Pungitius pungitius (ninespine stickleback): 119217483
Help
Entry
119217483 CDS
T07626
Symbol
helz
Name
(RefSeq) probable helicase with zinc finger domain
KO
K25168
helicase with zinc finger domain [EC:5.6.2.-]
Organism
ppug
Pungitius pungitius (ninespine stickleback)
Brite
KEGG Orthology (KO) [BR:
ppug00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ppug03019
]
119217483 (helz)
Messenger RNA biogenesis [BR:
ppug03019
]
Eukaryotic type
mRNA degradation factors
5'-3' decay
Other 5'-3' decay factors
119217483 (helz)
3'-5' decay
Other 3'-5' decay factors
119217483 (helz)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA_12
AAA_11
zf-CCCH
AAA_19
AAA_30
ResIII
UvrD-helicase
PAM2
zf_CCCH_4
nSTAND_NTPase5
PhoH
AAA_22
AAA_16
zf-CCCH_4
Motif
Other DBs
NCBI-GeneID:
119217483
NCBI-ProteinID:
XP_037327054
LinkDB
All DBs
Position
9:1844240..1874192
Genome browser
AA seq
2077 aa
AA seq
DB search
MADRRAEKSCEEASRSLARREYEAAVSHSTDALVVLAPQAPPSGAPVPPSSPSLGAAAGP
LRSRALLYRISAFLQLKNYDEADEDCKHVLAEEIARGDGSLQASLRFMLLDGSLQEVASI
LSKALYGEPMNGIVAKDLTRLKMLFSEIESINREMAPEYTEEQEEEFQDGWQFRPPPRGV
TSSEEYTLCKRYLEQGLCRYGAQCTSAHSQEELMEWQKRYASRLIRLKQQQESKHFTESY
METLIEKWMNSLSPEKVLSDYLEGVNVETSSSLSVTVTTKKSAHSWTFSFLCKPPRKLFR
IALLYDAHRPHFFITGVSPGERLQALPNGCQEWTPGEETAADNGLDHCVYNVAVGFSTEI
FGTFRQTVVFDFGSEPVLMKRIMVDAASIEDLEHLMAARQQLLITAKRWDPSCKTIVEFC
PNETMADLERSLLSRYQIPLSADQLFTQSVLDKTLTKDNYQARLHDLLYIEEIAQYKEVS
KFNIKVNLQLVTSFMLTGISVGAKYAQNGQLFARFKLTETLSEDTLAGRLVMTKVNSVLV
LPFGREGVSNHPPPGVKERVYEAVIEEKTKDYIFLRICKNCCDELGLLPDRELQVELQFQ
LNRLPLCEMHYALDRIKDNGILFPDIGLVPTIPWSPNRQWDEQLDPRLNAKQKEAILAIT
TPVSIPLPPILIIGPYGTGKTFTLAQAVKHILRQDTSRVLICTHSNSAADLYIKDYLHPY
VEAGNAHARPLRVYFRNRWVKTVHPVVQQYCLISNTHINFKMPTREDVLRHRVVVVTLST
SQYLCQLDLEPGLFSHILLDEAAQAMECETIMPFALASKHTRIVLAGDHMQLSPFVYSEF
ARERNLHVSLLDRLYEHYPPEYPCRILLCENYRSHEAIISYTSELFYDGKLMASGKQPSH
KDFYPLTFFTARGEDVQEKNSTAYYNNAEVFEIVERVEELRKKWPVSWGKLDDSSIGVVS
PYADQVFRIRAELRKKRMHEISVERVLNVQGKQFRVLFLSTVRTRHTCKHKQTAIKRKEQ
LVEDSTEDLDYGFLSNYKLLNTAITRAQSLVAVVGDPIALCSVGRCRKFWEHFISICHEN
ASLHGITFEQIKSQLEALELKKTYVLNPLAPEFIPRALRPQQGHHSSSQALHPHHHPHPQ
HAQAPSNKQGPQLQQQQQQQQQQQQQQQQQQSPPKGKHANHTEHLPPEGYAQPNPAVLMG
NPIRAFTPPLGGPPAAMGKSPSPVQRIDPHTGASILYVPAVYGGNMVMSMPLTLPWPGYQ
NRFPVDPRIMNHPAAMAYNFNLLQAQNRGSPIPYSGMTHSSHLGMGQPSPDKELQADPIR
NGKLEGCPKSEQSRLQTPERKSTDMKEKQGDLDSGQSRSLDAQPDGLVGFPNSLLHRKDP
PAAQRPLNYHLAPPNPAFPPHPASGRAFPPQYPVSRLPYRVGQPQHPGMAPPSQQQLSPA
