Pungitius pungitius (ninespine stickleback): 119216932
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Entry
119216932 CDS
T07626
Symbol
pdgfra
Name
(RefSeq) platelet-derived growth factor receptor alpha
KO
K04363
platelet-derived growth factor receptor alpha [EC:
2.7.10.1
]
Organism
ppug
Pungitius pungitius (ninespine stickleback)
Pathway
ppug04010
MAPK signaling pathway
ppug04020
Calcium signaling pathway
ppug04144
Endocytosis
ppug04510
Focal adhesion
ppug04540
Gap junction
ppug04810
Regulation of actin cytoskeleton
Brite
KEGG Orthology (KO) [BR:
ppug00001
]
09130 Environmental Information Processing
09132 Signal transduction
04010 MAPK signaling pathway
119216932 (pdgfra)
04020 Calcium signaling pathway
119216932 (pdgfra)
09140 Cellular Processes
09141 Transport and catabolism
04144 Endocytosis
119216932 (pdgfra)
09144 Cellular community - eukaryotes
04510 Focal adhesion
119216932 (pdgfra)
04540 Gap junction
119216932 (pdgfra)
09142 Cell motility
04810 Regulation of actin cytoskeleton
119216932 (pdgfra)
09180 Brite Hierarchies
09181 Protein families: metabolism
01001 Protein kinases [BR:
ppug01001
]
119216932 (pdgfra)
09183 Protein families: signaling and cellular processes
04090 CD molecules [BR:
ppug04090
]
119216932 (pdgfra)
Enzymes [BR:
ppug01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.10 Protein-tyrosine kinases
2.7.10.1 receptor protein-tyrosine kinase
119216932 (pdgfra)
Protein kinases [BR:
ppug01001
]
Receptor tyrosine kinases (RTK)
PDGFR family [OT]
119216932 (pdgfra)
CD molecules [BR:
ppug04090
]
Proteins
119216932 (pdgfra)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PK_Tyr_Ser-Thr
Pkinase
Ig_3
I-set
Ig_2
ig
VEGFR1-3_N_Ig-like
VEGFR-1-like_Ig-like
V-set
Haspin_kinase
Motif
Other DBs
NCBI-GeneID:
119216932
NCBI-ProteinID:
XP_062419452
LinkDB
All DBs
Position
7:21016235..21029480
Genome browser
AA seq
1461 aa
AA seq
DB search
MDGVRTGLVFGGFLVVLVSVTSGLSPPTIASSEEELVLQPNAAFNISCSGSESVIWVDPL
LDNTYVQSGYNTATLFILNATVENTDYYMCTYESLKDQPEGENEAGIYVFVTDPQFPFVP
ETPENLQVTIDRVGVPIPCRVSDPNSHVTLRSVSSGEEIPTLYDNKMGFFGHLSPGQYLC
ETTVNGRTVTSDVYTVDTEDASEEVGDFDVEVKASGELVRAGEPFNVTCVAPSGPTFQQQ
WLHLKRQARDAVQTKQTLLGRVVYTLSVPRASLWDSGAYECSVTEELSGEIRVGSAAVAV
SEENSFVSLDHSGIGATEFVSLLEETEFLILIHAFPAPKVTWLKDGKDLSQNYFVLTKTS
HVEGNRYRSILTLRQPLGKDDGNYTIRALSGSRTAQFSFTLKVKAPTAVMFPPSSAPVLL
PRTEELVVPLRTPFTLTCRGEAKLAWVTPPGVDEQMREDNSGLFVTTVTVDDATAMHTGY
YTCFYSQNTTEEAEDSSIYVYVPDPDVPFVPSLEPFSNLILSDHKDMEIQCRVSDPSANV
TLVNVETQQPVASVYDSKRGAVGVFAAGTYVCKALINGEEHHSEEYIVHGWPGGNPLHVE
LTAERTALLVGDPLTVICVARGSEILEDHWKYPGKVANRGVKTVRDIPRLQEIRYNLTIH
QVSVKDSGIYSCSITDVVSEESQTKEVAIRVFASDFLSVWPEFSEYESAELDEVREFRAE
