Pungitius pungitius (ninespine stickleback): 119216741
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Entry
119216741 CDS
T07626
Symbol
ptbp1b
Name
(RefSeq) polypyrimidine tract-binding protein 1b isoform X1
KO
K13218
polypyrimidine tract-binding protein 1
Organism
ppug
Pungitius pungitius (ninespine stickleback)
Brite
KEGG Orthology (KO) [BR:
ppug00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ppug03019
]
119216741 (ptbp1b)
03041 Spliceosome [BR:
ppug03041
]
119216741 (ptbp1b)
Messenger RNA biogenesis [BR:
ppug03019
]
Eukaryotic type
mRNA surveillance and transport factors
Factors involved in mRNA localization
Trans-acting binding proteins
119216741 (ptbp1b)
Spliceosome [BR:
ppug03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
Other SAPs
119216741 (ptbp1b)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RRM_5
RRM_1
RRM_8
RRM_occluded
RRM_PARP14_3
Motif
Other DBs
NCBI-GeneID:
119216741
NCBI-ProteinID:
XP_037325735
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All DBs
Position
7:19831086..19842862
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AA seq
536 aa
AA seq
DB search
MDGSVHQDLTVGTKRGSEETFPSVSIGPYIMSTTANGNDSKKFKGDIRGPGVPSRVIHIR
KLPNDISEGEVISLGLPFGDITNLLMLKAKNQAFLEMNSEEAAQNMVGYYSTVMPIIRNH
LVYVQFSNHKELKTDNSPNQERAQAALRALTSHVDPTMVAPSSVLRVVVENLVYPVTLDA
LCQIFSKFGTVLRIIVFTKNSQFQALLQYAEGASAQSAKLSLDAQNIYNGCCTLRISFSK
LTTLNVKYNNEKSRDFTRPDLPSGDSQPSMEHPAMATAFTPGIISAGPYGGATHGFPPAF
TLQPAMSSHYPGLVPAMPGALASLSLPGATRLGFHHMSAGVSVLLVSNLNPERVTPHCLF
ILFGVYGDVMRVKILFNKKENALVQMSDCTQAQLAMSHLSGQQLHGKSLRITPSKHTSVQ
LPREGHEDQGLTKDYSNSPLHRFKKPGSKNYSNIFPPSATLHLSNIPPSVVEDDLKMLFS
TSGAMVKAFKFFQKDHKMALIQMGSVEEALEALIEFHNHDLGENHHLRVSFSKSSI
NT seq
1611 nt
NT seq
+upstream
nt +downstream
nt
atggacggcagtgtccaccaagatttaacagttggtactaagagaggatctgaagagact
ttccccagcgtctccatcggcccgtatatcatgagcaccacagccaatggaaacgacagt
aagaagttcaaaggtgacataagaggtcccggggtgccgtccagggtcatccacatccgc
aagctccccaacgacatctcagagggcgaggtgatcagcctcggcctgccgttcggggac
atcaccaacctgctgatgctcaaagccaaaaaccaggccttcttggagatgaactcggag
gaagctgctcagaacatggtgggttattactccacagtgatgcccatcatcaggaaccat
ctggtctacgtccaattctccaatcacaaggagctcaagacggacaactctcccaaccag
gagagggcccaggccgctctccgggccctcacttctcacgtggacccaactatggtggct
ccgagctccgtgctgagggtggtggtggagaacctggtgtatcccgtcaccttggacgcg
ctctgccagatcttctcaaagttcggcacggtgctgaggatcatcgtcttcaccaagaac
agtcagttccaggctctgctgcagtacgccgagggagcctccgcccagtccgccaagctg
tctctggacgctcagaacatctacaacggctgctgcactctgaggatcagcttctccaaa
ctcaccaccctcaacgtcaagtacaacaacgagaagagccgcgacttcacccgacccgac
ctgccctccggggacagccagcccagcatggagcacccggccatggccaccgccttcact
ccaggtatcatctcagctgggccgtacggcggagcgacgcatggcttcccgccggccttc
accctccaaccggcaatgtcctctcactatccaggcctggtccccgctatgcccggggcc
ctggcctccctgtccctccccggggccacaaggctggggttccaccacatgtccgctgga
gtctctgtcctgctggtcagcaacctgaaccctgagagagttacgccccactgcctcttt
attctcttcggtgtttatggcgacgtgatgagagtcaagattctgttcaacaagaaggag
aacgctctggtccagatgtcggactgcacacaggctcagctagccatgagccacctgagc
ggacagcagctgcacgggaagtctctgcgcatcacgccgtccaaacacaccagcgtccag
ctgccccgggaaggccacgaggaccagggcctgaccaaggactacagcaactcccccctg
caccgcttcaagaagcccggctccaagaactactccaacatcttcccgccttcggccacc
ttgcacctctccaacatccccccgtccgtggtcgaggacgacctcaagatgctgttctcc
acctccggagccatggtcaaggccttcaagttcttccagaaggaccacaagatggctctg
atccagatgggctcggtggaggaggcgctcgaggccctcatcgagttccacaaccacgac
ctgggggagaaccaccacctgcgggtctccttctccaagtcctccatctga
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