YTGGSHNASFFIGPMPSHRAVQSPTLDGPEPAGVEDMSGSIRTPMGHPGGHHPGLSQHNR
VNSFAEDGQDGGLGDGLDLQGPLALEALSQQQQAARLGQWGEAAGPFLQGSVPFPLPQQL
AHLGQPGMARFPPQLLRPASWGLSANIEDEAVPSASTGPPFTRYPGLLRELPPHEQNEPR
DATEMQPPPQSRLLQYRQSQSRASGDPSSSLAPTPNHASSFPSGPYSHDAGRDLLNDNPL
NNPALQQQHPGNPLYNTGSYPHQQPTHSAGNPSSQVKYLLQEAQWPHVGAASVSPPQQNH
LLGNQGHSLPYGLPIMPHPSRQEQVHLMQLHHQHQQQQQQQQQQQQHHQHHQQQQQQPPP
LHPQQQSQVPDHESYHPLPPRTSAATALHNVDEYEPRGPGRPLYQRRISSSYPDEPSLVN
AHNAQQQQPCTSDIQDHPHQHIQHPHAPYGYPSHDLWPSNGGGPGSFQNIPCNGAGTLSQ
HRDLLAPKALRQSEEQVKAEVTAAQQTHPHSLNSLQHLGQFPPLKPKNKQQQQQQQQQQQ
QQQQQQQQQQQQQQQQPPPPPPPPPPPPPQAPTEASQGAPNLSKPPTMSYASALRAPPKP
RAVRPEQVKKNSDPLSLLQELSIGSSNGSNGYYSYFK
NT seq
6234 nt
NT seq
+upstream
nt +downstream
nt
atggcggacaggagagcggagaagtcatgtgaagaagccagcagatcgttagccaggcgg
gagtacgaggcggcagtcagccacagcacggacgccctggtggtccttgcgccgcaagcc
ccaccctccggtgcccccgtcccaccgagctccccgtccctcggcgctgctgccggaccc
cttcgcagccgagccctgctctatcgaatttctgccttcttgcagctgaaaaactatgac
gaagcagatgaagactgcaaacatgtccttgcggaggagattgccagaggtgatgggtcg
ctacaggccagcttgcgcttcatgctgttggatggcagcctgcaggaggtggccagcatc
ctctctaaagccctgtatggggagccaatgaatggcattgtcgcaaaagacctcaccaga
ttaaaaatgctcttctcggagatcgagtcgataaatagggagatggcacctgaatacaca
gaagaacaggaggaagagttccaagatggctggcaattccgtcctcccccccgaggcgtc
accagcagtgaggagtacaccctctgtaaaaggtacttggaacaaggtctgtgtcggtac
ggggcccagtgtacgtcggcccattctcaggaggagctgatggagtggcagaagcgctac
gcgtcacgcctcatccgcctcaaacagcagcaggagagcaaacacttcaccgagagctac
atggagaccctgatagagaagtggatgaactccctctccccagagaaagtgctaagtgac
tatttagaaggagtgaatgtagaaaccagctccagcctctctgtgacggtcaccaccaaa
aaatctgcacactcgtggaccttctccttcttgtgcaagccgcctagaaagctgttccgc
atcgccctgctctatgatgcgcaccgaccccacttcttcatcacaggtgtgtcacccggg
gagcgactgcaagctctccccaacggttgccaagagtggactccaggagaggagaccgca
gcagacaacggccttgaccactgtgtgtacaacgtagccgtgggcttcagcacggaaata
tttgggaccttccgacagaccgttgtttttgactttggctcggagcctgtgctgatgaag
cggatcatggtggatgcggcctccattgaagacttggaacacctgatggcagccaggcag
caactcttgatcaccgcaaagcgctgggacccttcctgcaagaccatcgtggaattctgt
ccaaatgaaacaatggctgacctggagcgcagcctcctttctcgctatcagatccctctg
tcggcagatcagctttttactcagtcagtcctggacaagactctgaccaaagacaactac
caggcccggctacatgacctgctctacatagaagagattgctcaatacaaggaagttagc
aagtttaacatcaaagtgaatctccagctcgtcaccagcttcatgttgacaggcatctct
gtcggagccaagtatgcccagaacggacagctctttgcacgcttcaaactcactgaaaca
ctgtctgaggacacattggctggacggctagtgatgaccaaggtgaattcagtcctagtg
