Pungitius pungitius (ninespine stickleback): 119216397
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Entry
119216397 CDS
T07626
Name
(RefSeq) protocadherin-16-like
KO
K16507
protocadherin-16/23
Organism
ppug
Pungitius pungitius (ninespine stickleback)
Brite
KEGG Orthology (KO) [BR:
ppug00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
ppug04515
]
119216397
Cell adhesion molecules [BR:
ppug04515
]
Cadherins
Cadherin related
119216397
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Cadherin
Cadherin_CELSR2_9th
Fibulin_C
RET_CLD1
Big_9
CADH_Y-type_LIR
Orf78
NOMO_3rd
FeoB_associated
Motif
Other DBs
NCBI-GeneID:
119216397
NCBI-ProteinID:
XP_037325094
LinkDB
All DBs
Position
3:complement(13903891..13972521)
Genome browser
AA seq
3282 aa
AA seq
DB search
MKTASKGFAKSTMDPSHRCGWWDRRIVLMVYVALELVTIHLPVVQGTLELQLDEEQPAGT
IVGDISAGLPPGTTASSYFISDHEGTGVGSDLDIDESTGIIKTAKVLDRELRDRYNFIAV
TMTGMTVEVTIKVNDINDHVPTFPRKRAIFKIPEQTAIGTRFPLEPAVDADKGQLTTQGY
VIKDGNVGQAFTLETRRGSNEVLYVDLAVNAILDREKRSTYTLSLEAFDGGSPKRTDQMT
LDITVQDINDNAPIFNQSRYHAIISENLQPGSNILQVFATDVDEGSNGMVLYEINRRQSD
PDRYFVIDSRTGIIALNKPLDFEMRRVHELVVQAQDNATQPEVTNAFVTIHVRDYNDNQP
TMTIIFLSEDGSPRVSEGAQPGQYVARISVTDPDYGEYANVNVSLEGGDGKFALTTKDSI
IYLMCVDQILDREERDSYGLRVTATDSGTPPLRAESSFIIQVVDINDNPPKFDQPVYRQV
IPEVVFPGSFVLQVTARDKDQGPNGDIQYSILDDRGSDSNWFSIDSITGIITTLSQLDYE
NNPNPSITVVATDGGKPPLSSTAVVNVVLQDMNDNEPVFERNFYNVTIKENTAPWTCILE
VRATDADGGSFGSITYSLGSGVSSVAPSQFTIGKESGQICTSGSLDRDQGPVSFDFTVTA
VDGGGLSSVAYVKVDLADINDNRPAFYPVSYAVSLSTQSAPGTSVVRVTAYDPDSGENGR
ITYKTVAGGGSPYFTLNKETGVISLSRSVYGRANSVIPMEISAQDGGGLVALVSARVNIS
VVAGLVAPPVFQQTQYHFSVSEDVLRGTVVGFVQASTKIGTSRDLSYTISSGDPGGYFTV
DPDTGAIRTSVPLDHEDQSALNLEVQARSGNPPAFGHTRVHITIADINDNPPVFLPSSSE
SLLLPEHTEMGTVVYRVQAEDRDSGVNGKLTFDLSSPSGIQRTFSIERSNGDIRLVGSLN
YEIAPRYDLQVIGKDGGVPQLSATFVLVVHVQAENDQGPVFDTLTYRVELKEGTPINTRF
LQVRALNRETSGSGYLSPLAYRLRPDGDAAGFGIAADSGWLFVKNSLDREVKDMYLITVL
ASQGVGQLKKTGSATVRISVTDENDNSPRLTQERVFMAARENLPAGTGFGHVTASDRDSG
PNGRLSYQFLRPDRHFQINSHTGEISTRTTLDREQQSSYQLVMVVQDGGSPPRSTTGTAF
ITVLDENDNDPAFIHSQAGKHLIIQVTEGQSPGVLLGTLQAKDPDEGENGTVFYTLSGPR
AERFSLNPNTGELRSSSPLSHSERAEYTLTVTATDRGLSPRSTSCPFTIQVLSINRPTSQ
TNSFSMSFNSVEEAKPGSVIGSVHIHERETAEEGEVTYTVVGGTDRDGTFVVDRLTGDVY
LARPLDYERDARYSLEIEVDNLSEAHPSSTLVHLDINVEDSNDHTPQFPEDPITIVISEN
MVPGSSVHTFQATDKDGSGPNSELTYSIFHQWPNTPGLLTLDPSTGVLSLGQELDHEVAS
NLILVVKATDSAHDASQRRWGSVTARVYVTDENDNPPVFSSPTAVSVMEDQPVGFVALYV
