Pungitius pungitius (ninespine stickleback): 119216257
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Entry
119216257 CDS
T07626
Symbol
frem1b
Name
(RefSeq) FRAS1-related extracellular matrix protein 1b
KO
K23380
FRAS1-related extracelluar matrix protein 1/2
Organism
ppug
Pungitius pungitius (ninespine stickleback)
Pathway
ppug04512
ECM-receptor interaction
Brite
KEGG Orthology (KO) [BR:
ppug00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
119216257 (frem1b)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04091 Lectins [BR:
ppug04091
]
119216257 (frem1b)
Lectins [BR:
ppug04091
]
C-Type lectins
Lecticans
119216257 (frem1b)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Cadherin_3
Frem_N
Calx-beta
Motif
Other DBs
NCBI-GeneID:
119216257
NCBI-ProteinID:
XP_062419236
LinkDB
All DBs
Position
7:8484815..8526336
Genome browser
AA seq
2151 aa
AA seq
DB search
MAAVSAPGLLLLLAATTSVCGGRLVAVNSGVEVSRGLSVVVTQRELKISTPPTVDCKVEV
VMNEPVTQRVGKLTPQVFDCSFLEGEIKYVHDGSPLLDEDTVMLRVYRFAASDTLVETVV
LSVRVVDTGSGVVELGSSPLVVPLFYGLSNAIDSSVVNIRTTADMACIVRLMTSDTRVPA
LGRLVTEGDSAQRKGRETPALCPGNRPCRHDTKEVSFLKISCQDFLSSGLKYQHLRPPSP
EIDYIPIRVELRQQGTRALMEAQSVWLPVLIHGAMQNQPPHAAFMASFIMEVDQFILTPL
TTASLDANDHETAQERLVFNVSAPPDEGYITHLDDHTKPVTSFTWLDLHEMKVAYQPPNS
SQSHRRNYEVEFQAIDSSYMTSPPIVVHVSIRVTETNAPRVSWNMGLDLLEGQSRPITWE
ELQIVDNDNIDAVYLVAVDGPLHGRLSVRGGKAFMFRVRDLREGAVVYHHSDSDSTRDHV
VFRISDGRHSIRHKFPINVLPKDDSPPFLINNVAVEVREGGAVRLEEYTLLASDLDSSDD
YILYRVGSGPRAGQLVRKTSPYETGDPVDSFLQRDLIQGQIYYQHSGEEMFEDSFDFILS
DSHQPPNLSQTYTVVVHVFPVKDQLPVEVSDSIRSLTVKETEVVHITRAHLHFTDREHPD
TDLTYVITQPCFSPLHPGLMDAGRLFYTDSANSMKRDHMVPVLKSFTQHAVHHLKVAFMP
PVEDIGPEPLFVQFVFSVTDHHGGAVSGLLFNITVTPVDDQAPEAFTNTLRVEEGGGAFV
TEEHLLVKDRDSREESLRVEVRRMAGHGRLELQGRALQQGDGFSLQDLRGLRLRYLHDDS
ETTEDEVHLKVTDGLNSVDVVLPVQVLPMNDEPPQLGGGLRGGLSCEEARQVQLTVDYLS
ATDRDSDDSRLTYMLARSPGRGELQRAGLTVDKFSQQDLLQGHIYYVHTGGEIGPEAVLE
TVTLIISDGEAGGTDRCCHGDAPPVPLHGTLPVYDLNITILPVNNKVPSVTLGESMLVVN
EGSFACLCGGVLGASDHDSPDDQLTFHLETPPLHGFLENTLPTPGSEKSNAGVPVESFRL
VHLTAGFINYVQSESKGAEPNVDRLSISVSDGLHHSAHVLFYIIISPTNDETPTLLLANF
TVNEGGVRELTPSILGGFDLDAPPDILTFTVVQPPAHGSLINGIYGTEMGRYKEMSPELL
QRSLPVTSFTLQELRQGMKIVYMHDDTETLKDAVSLKLTDGVHTVQGTARVTVLPVNDEK
PRLLKNAGLEVDAGERRVISSVALEAQDQDTPPNQVHYILNAAPRFGRLQLETESGWTEL
SAAQNFTQGDVEMNRLWYAHTGADAAGFKGHDSFRFTLSDLDNESPPQSFFISIHTVQKG
DLVLLSKAVRLMEGQRVVLNTDILLASDSAGRPQELVYAVSVPPRHGLVHAVQQPGVPLT
AFTQLDVAAHRVAYTHDNSHHAEADSFGFVVTNGDSSHSGALHFSIEHGDRIPPTLQHNT
