Pungitius pungitius (ninespine stickleback): 119217520
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Entry
119217520 CDS
T07626
Name
(RefSeq) rab5 GDP/GTP exchange factor-like
KO
K20131
Rab5 GDP/GTP exchange factor
Organism
ppug
Pungitius pungitius (ninespine stickleback)
Pathway
ppug04137
Mitophagy - animal
Brite
KEGG Orthology (KO) [BR:
ppug00001
]
09140 Cellular Processes
09141 Transport and catabolism
04137 Mitophagy - animal
119217520
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
ppug04131
]
119217520
Membrane trafficking [BR:
ppug04131
]
Endocytosis
Rab GTPases and associated proteins
Rab associated proteins
119217520
Protein recycling
Other Rab GTPase associated proteins
119217520
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
VPS9
DUF5601
zf-A20
Usp38-like_N
CID_GANP
Motif
Other DBs
NCBI-GeneID:
119217520
NCBI-ProteinID:
XP_037327125
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All DBs
Position
3:10028704..10034383
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AA seq
499 aa
AA seq
DB search
MMMSQRRGIHLDQSELLCTKGCGFYGNTGWQGLCSKCWREENQKEKQKQIQEDWALAERL
QKEEEEAYASRHKKTQLQPTITPFSKFEERKTKEKSSKVNTVTKFFIPSSKTPLKKDASL
EAQSSPSPSSSASRHSSVDSDHATREFIDFLKPLKSGREIFKQCRAFTESMVYKRDMAAD
ELSECVQDFYQNLSDRLHTQFKGSSEHVESVMDQVEKYMMTRLYKEVFCPETTDDEKKDL
AIQKRIRALHWVTIEMLCVPVDEEIAEVSDSVVKAITDVIEMDSKCVPKEKLACITRCSK
HIFNAIKVTKKEAASADDFLPTLIYIVLKANPPRLQSNIQYITRYSNPSRLMTGEDGYYF
TNVCCAVAFIEKLDGQSLNLSSEEFELHMTGQASPQRPQATGASSAPPGSGALAQGHQRV
DLLEGLGERQEQVMEKARQLESDLIDWTDEVEQKVQSVLESFPPEAPNPAATAAASAIDS
DNVENEQLPPPLQPQVFAG
NT seq
1500 nt
NT seq
+upstream
nt +downstream
nt
atgatgatgagccagcggcgtgggatccatctggaccaatcagagctgctctgcactaaa
ggatgtgggttttatggcaacaccggttggcaaggcctatgctccaagtgctggcgagag
gaaaaccagaaagaaaagcaaaaacagattcaagaggattgggcacttgctgagaggctg
cagaaagaggaagaggaggcctatgcaagcagacataagaagacccaattgcagcctacc
attacacccttcagcaagtttgaggaaagaaaaacaaaggaaaagtccagcaaagtcaac
accgtcacaaagttttttattccttccagcaaaacaccattaaaaaaagatgcttctttg
gaggctcagtccagcccgagccccagttcctccgcaagccgacattcctctgtggacagt
gaccacgcaacgcgagagttcattgattttctcaagcctctaaagtccgggagggagatc
ttcaaacagtgccgggccttcactgagagcatggtctataagcgggacatggctgctgat
gaactgtcagagtgtgtgcaggacttctaccagaacctctcggatcgcctccacacccag
ttcaaaggttcctcagaacacgtcgagagcgttatggatcaagtagaaaagtacatgatg
actcgtctctacaaggaggttttctgccctgagaccacagacgatgagaagaaagacctg
gccattcagaagagaattagagccttgcactgggtcaccatcgagatgttgtgtgttccc
gtggatgaggagatcgctgaggtgtcagacagtgtagtcaaagccatcacagatgtgatt
gaaatggattcaaagtgcgtgcccaaagagaagctggcgtgcatcactcgttgcagcaag
cacatcttcaacgccatcaaagtgaccaaaaaggaggcggcgtccgcagacgacttcctg
ccgacgctcatctacattgtgctcaaagcgaaccccccgcgacttcagtccaacatccag
tacatcacccgctacagcaaccccagcagactcatgaccggagaggacgggtactacttc
actaatgtgtgctgtgctgtggccttcatcgagaagctggacggtcagtctctgaacctg
agctctgaggagtttgagctccacatgacgggccaggcgtccccccaacggccgcaggcc
accggcgcttcctccgcccccccgggcagcggcgctctcgctcagggccaccaacgcgtg
gacctgctggaggggctcggggaaaggcaggagcaggtgatggagaaggcccgccagctg
gagagcgacctcatcgactggacggacgaggtggagcagaaggtgcagagcgttctcgag
agctttccgccggaggcgccaaaccccgccgcaaccgcagcggcatcggccatcgactct
gataacgttgagaatgagcagctcccccctcctctgcaaccgcaagtgttcgctggctga
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