MARDADQGENGRVTYSIQSGNTGGTFGLNTNTGSLSIFKPLDREEQDVFNLTITAEDHGT
PQHSSSQLLCVHVIDVNDEVPRFEESQYEAQVSENQPPGTSVLTVSASDLDQGTNGQVTY
GGISEEGFSINPGTGVITTSKWLDRELQEYYTFTVYAKDEGLPPNYAKATVRIRVLDKND
NAPFFGRLYYRIEVPENLETLPLFTLKATDKDAGNSGVIHYKITDGDPLGDFLMDGQLGV
LSTSRSLDRERRAGYTLTVTAQDLGHPPLSSSATVEVTVLDINDHSPQFQSSGYTADVSE
DVPIGSLVLEVKAIDMDQGPNSQVLYFLSSGSNSMFIVDQNTGRIITAAPLDRERTASYT
FGVCATDSSPGNPRNSTVQVTVHIQDVNDNAPYFIQDPLIVNISASTVSSRRVLATMRAE
DKDFGANGSVFYRFANPVRGFTINSLTGDIQATERLQALTQSQRTLIIQAMDQGNPAQSS
LGVVIVYIKEQSYRGIRFSRTARDVSLQENAAKGTVVTQTEAQYPDGSQTGISYSFFSGN
RMQSFGINSITGEIWVQRSEELDFEETPKLRLVVKAETASSSTYMAVNLILQDINDNWPR
FELQNYVAYIREAQGYDFPIIQVSADDLDQGQNGQVTYSIRSSSMSGLFKIDPLTGSITT
AAIMDREIWTETKLVVTATDRGTPRLAGSATLTVIVIDLNDNSPMIPLHREIRVPEDTLM
GTVITQVTGNDVDSGPALSYTLHLDTKIQGMFGIHRYGGGVSLTGLLDYEDRTWYTLTVR
SSDSVHQSEANITVLVDDVNDNAPTFTQDSYQVTVSEHLPAGSPVITVTATDRDSGENGK
ITYRVMSSTRSVFYIDPSNGTLFVNQKTEFDFKNPYILVVIEVRDQGTPSLSSTATVQVQ
VSDVNDNAPIFHQSEYKATVCEDGLPGSTVLTLEAVDGDLSRDNCGFDFAIASGNSGNTF
QIESSVRFLEGLGFQTVGSLILVEELDFEAVASYNLTVVVSDRGIPQRSSSVPVLISVTD
ANDNPPAFARAEYSAMLSEGAAVDTELLHLSATDPDSAPNAEVQYSISSGDETDMFQVDR
WTGALRLQRPLDSERQWAHTIVVTATDGRGHYALATVSIEVKDINDNRPFFPLKLITASI
RENQPQKALVTMLHAIDHDRGVFGQLQYYMLDNPKEARDAFLINQTSGELRTRSTFDFER
ANSFRFVAVAMDAGNYSATVTVQIYVTGEDEYDPVFTSSELSFEVPEGAKKGETIGKLQA
TDEDGGVDGIVLYSLADSSPYFEVNKSTGALSLKMDSYSRHVSRSKRELRLMTLEVMAHS
PLETSRRAVAKVSIDVTHTSFGLTTDMNILLVSIIAVSLGTIVILIVIAVALFFVKLRRR
RKERKSHRKPQVSGTMLHKFEETKIAASEMIYHQALPGYAADQSGSTGAPYTRGGSSDPS
HSSGRGSAEAEAAEDDEIRMINEYPRVSSISSSMQERISARGPDSGIQQDADQLSDVSCE
PSIDWFKGKKLGSVNGTLLSGQLPVYRDEGGGFGGVGRGLSISHPKDYTFPEDGKPAVDG
SLTAVVASDEELRGSYNWDYLLNWCPQFQPLANVFTEIARLKDETTPPHPRKSFYHKAKA
ESRIDPPPLITSVAHPGAKTVPTKPAVGRTFPHLASFRRSPLSAEGSISSVAMSPSFSPS
LSPLAARSPAITPFSVSQGPSASLISTTEHHLEHSEEAELRI
NT seq
9849 nt
NT seq
+upstream
nt +downstream
nt
atgaagacagcttccaagggttttgcaaagtctacaatggacccttcgcaccgctgcggt
tggtgggacagaaggattgtgctaatggtgtatgtggccttggagcttgtaacaattcat
ctgcctgttgtccaagggactcttgaactgcagctagatgaggaacagcccgcaggcaca
attgtaggtgacattagtgcgggacttcctcctggcacaacagcatcctcttacttcatc
tcagaccacgagggaaccggtgtggggagtgatttggacatagatgagagcacaggcatt
attaaaaccgccaaagttctggacagggaactaagggacagatacaacttcattgcagtc
accatgacaggtatgaccgtggaggtgaccatcaaggtgaatgacataaatgaccacgtc
ccaacgttcccaagaaaaagggcgatttttaaaatccctgagcagacagccatcggcacc
aggtttcctcttgagccagctgttgatgctgataagggccagcttacaacacagggttac
