Pungitius pungitius (ninespine stickleback): 119216265
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Entry
119216265 CDS
T07626
Symbol
upf1
Name
(RefSeq) regulator of nonsense transcripts 1
KO
K14326
regulator of nonsense transcripts 1 [EC:
5.6.2.5
5.6.2.3
]
Organism
ppug
Pungitius pungitius (ninespine stickleback)
Pathway
ppug03013
Nucleocytoplasmic transport
ppug03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
ppug00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
119216265 (upf1)
03015 mRNA surveillance pathway
119216265 (upf1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ppug03019
]
119216265 (upf1)
Enzymes [BR:
ppug01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
119216265 (upf1)
5.6.2.5 RNA 5'-3' helicase
119216265 (upf1)
Messenger RNA biogenesis [BR:
ppug03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
119216265 (upf1)
mRNA cycle factors
Common to processing body (P body) and stress granule
119216265 (upf1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UPF1_Zn_bind
AAA_12
AAA_11
UPF1_1B_dom
AAA_30
AAA_19
ResIII
SLFN-g3_helicase
NPHP3_N
DEAD
AAA_16
Helicase_RecD
nSTAND3
ATPase
UvrD-helicase
SRP54
UvrD_C_2
AAA_22
Motif
Other DBs
NCBI-GeneID:
119216265
NCBI-ProteinID:
XP_037324826
LinkDB
All DBs
Position
7:complement(11839629..11853076)
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AA seq
1102 aa
AA seq
DB search
MSVEAYGPSSQTLTFLDTEETELLGADTQGSEYDFTDFTLPSQTQTQGQTQSQLDNQVNG
PDEGLLNGGVDDSVAKASQLLAELNFEEDEEDTYYTKDLPLHACSYCGIHDPACVVYCNT
SKKWFCNGRGNTSGSHIVNHLVRAKCKEVTLHKDGPLGETVLECYNCGCRNVFLLGFIPA
KADSVVVLLCRQPCASQSSLKDINWDSSQWQPLIQDRCFLSWLVKIPSEQEQLRARQITA
QQINKLEELWKDNPTATLEDLEKPGVDEEPQHVLLRYEDAYQYQNIFGPLVKLEADYDKK
LKESQTQDNITVRWDLGLNKKRIAYFTLPKTDSGDMRLMQGDEICLRYKGDLAPLWKGIG
HVIKVPDNYGDEIAIELRSSVGAPVEIPHNFQVDFVWKSTSFDRMQSALKTFAVDETSVS
GYIYHKLLGHEVEDVTIKCQLPKRFTAQGLPDLNHSQVYAVKTVLQRPLSLIQGPPGTGK
TVTSATVVYHLSRQGNGPVLVCAPSNIAVDQLTEKIDKTGLKVVRLCAKSREAIESPVSF
LALHNQISNMDSMPELQKLQQLKDETGELSSADEKRYRALKRTAERELLMNADVICCTCV
GAGDPRLAKMQFRSILIDESTQATEPECMVPVVLGAKQLILVGDHCQLGPVVMCKKAAKA
GLSQSLFERLVVLGIRPIRLQVQYRMHPALSAFPSNIFYEGSLQNGVTAADRIKKGFDFQ
WPQPDKPMFFYVTQGQEEIASSGTSYLNRTEAANVEKITTRLLKAGAKPDQIGIITPYEG
QRSYLVQYMQFSGSLHTKLYQQVEIASVDAFQGREKDFIILSCVRANEHQGIGFLNDPRR
LNVALTRAKYGVIIVGNPKALSKQPLWNNLLNNYKEQKVLVEGPLNNLRESLMQFSKPRK
LVNTINPGGRFMSTAMYDAREALIPGSAYDRSNTAGRQSNMYFQTHDQIGMIGAGPGHMS
AMNIPIPFNLVMPPMPPPSYLGQTNGPVAGRGAMKGKPGRGGRQRARGSAHQGASQGNGP
NSQASQDGASQPFSQGPLTQGYISMSQPSQMSQPGLSQAELSQDSYLGDEFKSQIDVALS
QDSTYQGERAYQHGGVTGLSQY
NT seq
3309 nt
NT seq
+upstream
nt +downstream
nt
atgagtgtggaggcgtacgggccgagctcccagaccctcaccttcctagacaccgaggaa
acggagttgctcggagcggacacccagggctccgagtacgacttcaccgacttcaccctt
cccagccagacgcaaactcaagggcagacccaaagccagctggacaaccaggtaaatggt
cctgatgagggtcttctcaacggcggtgtggatgactccgtggccaaagccagccagctg
ttggccgagctcaactttgaggaggacgaggaagacacgtactacactaaagacctgcca
ctgcacgcgtgcagctactgtggtattcatgatccagcatgtgttgtttactgcaatacc
agcaaaaagtggttctgcaatggacgtggcaacacatctggcagtcacattgtgaaccac