GLRLQDGATETITSDQLQLTDPDTAPANLSYVIRQLPRHGRLLLRGVPMSPPLTLAQADV
DERNLAYQHDPGSQADIDRFYFLPTDSHNRGYLEFGQLRKEPAVFNIQVNRVDRLPPSLT
TRRSPTEVVELASGRYGIFITSKHLQASDPDSPAPELEFSISRPPHFGYLENALTGAYIK
GRFTQRDVDQRAVVFVLPADMEVTADSFLFRLTDPAGNTILPEILELSWSRLELSATCYR
TCETSGTLQIQVQRSGQSVDPAYVAIQVEEGSAKPGRDFTHSTAGLIQFDPGVSVKTWNI
YLIDDGLEENHETFTVTLKTPKNAVLGQRTSASVEIIDPRGGRCDQEDLMVEQDRTQRPP
LPPPPPPPTDPPGPKEEDIIADIEAELLWENRPPPPRGDVPNRSLYPGYGEEEPQDQAAP
SDYNHDRQRPGAGTGSTGSTGDRVPHGGLKVHQSGESRTEEKVWMFHSLTRLSVEELKPS
DAKWSWSPHGRPLLDLRVEGSPQMDPPEPRHQPEPRQRKTGKAISSSCADGWTHYRRRCY
IAGSSVASWARAHRSCSLLFNSSLTSVRSRRDMTWLWKFAGRKPFWIGPSGGPGRRMWDD
GRTPSFYMWRGSESGVGSDCVLVEKPRSWISTGCSPETLHTFVCSSPAHTH
NT seq
6456 nt
NT seq
+upstream
nt +downstream
nt
atggctgccgtcagtgctccagggttgctgctgttgctggcggcgaccacgtctgtctgc
ggcgggagactggtggcagtgaactcgggcgtggaggtctcaagaggtctgtcagttgtc
gtcacgcagagggagctgaagatcagcacgccccccaccgtagactgtaaggtggaggtg
gtgatgaacgagcccgtcactcagagggtggggaaactgacccctcaggtgtttgactgc
agcttcctggagggcgaaataaaatacgtccacgatggaagtcctctgctggacgaggac
acagtgatgctgagggtgtacaggtttgcggcctcggacacgctggtggagacggtggtc
ctgtcggtgagggtggtggacacgggctccggcgtggtggagctgggcagctctccgctc
gtggtgcccctgttctatggtttatccaacgccatcgacagctccgtcgtgaacatccgc
accacggcagacatggcctgcatcgtaaggctgatgaccagcgacaccagggtcccggct
ctgggtcggctggtcacagagggggattccgctcagaggaagggcagagagacaccggcg
ctctgtcccgggaacagaccctgtcgccacgacaccaaagaagttagtttcctaaaaatc
agctgccaggacttcctgagctccggtctgaaataccagcacctccgccctccgtcaccg
gagatcgactacatccccatccgggtggagctgaggcagcagggcaccagggctctgatg
gaggcacagtcggtgtggctgccggttctgatccatggtgcaatgcagaaccagcccccc
catgccgccttcatggcctccttcatcatggaggtggaccagttcatcctcaccccgctc
accacagcctccctggacgccaatgaccacgagacggcgcaggagaggctggtcttcaac
gtgtccgccccgcccgacgagggctacatcacccacctggacgaccacacaaagcctgtc
acgtccttcacatggctggacctccacgagatgaaggtggcctaccagccgcccaacagc
agccaatcgcaccgcaggaactacgaggtggagttccaggctatagatagttcctacatg
accagcccacccattgtggtacacgtctccatcagggtgacggaaacaaacgcccccaga
gtctcctggaacatgggtttggatctgctagaaggtcagtctcgaccaatcacatgggag
gagctccagatagtggacaacgacaatatcgatgcagtctatctggtggctgtggacggg
cctcttcatggacgcctcagtgtcagaggcgggaaggcgttcatgttccgcgtgcgggac
ctgcgggagggcgcggtggtctaccaccactccgacagcgacagcacgcgcgaccacgtc
gtcttccgcatcagcgacggccgccacagcatccgccacaagttccccatcaacgtgctg
cccaaggacgactccccgccattcctcatcaacaacgtggcggtggaggtgcgcgagggg
ggcgccgtgcggctggaggagtacacgctgctggcctccgacctggactccagcgatgac
tacatcctctaccgggtgggttcagggccccgggccggtcagctggtgcggaagacctct
ccctacgagacaggagatcccgtggacagtttcctccagagagatctgatccagggtcag