gttatcaaggatggaaatgttggccaggcattcaccttggagacccggaggggaagcaat
gaggttctttacgtggacttggcggtcaatgccattctggaccgagagaaaagatccacg
tatactttatctctggaggcctttgatggtggttccccgaaaagaactgatcaaatgacg
ttagatattaccgtacaagacattaatgacaacgctccaattttcaaccagagccgctac
cacgccataatatcagagaaccttcagccaggaagcaacatcctgcaggtgtttgctaca
gacgttgatgaagggagcaatgggatggtgctgtatgaaatcaaccggagacaaagtgac
cccgaccgctactttgtcattgactctcgcacaggcatcattgccctcaacaagccgctg
gactttgagatgaggagagtgcacgagctggtggtgcaggcgcaggacaacgctacccag
ccggaggtgaccaatgccttcgtcaccatccacgtcagagactataacgacaaccagccc
accatgaccatcatctttctcagtgaagatggctccccgagagtctccgagggtgcccag
ccaggccagtatgtagccaggatctcagtcactgacccagactatggcgagtacgccaat
gtcaatgtgtcgctagagggaggagatggaaagtttgccttgaccactaaggatagcatc
atctatctgatgtgtgttgatcagattctggaccgggaggagagagacagctacgggctg
agggtgacggcaacagattcaggcactcctcctctcagggcagagtcctcctttatcatc
caggtcgttgatatcaatgacaaccctcctaaattcgaccagccagtgtacaggcaggtg
atccctgaagtggtcttcccagggagctttgttctacaagtgaccgctagagacaaagac
caggggcctaatggggacattcaatacagcatcctagatgaccgtggttctgactccaac
tggttcagcatagactccataacggggattatcaccactctctcccaactggattatgaa
aacaaccccaatcccagtatcactgtggtggctacagatggaggaaaaccacccttgtcc
tccactgctgtggtaaacgttgtgcttcaggatatgaatgacaatgagcctgtttttgag
aggaacttctacaatgtgaccatcaaggagaacacagctccatggacctgcattcttgag
gtgagggcgacggatgcggacggcggctcctttggctccattacctactctcttggctct
ggcgttagcagcgtggctccatctcagttcaccattggcaaggagtctggccagatctgc
accagtggttcacttgacagagatcaagggccagtcagcttcgactttactgtaactgca
gtggatgggggtggactgagctcagtagcctatgtcaaggtagatctggccgacattaac
gataacagacccgccttctacccagtcagctacgctgtcagtttgagcacgcagagcgct
cctgggacatctgtcgtcagagtgaccgcctatgacccagactcaggcgagaatggcaga
attacatacaaaacagtagctggagggggctccccttactttactctcaacaaagaaaca
ggagtgatctccctgtctcggtctgtctacgggagagccaactctgtcattcccatggaa
atctctgctcaggatggtggcggcctggttgcccttgttagtgccagagtcaacattagc
gtggtggcagggctggtggccccaccagtgtttcaacagactcagtaccacttttctgtg
tcagaggacgtcttgcgggggacagtcgtcggcttcgtccaggctagcactaagataggc
acctctcgagatctctcctacaccatcagttctggcgacccaggaggctacttcacagtg
gacccggacactggggccataaggaccagtgtgcccctggatcatgaagaccagtcagct
ctgaacttggaggtgcaggcccgcagtggcaacccgcctgcgtttggccatacacgtgtc
cacatcaccatcgcagacatcaacgataacccgcctgttttcctcccctcgtcctccgag
tccctgctgctgccggaacatacagaaatgggcacagtggtgtatcgtgtccaagctgag
gaccgagactctggggttaatgggaaactcacctttgacctttcttctccaagtggaatc
cagaggacttttagcatagagcgcagcaatggagacatccgattggtggggagcctcaac