ttggtgagagccaaatgcaaagaggtaacactgcataaagatgggccgctgggcgagaca
gtgctggagtgttacaactgtggttgtcgcaacgtcttcctcctgggcttcatcccggct
aaggccgattccgtcgtggtactactctgccgacagccctgtgccagccagagtagcctc
aaggatatcaactgggacagctcgcagtggcagccactaatccaggaccgctgctttctg
tcctggctggtgaagatcccatcggagcaggagcagcttcgagcccgtcagattactgcc
cagcagatcaacaagttggaggagctgtggaaggacaaccctactgccaccttggaagac
ctggagaaacctggagtggacgaggagccccagcatgtactgctgcgctatgaggatgcc
taccagtaccaaaacatctttggccctttggtcaaactggaggccgactacgacaagaag
cttaaggagtcccagacccaagacaatataacagtcaggtgggacctggggctgaataaa
aagcggattgcctattttacactgcccaagacggattcaggtgatatgcggctcatgcag
ggggatgagatctgcctgcggtacaaaggagacctggcccctctgtggaaaggcattggt
catgtcatcaaagtcccggacaactatggggatgaaattgccattgagctgcgtagcagt
gttggagcacctgtggaaatccctcacaacttccaggtcgactttgtgtggaagtccacg
tcttttgaccggatgcagagcgccctgaagacttttgcggtggacgagacctcagtgtct
ggttacatttaccataaactgttgggccacgaagttgaggatgtcaccatcaagtgccag
ctgccgaagcgtttcactgcgcaaggcctgcccgacctcaatcactcacaggtgtacgct
gtaaagacggtgctgcagaggcctctgagtctgatccaaggtccccctggcactggaaag
actgtcacctcggcaactgtcgtctaccacctgtcccgacaaggcaacggaccagttctg
gtgtgtgctcccagtaacattgcagtggatcagttgacggagaagattgacaagacagga
ctgaaggtcgtcaggctttgtgctaagagccgggaggccatcgagtccccggtatccttt
ctagctctgcacaaccagatcagcaacatggacagtatgcccgagcttcagaagctacag
cagctgaaggatgagactggcgagctgtcctctgctgatgagaagcgctacagggctttg
aagcgcacagctgagagggagctgctcatgaatgcagacgttatctgttgtacctgcgtc
ggagctggagatcctcgtctggctaagatgcagttccgctccatcctgattgacgaaagc
acccaggccacggagccagagtgcatggtgcctgtggtgcttggagccaagcagctaatt
ctggtgggtgatcactgccagctgggtcctgtggtgatgtgtaagaaagcagccaaggca
ggtctctcccagtccctgtttgagcgcttggtggttctggggatccggcccatccgcctc
caggtccagtaccgtatgcacccggctcttagtgccttcccctccaacatcttctacgag
ggttccctgcagaacggcgtcactgcagctgaccgcatcaagaaaggctttgacttccag
tggccgcagccggacaagcccatgttcttctacgtgactcagggtcaggaggagatagcc
agctccggaacctcctaccttaacaggactgaggctgcaaacgtggagaagatcaccacc
aggctgctgaaggctggagccaaacctgaccaaatcggaatcatcaccccgtacgagggc
cagcgctcctacctggtccagtacatgcagttcagcggctccctgcacaccaaactctat
cagcaagtggaaattgccagcgtggatgcctttcagggcagagagaaggacttcatcatc
ctttcttgtgtccgtgccaatgagcaccagggaatcggctttctgaacgacccgcgtcgc
ctcaacgtggcgctgacccgagccaagtacggtgtgatcatcgtgggaaaccccaaggct
ctctccaagcaaccgctgtggaacaacctgctgaacaactacaaggaacagaaggttctg
gtggaggggcccctgaacaacctgagggagagcctcatgcagttcagcaagccccgcaag
ctggtcaacaccatcaaccctgggggacgtttcatgagcactgcaatgtacgatgcccgt
gaggccctcatccccggctctgcttacgaccgcagcaatactgccggacgtcagtccaac
atgtactttcaaactcacgaccagattgggatgattggggcgggccccggtcacatgtct
gctatgaatattcccattcccttcaaccttgtgatgccaccaatgcctccgcccagctac
ctgggtcagaccaacggccctgttgcaggtcgtggagctatgaagggcaagcctggccgt
ggcgggaggcagcgggcccgaggttcggcacaccagggtgccagtcagggtaatggaccc
aacagccaggccagccaggacggggcctcccagcccttctcccaggggccgctgacacag
ggctacatctccatgagccagccctcccagatgagccagcctggcctctctcaggcagag
ctgtcccaggacagctacctgggcgatgagttcaagtcccaaatcgacgtggctttgtcc
caggactcaacttaccagggtgaacgtgcataccagcatggtggcgtgactggactgtca
cagtactaa
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integrated database retrieval system