ctgccatttggccgtgaaggggtcagcaatcatccgcctcccggggtcaaagagcgtgtt
tacgaggctgtaattgaggagaagacgaaggactacatcttcctgaggatctgcaagaac
tgctgtgatgagctagggcttctgcccgacagggaactacaggtggagctccagttccag
ctgaacagactgccactctgtgagatgcattacgctctggatcgcatcaaagataatggc
atccttttccctgacattggactggtccccaccatcccctggagccccaaccggcagtgg
gacgagcagctggatccccgtctgaatgccaagcagaaagaggccatcctggccatcacc
acgcccgtctctatccccctgcccccgatcctcatcatcgggccctacggcaccggcaag
accttcacgctggcgcaggctgtcaagcacatcctgcgccaggacaccagcagggtgctg
atctgcacacactccaacagtgcagccgacctttacattaaggactaccttcatccttac
gtcgaagcaggcaacgcgcatgccagacctctcagggtatacttcaggaaccgctgggtg
aagacggttcacccggtggtccagcagtactgtctcatctccaacacacacatcaatttc
aagatgcccacaagggaggacgtcctcaggcaccgcgtggtggtagtcacactcagcacc
tctcaatacctctgccagcttgacttggagcccgggctgttctctcatatcctcttggat
gaagcggcccaggccatggagtgtgaaaccatcatgccttttgctctagctagcaagcac
acccgcatcgtgctggctggagaccatatgcagctcagtccgtttgtgtacagcgaattt
gcgcgtgagcgtaacctgcatgtgtcactgctggaccggctgtatgagcactaccccccc
gaatacccttgtcgcatcctcctctgcgagaactaccgctctcacgaagctatcatcagt
tacacgtcagaattattttatgatgggaagttgatggcaagtgggaagcagccctcccac
aaggacttctaccctctgaccttcttcacagccagaggagaagatgtccaggagaagaac
agtactgcctattacaacaatgcagaggtattcgaaattgttgagcgggtggaagagttg
cgcaagaagtggccagtgtcctggggtaaactggacgacagcagcattggagtcgtgtca
ccttacgccgaccaggtgttccgcattcgtgctgagctccgaaagaagagaatgcatgag
attagtgtggaaagagtgctgaatgtccaaggcaaacagtttcgggtgctgttcctcagc
acggtgcggacgcggcacacctgcaaacacaagcagacggccatcaaacgtaaagagcag
ctagtcgaggactcgacagaggacctcgactatggattcctctccaactacaagctgctc
aacacggccatcaccagagcgcagtccctggttgcagttgtgggggaccccattgcgctc
tgttctgttgggcgctgcagaaaattctgggagcactttatctccatctgccacgaaaac
gcaagtctccatggcatcacctttgagcagatcaagtctcagctggaggccctggaactc
aagaagacctacgtcctcaatccattggccccagagttcatccctcgtgccctcaggccg
cagcaaggccaccactcttcatcgcaggccctccacccccaccatcatccacatcctcag
catgctcaggccccctctaacaagcagggtccgcagctccagcagcagcaacaacagcag
cagcagcagcaacaacaacaacaacagcagcagtccccacctaagggtaaacatgcaaac
cacacagaacatcttccgcctgaaggatatgcgcaacccaacccagctgtgttaatggga
aaccctattagggcattcacaccacccttgggtggcccaccagctgccatgggcaagtca
cccagtcctgttcagaggatagatcctcatacaggcgccagcatcctctacgtccccgct
gtgtacggtggcaacatggtcatgtctatgcccctgactttgccttggccaggttaccag
aatcgattccctgtagaccctcgcattatgaaccacccggcggccatggcctacaacttc
aatctgttgcaggcccaaaatcgaggctcccccatcccgtacagtgggatgacccactcc
tctcatctaggaatgggccagcccagccctgacaaggagctgcaggcggaccccatcaga