tatgagattgctccccgttatgacctccaggtgatcggcaaggatggtggagtaccgcaa
cttagcgccacctttgtgctagtggttcatgtccaggccgaaaatgaccagggacccgta
ttcgataccctcacataccgcgtagagctaaaagaagggactccgataaacacacgtttc
ctgcaggtcagggctctgaacagagaaacctcaggctcaggttacctcagtcccctcgcg
taccgcctccgtccagatggagatgctgcagggttcggcattgctgcagacagtggctgg
ctgtttgtgaagaattccctagacagagaagtcaaagacatgtatcttataacagtgctg
gccagccaaggtgttgggcagttgaagaagacgggtagtgccacggtgcggatatcggtg
actgatgagaatgacaactctcctcggctcactcaggagagggtctttatggctgcgaga
gaaaacctgcccgcaggaacaggttttggtcatgtgacggcgtcagaccgtgacagcggc
ccgaacggacgcctcagctaccaattcctgcgccctgatcgccacttccagattaactcc
cacacaggtgagatcagtacaaggactactctggacagagagcagcagtcgagctaccag
ctggtgatggtggttcaagacggaggttcgccccctcgcagcaccacgggcacggcattc
atcaccgtcctggacgaaaacgacaatgaccctgctttcatccacagccaggcgggcaaa
catctcatcatacaggtgacagaaggccagtcgccgggggttttactgggcacgctacaa
gccaaagatcccgatgaaggggagaatggaactgtattctacactttgtcaggtcccaga
gccgagcgtttttctttgaaccccaacactggtgagttgcgctcatcgtctcctctgagc
cactcggagcgggccgagtacaccctgacggtgacagctactgacagaggactttcccct
cgcagcacctcctgccccttcaccattcaggttctcagcattaacagacccacttctcag
accaattcattttccatgtccttcaactctgtcgaggaggccaaacctggatctgttatt
ggctcagtccacattcatgagagagaaaccgctgaagaaggggaggtgacctacactgtg
gttgggggtacggaccgagatgggacttttgttgtggaccgtctgaccggagacgtgtac
ctagctcgtcctcttgactatgagcgagacgcgcgctactccctggagattgaggtggat
aacctctccgaggcccatcctagcagtaccctggtgcacctggacattaacgtggaggac
agcaatgaccacacccctcagttccccgaggaccccatcacaatcgttatctctgaaaac
atggtgcccggctcttctgtccataccttccaggccacagataaagacggcagcggtccg
aacagcgagctgacgtactccatttttcaccagtggccaaacacccctggcctgctgacc
ctcgacccttccactggggttctctcgttgggccaggagctggaccacgaagtcgcgtcc
aacctgattctggttgtaaaggcgacagactctgcccacgacgccagccagaggcgctgg
ggttctgtcacggcgagggtgtatgtaaccgatgagaacgacaatccgccggtgttcagc
tcgccaacagctgtcagcgtgatggaagaccagccggtgggctttgtggcgctctatgtc
atggctagggacgcagaccagggggagaatggcagagtgacctacagcatccagtcaggc
aacaccggggggacatttggcctcaacactaacactggctctctgtctattttcaaacct
ttggaccgtgaggaacaggacgtctttaacctcacaataaccgcagaggaccatgggaca
ccccaacactcgtccagccagctgctgtgtgtccatgtgattgatgttaacgatgaggtg
ccccggtttgaggagagccagtacgaagcccaggtctctgaaaaccagccaccgggaact
agtgtgttgactgtgtccgcctctgatctggaccaaggaaccaatggacaggtgacatac
ggggggatctcagaggagggtttcagcatcaatccaggcacaggtgtaataactacctcg
aagtggctcgacagggagcttcaggagtactacaccttcacagtttatgcaaaagacgaa
ggccttcctcccaattatgccaaagccacagtgaggatcagagtgcttgataagaatgac