atctactaccagcactcgggagaggagatgtttgaggacagtttcgacttcattctgtct
gacagccaccagccgcccaacctgtcccagacatatacggtggtggtccacgttttcccg
gtgaaggaccagctgccagtggaggtctctgacagcatacgctctctgaccgtgaaagag
acggaggtggttcacatcactcgggctcacctccactttaccgaccgagagcatccagac
accgacttgacctacgtcatcacgcagccctgcttcagcccgttgcatcctgggctcatg
gacgcaggccgtctgttctacactgacagcgccaacagcatgaagagagaccacatggtt
ccagtgttaaagtccttcacacagcatgcagtgcaccacttgaaagtggccttcatgcct
ccggtggaggacatcggtccggagccgctgttcgtgcagtttgtcttctccgtcactgac
caccacggaggagccgtttccggcctcctcttcaacatcaccgtcacccctgtggacgac
caggcaccagaggcctttaccaacacgctgcgggtggaggagggtggaggggctttcgtg
actgaggagcacctgctggttaaggaccgagacagcagggaggagtccctgagggtggag
gtccgcaggatggctggacacggccggctggagctgcagggtcgagccctgcagcaggga
gacggcttctccctgcaggacctgagaggactccgactcaggtatctccatgacgactcg
gagaccacagaggatgaagtccatctgaaagtgacggacggtctgaactcggtagacgtt
gtccttccggtacaggtcctgccgatgaacgatgaacctccccagctgggtggagggctg
cgcggggggctgagctgcgaggaggccaggcaggtccagttaacggtggactacctgtca
gctacagaccgagacagcgacgactccagactgacctacatgctggcccggagtccaggc
aggggggagctgcagagagcaggactgaccgtggacaagttctcccagcaggacctgctg
cagggacacatttactacgtgcacacaggaggagagattggacccgaggctgtactggaa
accgtcaccctcatcatctctgacggcgaggccggagggacagatagatgttgccatgga
gacgccccgcccgtgcctctccatggcacacttcctgtctacgacctaaacatcaccatt
ctccctgtcaacaacaaagtaccctccgttactctgggtgagtccatgttggtggtgaac
gagggctccttcgcctgtctgtgtgggggggtccttggggcctcagaccatgacagcccc
gacgaccagctgacctttcacctggagactcctcctctgcacggcttcctggagaacacg
ctgccgacgcctggctccgagaagagcaacgcgggagttccagtcgaatccttcaggctc
gttcacctaactgcgggtttcattaactatgtccaatcggagagcaaaggggcagagcca
aatgttgaccgactctccatcagtgtgagtgacgggctgcaccactccgcccatgtcctc
ttctacatcatcatcagtccgaccaacgatgagacgccaaccctgctgctcgccaacttc
acagtgaatgagggcggggtgagggagctgactccatcaattctgggcggttttgacctg
gacgcccccccggacatcctgactttcacggtggtgcagccgccggctcacggcagcctg
atcaacggcatctacggcaccgagatgggccgctacaaggagatgtcgcccgagctcctg
cagagaagcctccccgtcacctccttcaccctacaggagcttcgacaaggcatgaagatc
gtgtacatgcacgatgacacggaaaccctgaaggacgccgtgtctctgaagctgacagat
ggcgtccacacagtccaggggacggcccgggtcaccgtgctgccggtcaacgatgagaag
ccacggctgctcaagaacgcggggttggaggtggacgctggcgagcgcagggtgatttcc
agtgtggccctggaggcccaggaccaggacacccctccaaaccaggtgcactacattctc
aacgccgcgccgcgcttcggcaggctgcagcttgagacggagtcgggctggaccgagctg
tcagccgcacaaaacttcactcagggcgacgtggagatgaaccgcctgtggtacgctcac
actggagccgatgccgccgggttcaaaggtcacgacagcttccgcttcaccctcagcgac
ctggacaacgagagtcccccgcagagcttcttcatctccatccacactgtgcagaaaggt
