Pungitius pungitius (ninespine stickleback): 119216538
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Entry
119216538 CDS
T07626
Symbol
lsm4
Name
(RefSeq) U6 snRNA-associated Sm-like protein LSm4
KO
K12623
U6 snRNA-associated Sm-like protein LSm4
Organism
ppug
Pungitius pungitius (ninespine stickleback)
Pathway
ppug03018
RNA degradation
ppug03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
ppug00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
119216538 (lsm4)
09123 Folding, sorting and degradation
03018 RNA degradation
119216538 (lsm4)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ppug03019
]
119216538 (lsm4)
03041 Spliceosome [BR:
ppug03041
]
119216538 (lsm4)
Messenger RNA biogenesis [BR:
ppug03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
119216538 (lsm4)
mRNA degradation factors
5'-3' decay
Lsm complex
119216538 (lsm4)
Spliceosome [BR:
ppug03041
]
Complex B
U4/U6.U5 tri-snRNP components
LSm proteins
119216538 (lsm4)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
LSM
Motif
Other DBs
NCBI-GeneID:
119216538
NCBI-ProteinID:
XP_037325374
LinkDB
All DBs
Position
7:11860859..11863745
Genome browser
AA seq
151 aa
AA seq
DB search
MLPLSLLKTAQNHPMLVELKNGETYNGHLVSCDNWMNINLREVICTSRDGDKFWRMPECY
IRGSTIKYLRIPDEIIDMVKEEVVSKGRGRGGPQQNKQQGKGGRGGGGASRGLFGGRGRG
MTGPSRGQQQQLQLQPQDKKQGKPQGMKNQH
NT seq
456 nt
NT seq
+upstream
nt +downstream
nt
atgcttccactatctctgctaaagactgcccagaaccaccctatgctggttgagctaaag
aacggggagacgtacaacggtcacctggtgagctgcgacaactggatgaacatcaacctg
agagaagtcatttgcacttcaagggatggcgataagttctggagaatgcccgagtgctac
atcagaggaagcaccatcaagtacttgcgaatccctgatgagattattgacatggtgaag
gaggaggtggtgtcaaagggtcgtggacgtggaggcccccagcagaacaaacagcagggc
aaaggaggaagaggaggaggaggagctagccgaggcctgtttggcggccgtggcagagga
atgactggtcccagtcggggccaacagcagcagcttcagctgcagccgcaggataagaaa
cagggcaaaccacagggaatgaaaaaccagcactga
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integrated database retrieval system