ISSFPAARVTWLKDGAALGDVTAEIGLRQLSETSYMSVLTLIRAKEEDSGNYTMRVENGD
QRRDVSLMLQVKVPAVIVNLMDIHHGAATTGQSVVCIARGQPLPVVEWFICKSIKHCAND
SFAWAPLPANSTEVTADSHVNEDGDLESQVMFGHLQNTLAVRCLARNDMAAVSREIKLVS
SGPHQELTVAAAVLVLLVIVIISLIVLVVIWKQKPRYEIRWRVIESVSPDGHEYIYVDPM
QLPYDSRWEFPRDRLVLGRILGSGAFGKVVEGTAYGLSRSQPVMKVAVKMLKPTARSSEK
QALMSELKIMTHLGPHLNIVNLLGACTKSGPIYIITEYCFYGDLVNYLHKNRETFLSLNP
EKTKKELDIFGINPADESSRSYVILSFESKGDYMDMKQADSTQYVPMLEMSDASKYSDIQ
RSEYDHPPSQKEDEMDELLSDEGLSTTDLLSFTYQVAKGMEFLASKNCVHRDLAARNVLL
SQGKMVKICDFGLARDILHDSNYVSKGSTFLPVKWMAPESIFDNMYTTLSDVWSYGILLW
EIFSLGGTPYPGMVVDSSFYNKIKSGYRMSKPELAPDDVYEMMMKCWNSEPEKRPSFLGL
SDTVSSLLPSSYKRHYERVNRQFLKSDHPAVTRVCAESDDAYIGISHKSNNKLKDRESGF
DEQRLSSDSGYIIPLPDLEPPSDDEYGKRNRHGSQTSEESAIETGSSSSTYAKREGETLE
DITLLDEMCLDCSDLGEDSFL
NT seq
4386 nt
NT seq
+upstream
nt +downstream
nt
atggatggggtaaggactggtctcgtctttgggggttttctggtggtgttggtttcagtc
acttccggtctgtcgccacctaccatcgcgtccagcgaagaagagttggtcctgcagcca
aacgccgccttcaacatcagctgcagcggcagcgagagcgtcatttgggtcgatcccctc
ctggacaacacctacgtgcagtcggggtacaacacggcgacgcttttcattctcaacgcc
accgtggaaaacaccgactactacatgtgcacctacgagtccctcaaggaccaaccggaa
ggagagaatgaggcgggaatatacgtcttcgtaacagatccccagtttcccttcgtccct
gagaccccagagaacctgcaagtcaccattgacagagtgggggtccccatcccctgccga
gtgtcggaccctaactctcatgtgactctgaggagcgtctccagtggagaggagattccc
accctctacgacaacaagatgggcttcttcggccacctgtcgcccgggcagtacctgtgt
gaaaccacggtgaacggcaggacggtcacgagtgacgtctacaccgtggacaccgaagac
gcttccgaggaggtgggggattttgatgtggaggtgaaagccagcggcgagctggtgaga
gccggggagcccttcaacgtaacatgcgtcgctccctcaggacccaccttccagcagcag
tggctgcacctcaagagacaggccagggacgcagttcagacgaagcagacgctcctcggc
cgggtcgtctacaccctcagcgtcccgcgggcctctctttgggacagcggcgcctacgag
tgctccgtcaccgaggagctcagcggcgagatcagagtcggcagcgcggcggtcgccgtc
tccgaggagaattccttcgtgtcgctggaccacagcgggatcggggccacagagtttgtg
agccttctggaggagacggagttcctcatcctcatccacgccttcccggcccccaaagtg
acctggctgaaagacggaaaagacctgtcacagaactactttgtcctcacaaagaccagc
cacgtggaagggaaccggtaccgaagcatcctgacactacggcagcctctggggaaagac
gacggcaactacaccatccgagccctcagtggctcccgcaccgcccagttctccttcacc
ctcaaagtgaaggcccccaccgccgtgatgttccccccgtcctccgccccggtgctgctg
ccgcggacggaggagctggtggtgcccctccgcacgccgttcaccctgacctgtcggggg
gaggccaaactggcctgggtgacgccgcctggcgtggacgagcaaatgcgagaggacaac
agcggcctgttcgtcaccacggttaccgtggacgacgccacggcgatgcacaccggctac
tacacctgcttctacagccagaacaccacggaggaggcggaggacagcagcatctacgtc
tacgtgccagacccggacgtcccctttgtgccctcgctggaacccttcagcaacctcatc
ctgtccgaccacaaggacatggagatccagtgccgcgtgtccgaccccagcgccaacgtg
accctggtcaacgtggagacccagcagcccgtcgccagcgtgtacgacagcaagcggggc
gccgtgggggtgttcgccgccggcacctacgtctgcaaggcgctcatcaacggagaggag
catcacagcgaggagtacatcgtccacggctggccaggtggcaacccgctgcacgttgag
ctgaccgccgagcggaccgctctgcttgtgggcgaccccctcaccgtcatctgtgtggct