gacttagtgctgctgagcaaggcagtgcgtctgatggaggggcagcgcgtcgtcctcaac
accgacatcctgctggcgtcagactcggccgggcgtccgcaggagctggtctatgcggtg
tccgtcccgccgcggcacggcctcgtgcacgctgtccagcagccgggcgtcccgctcact
gccttcacgcagctggacgtcgccgcccatcgggtggcttacacccacgacaacagccac
cacgcagaggccgactccttcggttttgtcgtcaccaacggggactcgtcccacagcgga
gcccttcacttcagcatcgaacacggcgaccgcatcccgccgactctgcagcacaacacg
ggcctccggctgcaggacggggccacggagaccatcacgtcggaccaattgcagctcacc
gaccccgacaccgcccccgctaacctgagctacgtcatcaggcagctgccacgccacggc
cgactgctactgagaggggtcccgatgtccccgccgctgacgctcgcccaggctgacgtg
gacgagcgtaacctggcttaccaacacgacccgggcagccaggcggacattgacaggttc
tacttcctgccgaccgacagccacaacagaggctacctagagtttggacagctgagaaaa
gagcccgctgtcttcaacattcaggtgaatcgcgtggacaggttaccccccagtctgacc
accaggcggagtcccaccgaggtggtggagcttgcgagtgggcgctacggcatcttcatc
acctccaaacacctgcaggcctccgaccccgacagccccgcgccggagctggagttctcc
atctccaggccgccgcactttggctacctggagaacgccctcacgggagcttacatcaaa
ggtcgcttcacccagcgggacgtggaccagcgcgccgtggtgttcgtcctcccggccgac
atggaggtgacggccgatagcttcctgttccgcctcaccgacccggcgggaaacacaata
ctgccagaaatactggagctgtcctggtcgcggttggagctgtctgccacttgctataga
acctgcgagacctcggggacgcttcagatccaggtccaacgcagcgggcagagcgtcgac
ccggcgtacgtcgccatccaggtggaggagggctcggccaaacccggcagggacttcact
cacagcacagccggtctcatccagttcgaccccggagtcagtgtgaaaacttggaacatt
tacttgatagatgacggtctggaggaaaaccacgagaccttcactgtcaccctgaaaaca
ccaaaaaacgccgtcctgggacagaggacctccgctagcgtggaaatcatcgaccccaga
ggaggacggtgcgaccaagaagacctgatggtggaacaggatagaacgcaacgcccacct
ctccctcctcctcctcctccccccacggaccctcccggaccgaaggaggaggacatcatc
gccgacatcgaagcagagctgctgtgggagaaccggcctccccctccccgaggagacgtc
ccgaaccgcagcctctacccgggctacggagaggaggaaccgcaggaccaggcggccccc
agtgactacaaccacgacaggcagcggccaggggcgggaaccgggagcaccgggagcacc
ggagacagggtcccacatggaggactgaaggtccatcagtccggagagagtaggactgaa
gagaaagtttggatgtttcatagtctgactcgactctcggtggaggagctgaagccgagt
gacgccaagtggagctggtcgcctcacggtcgccctctgctggaccttcgggtcgaaggg
tctcctcagatggatcctccggagcccaggcaccaaccggagccccgccagcgcaagacg
gggaaggcgatcagcagctcctgtgctgacggctggactcactacaggagacgctgctac
atagccggctcgtcggtggccagctgggcccgcgcccacaggagctgctctctgctgttt
aacagcagcctgaccagcgtgcggtccagaagagacatgacctggctgtggaagtttgca
ggaaggaagccattttggatcggtccgtccgggggtccaggtcgccggatgtgggatgac
ggtcggacgccgtccttctacatgtggagggggtctgagtctggagtcgggtcggactgc
gtgctagttgaaaagcccagaagctggatctccacaggctgctcccccgaaactctacac
acatttgtctgttcatcaccggctcacactcactga
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