Pungitius pungitius (ninespine stickleback): 119217377
Help
Entry
119217377 CDS
T07626
Symbol
shoc2
Name
(RefSeq) leucine-rich repeat protein SHOC-2
KO
K19613
leucine-rich repeat protein SHOC2
Organism
ppug
Pungitius pungitius (ninespine stickleback)
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LRR_8
LRR_4
LRR_14
LRR_1
LRR_LRWD1
LRR_9
LRR_13
LRR_5
Motif
Other DBs
NCBI-GeneID:
119217377
NCBI-ProteinID:
XP_037326796
LinkDB
All DBs
Position
9:998283..1010988
Genome browser
AA seq
582 aa
AA seq
DB search
MSSTLGKEKDLKEKDPKGGPAGKEREKEARALAGLVKDGGKETKTKGKDPKEGKKDTSSS
TPGVAFSVDNTIKRPNPAAGTRKKSSNADVIKELNKCREENSMRLDLSKRSIHILPSSIK
ELTQLAELYLYSNKLQSLPAEVGCLSGLVTLALSENSLTSLPDSLDSLKKLRMLDLRHNK
LREIPAVVYRLTSLTTLYLRFNRITAVERDIRNLSKLTMLSIRENKIKQLPAEIGELCNL
ITLDVAHNQLEHLPKEIGNCTQITNLDLQHNELLDLPETIGNLASINRLGLRYNRLSAIP
RSLAKCRELEELNLENNNISVLPEGLLSSLVNLTSLTLARNCFQSYPVGGPSQFSTIYSL
NMEHNRINKIPFGIFSRAKVLSKLNMKDNQLTSLPLDFGTWTSMVELNLATNQLTKIPED
VCGLVSLEVLILSNNLLKKLPHGIGNLRKLRELDLEENKLESLPNEIAYLKDVQKLVLTN
NQLTTLPRGIGHLTNLTHLGLGENLLQHLPEEIGTLENLEELYLNDNPNLHSLPFELALC
SKLSIMSIENCPLSHLPPQIVAGGPSFIIQFLKMQGPYRAMV
NT seq
1749 nt
NT seq
+upstream
nt +downstream
nt
atgagtagtactttaggcaaagaaaaagatttgaaagaaaaggaccccaaaggtggtcca
gcggggaaagaaagggaaaaggaggccagggctctagccggcttagtcaaggatgggggc
aaagaaaccaagaccaaagggaaagaccccaaagaaggaaagaaggacaccagcagctcc
acgccgggcgttgccttctccgtcgacaacacgataaagcggccgaacccggccgccggt
acgcgcaagaagtccagcaacgctgatgtgatcaaagagctcaacaagtgccgggaggag
aactcaatgagactggacctatcgaagcggtccattcacatcctgcccagctccatcaag
gagctcacgcagctggctgaactctacctatacagcaacaagctgcagagcctgccggca
gaggttggctgcctgtcggggctggtcactttagccctgagcgagaactccctgaccagc
ttgcccgactccctggactctcttaagaagctccggatgctcgacctccggcacaataag
ctgagggagataccggctgtcgtctaccggctgacgtctcttaccacgctgtacttgcgc
ttcaaccgcatcacggcggtggagagggacatccgaaacttgtctaagctcactatgctc
agcatccgggagaacaagatcaaacagctgcctgcagagattggggagctatgcaacctc
ataactctggatgtggcccataaccagctggagcacctacccaaggagattgggaattgc
acacagataaccaacctcgacttgcagcacaatgagctcttggacctcccagagactata
ggcaacctggcaagcataaatcgcttaggtcttcgatacaatagattgtcggccatccct
cgatcgttagccaaatgtcgagagcttgaggagctgaacctggaaaacaacaacatttca
gtgttgccagagggtttactgtcaagtttggtgaatctgacaagtctgacattggcgagg
aactgcttccaatcgtaccccgtgggtggaccgtcccagttctccaccatctattccctc
aacatggagcacaaccgcatcaacaagatcccctttggcatcttttccagggccaaagtg
ttgagcaagctcaacatgaaggacaaccagttaacgtctctgccgttggactttggcaca
tggaccagcatggttgagcttaacctggcaaccaatcagctgacgaagatccccgaggac
gtgtgtggtttggtctctctggaggtgttaattctatccaataatcttctcaagaagtta
ccacacggtattggaaacttgagaaagctgcgggagctcgacttggaggaaaacaagttg
gagagtctacctaatgaaattgcttatctgaaagatgtccagaaattggtgttgacaaat
aatcagctgaccacgttacccagaggcatcggccacctcaccaacctgactcatctgggt
ttgggggagaacctgctccagcacctcccagaggagattggtacgctggagaacctggag
gaactgtacctcaacgacaatcccaacctgcacagcctaccgttcgagctggccctctgc
agcaagctgtccatcatgagcatcgagaactgtcccctcagccacctgccgccgcagatc
gtggcgggggggccctccttcatcatccagttcctgaagatgcagggaccgtaccgtgcc
atggtctga
DBGET
integrated database retrieval system