aacgcccctttctttggacggctctactacagaatagaagtgcccgaaaacctagaaaca
ttacctctttttactctgaaagctacggacaaggatgcaggaaatagcggggtgatccac
tacaaaattacagatggagatcccttgggggacttcctcatggatggacagcttggtgtg
ttgtccacctcaaggtctttggatcgagagagaagggccggatacacgctaacggtcaca
gctcaggatctgggccaccctccactcagcagctctgctacggtggaggtgactgttttg
gacatcaacgatcacagcccccagtttcagagtagcggctacactgccgacgtttcggaa
gatgttcccatcggctcgctcgtcctagaggtgaaagctattgatatggatcagggcccc
aacagccaggtgctgtactttctgagcagcggctccaatagcatgttcattgtagaccag
aacacaggacgcatcatcacggcagcacccttagacagagaaagaactgcttcgtacacc
tttggtgtgtgcgctaccgattcttcccctgggaacccacgtaactccactgttcaggtg
accgtccacattcaggacgtgaacgacaatgcaccctacttcattcaggacccgcttatt
gttaacatctccgccagcaccgtgtccagccgccgcgtgctggccaccatgagggcagaa
gacaaggactttggtgcaaatggctctgtgttctatcgtttcgccaaccctgtgaggggt
ttcaccatcaactcactgacgggagacatccaggccacggagaggctacaggctctgacc
caaagccagagaactttgataattcaggccatggatcagggaaaccctgcgcagtcctcc
ctgggagtggtgatcgtttatatcaaggaacagagctacagagggattcgcttctcccgc
acggctcgagacgtcagtctgcaagagaacgcggcaaaaggcacagtagtaacacagact
gaggcccagtaccctgacggctctcaaactggtatcagctacagttttttcagtggaaac
agaatgcaatcttttggaataaactccatcactggtgaaatatgggtccagagatctgaa
gaactagactttgaggagactcctaaactccgccttgtggtgaaagcggagacagcatcc
tccagcacctacatggctgtcaacttgatcctgcaggacatcaatgacaactggccacgc
ttcgaactccagaactatgttgcctatattagagaggcacagggctatgattttcccatc
attcaggtttctgcagatgacctggaccagggacaaaatggtcaggtaacctactccatc
aggtcatcatccatgagcggcttgtttaagatagacccattgaccggcagcatcacaact
gcagccataatggacagagagatctggacggaaacaaagctggttgttacggcaacagac
cggggtaccccgcgactggctggctcggccactctcactgtgattgtcatcgacctcaac
gacaacagtcccatgattcctcttcaccgggagatccgagtgcccgaggatactctgatg
ggcacagttatcacccaggtaacgggaaatgacgttgactcagggccagctctctcttac
acactacacctcgatacaaaaatccaaggcatgtttggaattcatcgttatggaggaggg
gtgtctctgactggccttctggactacgaggacaggacgtggtacactctgaccgtccgc
tcgtctgactctgtacatcaaagcgaggctaacatcactgtactagtggacgacgtgaac
gataacgcgccgacctttactcaagactcgtatcaggtcactgtatcagagcacctccca
gcaggcagtccagtcatcacagtaacagccaccgaccgtgactctggagagaacgggaag
ataacctacagagtgatgtcttcaaccaggagcgtcttctacatcgacccaagcaacgga
actctgtttgtcaaccaaaaaacagagtttgatttcaagaatccctacatcttggtggta
attgaggtgcgggaccagggcactccgtccctttcatctactgccactgtccaagtacaa
gtttccgacgtcaatgacaatgccccgatcttccaccagtcagagtacaaagccactgtg
tgtgaagatgggcttcctggatcaactgttctgaccttggaggctgtggacggagacctg
tcgcgggacaactgtggttttgattttgccatcgccagtggcaactcaggcaataccttc