aatggtaaattagaaggatgtccaaagtcagaacagagtcgtcttcagacaccagagagg
aaaagcaccgacatgaaggaaaagcagggagatttggactcaggccagagccgaagtcta
gatgctcagccagacggactcgttggctttcccaattcgctgctccatcgaaaagatccc
ccagctgctcaaagacctctcaactatcacctggcaccacccaacccagctttccctcct
caccctgccagtgggcgggccttccccccacagtatccggtctctaggcttccttatcgt
gtcggccagcctcaacacccggggatggcgccaccgagtcagcaacagctcagccctgcc
tacaccggaggcagccacaacgcttccttcttcattggccccatgccttctcacagggct
gtccaatctcccactttggatgggcccgagcctgcaggggtggaagacatgagtggctcc
attcggactccaatgggccacccggggggtcatcaccctggcctgtcacagcataaccgc
gtcaacagctttgcggaggacggacaggatggaggccttggagatggtttggacctgcag
ggccccctggctttggaggccctcagccagcagcagcaggcagccagactgggccagtgg
ggggaggcggcaggcccttttctccagggaagcgttcctttccctcttccccagcagctt
gcccaccttggtcaacctggcatggctcgcttcccccctcagctgctccggccagccagt
tggggcctgagtgccaatatcgaggatgaagctgtcccttctgcttccactggaccacct
ttcaccaggtaccccggccttttgagagagcttcccccacatgaacaaaatgaacctagg
gatgcaactgagatgcagcccccacctcaatcccgtctccttcagtaccgtcagtcccag
tcccgtgcctcaggtgacccttcatcctctttagcccccaccccgaatcacgctagttca
ttcccatcaggaccctactcccatgatgcaggccgcgatctccttaacgacaaccctctc
aacaacccagctctgcagcagcagcatccgggaaaccctctgtataatactggtagctac
ccacatcagcaaccaacccactctgctggcaacccttcatcccaggtcaaatacctgctg
caggaagcccagtggcctcatgttggagctgcgtcagtgagcccaccgcagcagaaccac
ctgttgggaaaccagggccacagccttccttatggactgcccatcatgcctcatcccagc
aggcaggagcaggtccacctgatgcaacttcaccatcagcaccagcagcagcaacagcaa
caacaacaacaacagcagcaccaccaacaccaccaacaacaacaacaacaaccaccacca
ctgcatccacaacaacaaagtcaagttccagaccatgagagctaccacccacttcccccc
cgaacatcagcagccacagcccttcacaatgtagatgagtatgaacccagaggtccaggc
cggcctctctatcagcgtcgcatctcttctagctacccagatgaaccgtctctggtcaac
gcccataatgcccaacagcaacagccctgtacgtcagacatccaggaccacccccatcag
cacatacagcacccacatgccccctacggttacccctcacacgacctctggcccagcaac
ggtgggggtcccggctcgttccagaacattccatgtaacggagccggtacactcagtcag
caccgggaccttctggctccaaaggccctacgtcagtcggaggagcaggtgaaggctgag
gtcacagccgcacagcagactcacccacactccctcaactcccttcagcatcttggacag
tttcctcctctcaagcccaaaaacaagcagcagcagcagcaacaacagcagcagcagcaa
caacaacaacagcaacagcagcaacaacaacaacaacaacaacaacaaccaccacctccc
ccgccgccacccccaccccccccgccgcaggctcccacggaggctagccagggggctcca
aatttaagcaagccaccaaccatgtcctatgccagcgccctccgtgctccacccaaaccc
cgagctgttcgccctgaacaggtcaagaagaacagcgaccctctctccctcttacaagag
ctgagtataggaagttcaaacggtagcaatgggtactattcctactttaaatga
DBGET
integrated database retrieval system