cgggggtccgagatcctggaggaccactggaagtaccccggaaaagtggcgaatcgcggc
gtgaaaacggtgcgagacatcccgaggcttcaggagatccgctacaacctgaccatccat
caggtctccgtcaaagacagcggcatctactcgtgctccatcaccgacgtcgtcagcgag
gagagccagaccaaggaggtggccattcgcgtgttcgccagcgacttcctgtccgtctgg
cccgagttttcagaatacgagtcggcggagctggacgaggtccgagagttcagggccgag
atcagctccttccccgccgcccgcgtcacgtggctcaaagacggcgcggcgctcggcgac
gtgacggcggagatcggcctccgtcagctcagcgagaccagctacatgagcgttctcacc
ctgatccgggccaaggaggaggacagcgggaactacaccatgcgggtggagaacggagac
cagagacgcgacgtcagcctgatgctgcaggtcaaagtgcctgcagtcatcgtgaacctg
atggacatccatcacggcgccgccaccaccggccagtcggtggtgtgcatcgccagaggg
cagcccctcccggtggtggagtggttcatctgcaagagcatcaaacattgtgccaacgac
tcgttcgcatgggcgccgctccccgccaactccacggaggtcacggcggactcgcacgtg
aacgaggacggcgacctggagagccaggtcatgttcggccacctgcagaacacgctggcc
gtgcgctgcctggcccgcaacgacatggccgccgtcagcagggagatcaagctggtgtcc
agtgggcctcaccaggagctgaccgtagccgccgccgtgctggtgctgctggtcattgtc
atcatctcactcattgtcttggttgttatctggaaacagaagccgcgctacgagatccgc
tggcgggtcatcgagtccgtgagccccgacggacacgagtacatctacgtggaccccatg
cagctcccctacgactcgcgctgggagttcccccgggaccggctggtgctcggtcgcatc
ctgggctccggcgccttcgggaaggtggtggagggcaccgcctacggactcagccgctcg
cagcccgtcatgaaggtggccgtgaagatgctgaaacccacggcccgctccagtgagaag
caggccctgatgtcagagctgaagatcatgactcacctcgggccgcacctcaacatcgtt
aacctcctgggagcctgcaccaaatcagggcccatctacatcatcacggagtactgcttc
tacggggacctggtcaactacctgcacaagaacagggagaccttcctcagcctgaaccca
gagaagaccaagaaagagctggacatctttgggatcaaccctgcagatgagagcagcagg
agctacgtgatcctgtccttcgagagcaagggcgactacatggacatgaagcaggccgac
agcacgcagtacgtccccatgctggagatgagcgacgcctccaagtactcggacatccag
aggtccgagtacgaccaccccccctctcagaaagaggacgagatggacgagctgctgtca
gacgagggcctcagcaccaccgatctgctcagcttcacctaccaggtggccaaaggcatg
gagttcctggcctccaagaattgtgtgcatcgggacctggccgccaggaacgtcctcctc
tctcaaggaaagatggtgaagatctgtgacttcggcctcgcccgggacatcctgcacgac
agcaactacgtctccaaagggagcacgttcctgcccgtgaagtggatggccccggagagt
atctttgacaacatgtacaccaccctgagtgacgtgtggtcctacggcatcctgctgtgg
gagatattctccttgggtggaaccccgtacccgggcatggtggtggactcgagcttctac
aacaagatcaagagtggatacaggatgtccaaaccggagctggcccccgacgacgtgtac
gagatgatgatgaagtgctggaacagcgagccggagaagaggccttcgttcctgggtctg
agtgacactgtatcttctctgctgccctccagctacaagaggcactacgagagggtcaac
cgccagttcctgaagagcgaccaccccgccgtgacccgggtgtgcgcggagagcgacgac
gcctacatcggcatcagccacaagagcaacaacaagctgaaggaccgcgagagcggcttc
gacgagcagcggctgagctccgacagcggctacatcatcccgctgcccgacctggagccg
ccatccgacgacgagtacggcaagaggaaccgccacggctctcagacgtccgaggagagc
gccatcgagacgggctccagcagctccacctacgccaagcgcgagggggagaccctggag
gacatcacgctgctggatgagatgtgcctggactgcagcgacctgggggaggacagcttc
ctgtga
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