cagattgagagcagcgtgcgcttcttggaaggcttgggcttccagacagtcggcagcctg
atcctggtggaggagcttgactttgaagcggtggcgagttataacctgacagtggtggta
tcagatcgaggaatccctcagcgcagctccagcgtgcccgttctcatcagtgtcacggat
gccaacgacaaccctccagccttcgcccgagcagagtacagcgccatgctgagcgagggg
gcggcggtagacacagagctcctgcatctgtctgccacagatccagactctgctcccaat
gcggaggtgcagtactccataagctcaggggacgagacagacatgttccaggtggaccgg
tggactggagcactgaggctgcagaggcctctggacagtgagaggcagtgggcccatacg
attgttgtcacggctacagacggtcgtggtcactacgctttggccaccgtcagtattgag
gtgaaggacatcaatgacaatcggcctttctttcccctcaaactgataactgcaagcatc
agggaaaaccaaccccagaaggccttggtcaccatgctgcatgcaatcgaccatgacaga
ggtgtttttggacagttgcagtactacatgttagacaaccctaaagaggcgagagacgcg
ttcctcatcaaccaaacttccggagaattacgcactcgctctacttttgacttcgagagg
gcaaactccttccgttttgtggctgtggctatggatgctggcaactattcggccactgta
acagtgcagatctatgttacaggagaggatgaatatgatcctgttttcacttcctcggag
ttgtcatttgaagtgcccgagggagcaaagaaaggtgagaccattggaaagttgcaagcc
acagatgaagacggaggcgtggatggcattgtcctctactctctagcagacagttcacct
tattttgaagtcaataaatccacaggggccctttccttgaagatggacagctacagtagg
catgtgagtcgctctaaaagagagctgcgtctaatgacactggaggtgatggctcacagc
cctctggagacgtcccggcgagcagtggccaaagtgtccatagatgtgacccatacaagt
tttggtctcaccacagatatgaacatactgcttgtcagcatcattgcggtttccctcggg
accatagtcatattaatagtaattgctgtcgcgctcttttttgttaaattaaggcgtcgg
agaaaggagagaaagtcacacagaaaacctcaggtgtcaggcacaatgctgcacaagttt
gaggaaacaaagattgcggcgagtgaaatgatttaccatcaggccctcccgggatacgcg
gccgatcagagtggcagcactggggctccgtacacgcgcggagggtcctcggatccctcc
cactctagcggccgcggctctgcggaggccgaggccgcagaggatgatgagatcagaatg
ataaatgaataccctcgggtgtcaagtatctcctcctccatgcaggagcgcatctctgcc
cgaggtccggactcgggaatccagcaggatgcggatcagctgtcagacgtgtcctgtgag
ccttccatagattggttcaaaggaaagaaactgggcagtgtgaatggtactttattatct
ggccagttgccggtttacagggacgaggggggcgggtttgggggtgtgggacggggactc
agcatctcccacccaaaagattatactttcccagaggatggaaagcctgctgtggacggg
tccctgacagccgtcgtggccagtgatgaggagctgaggggcagctacaactgggactac
ctgctcaactggtgtccgcagtttcaacctctagccaacgtttttaccgaaatagcgcgt
ttgaaagacgagacgactcctcctcaccctcgcaagtcattttatcacaaggccaaggcg
gagtcaagaatcgaccccccgcctctcataacctccgtggcccaccccggggccaagact
gtacctacaaagcctgccgtgggcaggacgttcccccacttggcgtcgtttcgaaggtct
cccctcagcgcagagggatccatctcctcagtcgccatgtctccaagtttctctccctct
ctctcgccgctggctgcacgctctcccgcaatcacccccttcagtgtctcccagggcccc
tctgcatcactgatcagcacgaccgaacatcatttagaacacagcgaggaggcagagctg
aggatttga
DBGET
integrated database retrieval system
