Pungitius pungitius (ninespine stickleback): 119216666
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Entry
119216666 CDS
T07626
Symbol
fxr1
Name
(RefSeq) RNA-binding protein FXR1 isoform X1
KO
K15516
fragile X mental retardation protein
Organism
ppug
Pungitius pungitius (ninespine stickleback)
Brite
KEGG Orthology (KO) [BR:
ppug00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ppug03019
]
119216666 (fxr1)
Messenger RNA biogenesis [BR:
ppug03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
119216666 (fxr1)
Factors involved in mRNA localization
Other mRNA localization factors
119216666 (fxr1)
mRNA cycle factors
Stress granule specific factors
119216666 (fxr1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
FXMRP1_C_core
KH_9
FXR_C1
Tudor_FRX1
KH_1
Agenet
FXR_C3
KH-I_KHDC4-BBP
Tudor_2
DUF150_C
Motif
Other DBs
NCBI-GeneID:
119216666
NCBI-ProteinID:
XP_037325597
LinkDB
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Position
7:complement(3358754..3370131)
Genome browser
AA seq
753 aa
AA seq
DB search
MEQVPLQPPNLCPDASSNTCRPDTLCVPTMEELVVEVRGSNGAYYKGVIKDIHDDSLTIA
FENNWQPERQVPFNDIRMPPPADAKKEIGEGEEVEILSKANDQEPCGWWLAKVRMMKGAF
YVIEYAACDATYNEIVTFERLRPVNTNKAITKNSFHKCTVSIPQDLQEACQSENAHKDFK
KAVGACRISYCPETSQLLIVSTNETTVKRVSLLSDMHLRSIRTKLLLMSRNHEATKHLES
SRQLVSSFQEEFMVRTDLMGLAIGSHGSNIQQARKVPGVSAIDLDEETGTFRIYGETAEA
VKKARNYLEFLEDSVQVPRALVGKVIGKNGKVIQEIVDKSGVVRVRIEGDNDNKQPRQEL
TQGMVPFTFVGTKESIGNVQVLLEYHISYLNDMAELLAEGQQLEEELREIEDYTQESRLA
RLRICNKRHTEVEQLRLERMQIDEQLRQITQVHRPGDRERGERGGGGGGYNTDGNASSSS
LHGSRSYNGRGRGRRGHGYSTGYGTNSEQSNASETDSERKEELSDWSLAGEDQDRERERG
SRPQRDARRRPGPARGRGGFGGRGRGGRGGYNNTSAGPRDHEDNNAFGAAETETDQAADT
DASESNLPANRRRRSRRRRTDEEATLIDGISESDNASTSENGIDDSEVKPQRRNRSRRRR
IRLPEERQPVTVADYISRADSQSRETPTTKDTKKNMDVGQVDAIAEDSPPSAPATTNGSD
NAADTEGSNGPGAPAKVPYQGDANPLPVANGLS
NT seq
2262 nt
NT seq
+upstream
nt +downstream
nt
atggagcaggtacctctccagcctccaaacttgtgtcccgatgcctccagcaacacctgt
cgtcccgacaccctttgcgtgcccactatggaggaactggtggtggaggtccggggctcc
aatggggcttattacaagggcgtcatcaaagatatccacgatgactctctcaccattgcc
tttgagaacaattggcagccagagcggcaggtgcccttcaatgatatccggatgccacct
cccgctgacgccaagaaggagatcggggagggcgaggaggtggagatcctctccaaagcc
aatgatcaggagccttgtggttggtggctcgctaaagtccgcatgatgaagggagctttc
tatgtgatcgagtatgccgcgtgcgatgccacctacaatgagatagtgacctttgagcgt
ctgcgtccagtcaacactaacaaggccatcaccaagaactcctttcataagtgcacggtc
tccattcctcaagatctgcaagaagcgtgccagagtgagaatgcccataaagattttaag
aaagctgtgggagcctgtcgcatctcgtactgccctgagaccagccagctactgattgtg
tccaccaatgagacaaccgtgaagcgtgtttctttgctgagtgacatgcacctgcgcagc
atcaggaccaagctgctgctaatgtcacgcaaccatgaggccacaaagcacctggagagc
tccaggcagctggtgtcctccttccaggaggagttcatggtgagaacggatctgatgggc
ctggccatcggcagccacggcagtaacatccagcaggcacggaaagttccaggggtcagt
gccattgaccttgatgaggagaccggcacattcaggatttatggcgagacagcggaggcc
gtgaagaaggccaggaactacctggagtttttggaggactccgtgcaggtgcccagggcc
ctcgttggcaaagtgattggtaagaacggtaaggtcatccaggagattgtggacaagtcc
ggtgtcgtgagggtcaggatagaaggggacaatgacaacaagcagcctcgacaggaattg
acacagggaatggtcccattcacctttgtcggtactaaggagagtattggaaatgttcag
gtcttgctggagtatcacatctcttaccttaatgacatggcggagcttcttgcagaaggc
cagcagctagaggaagagctgagggagattgaggattatacacaggaaagccgcctagca
agattgagaatatgcaacaaaaggcacactgaagttgagcagcttcgtctggagagaatg
cagattgacgaacagttacgtcagatcacccaggttcatcgcccgggtgacagagagaga
ggcgaaagaggaggaggaggaggagggtataatacggatggcaatgcctcttcctcttct
ttacatggcagtcgctcctacaatggccgagggcgtgggcgcagaggccacggctacagc
actggatatggcaccaactcggagcagtccaacgcctcagagaccgactcagagcgcaag
gaagagctcagtgactggtccctcgctggagaagaccaggaccgggagagagaaagaggc
tcacggccccaaagagacgcccgcaggaggcccggacccgccaggggccggggcgggttc
ggagggcgggggcggggaggaagaggaggatacaacaacacctctgcaggtcctcgggac
cacgaggacaacaacgcctttggcgctgcggagacggagacggaccaggcggctgacacc
gatgctagtgagtccaacttgcctgcaaaccgacgcaggagatctcgacggcgcagaaca
gacgaagaagccacactgattgatggcataagcgagtccgacaacgcctcaacgagtgag
aacggaatagacgactcagaagtcaaacctcagcgccgcaatcgtagtagacgccgccgc
atccgcctgcccgaggagaggcagccagtgacggtggctgactacatctcacgggcggat
tctcagagcagagagacgccgaccactaaggacaccaagaagaacatggatgtgggtcag
gtggatgccatcgctgaggacagcccaccatcagcaccggcgaccaccaacggttccgac
aatgctgccgacaccgagggcagcaatggccccggagctcccgccaaagtcccctaccag
ggggacgctaaccccctacctgtcgctaacggactgtcctag
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