
gtccccacgcaggaagccgccgcgcacggggcctcctcctcctcgccccccccgccggct
tccacgcggaccgcgttcggggacgtgagcgcggcggccggcctcaaggcgctcgacgac
ttcctggcggacaagagctacgtcgagggctacgcggcgtcccaggcggacgtggcgttg
ttcgacgccatccccgccgcccccgcccccggcttctgccacctggcgcgctggtactcc
cacatcaagtccttccacggggagagagaccgcctcccgttggccaagacccagttcgtc
ctggcggcggaggacgacttggacctgttcggttcggacgacgaggccgaggagcagcgg
ctcgcccagtacgccgccaggaagtccaagaagccggcgccgctcgccaagtcctccatc
ctgctggacgtcaagccatgggacgacgagacggacctggcccagctggaggcgctcgtc
cgcggcgtggccatggacgggctgctgtgggggcggtcccagctggtggcggtgggctac
ggcatcaagaagctccagatcggctgcgtggtggaggacgacaaagtgggcacggacctg
ctggaggaggccatcaccgccttctcggaccacgttcagtccgtggacgtggcgtccttc
aacaagatctga
DBGET
integrated database retrieval system
