Pungitius pungitius (ninespine stickleback): 119217797
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Entry
119217797 CDS
T07626
Symbol
rfc1
Name
(RefSeq) replication factor C subunit 1 isoform X2
KO
K10754
replication factor C subunit 1
Organism
ppug
Pungitius pungitius (ninespine stickleback)
Pathway
ppug03030
DNA replication
ppug03410
Base excision repair
ppug03420
Nucleotide excision repair
ppug03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
ppug00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
119217797 (rfc1)
03410 Base excision repair
119217797 (rfc1)
03420 Nucleotide excision repair
119217797 (rfc1)
03430 Mismatch repair
119217797 (rfc1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
ppug03032
]
119217797 (rfc1)
03400 DNA repair and recombination proteins [BR:
ppug03400
]
119217797 (rfc1)
DNA replication proteins [BR:
ppug03032
]
Eukaryotic type
DNA Replication Elongation Factors
RFC (replication factor C)
119217797 (rfc1)
DNA repair and recombination proteins [BR:
ppug03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
RFC (replication factor C)
119217797 (rfc1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RFC1
BRCT
AAA
PTCB-BRCT
AAA_22
RuvB_N
AAA_30
Rad17
BRCT_2
AAA_5
AAA_17
AAA_16
AAA_14
nSTAND3
AAA_33
NTPase_1
AAA_18
AAA_19
AAA_7
Herpes_UL25
RNA_helicase
Motif
Other DBs
NCBI-GeneID:
119217797
NCBI-ProteinID:
XP_037327616
LinkDB
All DBs
Position
9:complement(5386445..5396295)
Genome browser
AA seq
1157 aa
AA seq
DB search
MDIRRFFAPTSDKSAVQKTPPTEHVKTEKKKKKKKNPLSSDEEVKKKEVAKAKSSKPEEK
KDSDKKRKKHAVIESDSEDEKPVRKTRKSPKEKRTTRKPEPPPKKDPVQYVSETDSDSDN
FQSLKKASKPKQNSAAKQTRPDAAVARPQVKGGLKSPPKPSTTQGKAAAKSPVTPKSTPP
PPLKQTHTSVLDYFGNAAVQRSDKKLVASTKRKAPIQEDDDLLSDEQIAKQLQMDEDLME
LEKQVHEDEEFARTLALLDEEPQAKKARKDSDEKPAAPAFPKPSPSKTNRRGSASEDAIG
PTPKKDPAPVKVSSKLATMKKKNEEQDAGSKGKTPATPTKIKISPKKDPLPSSGKKNIPK
AGTTPIAVKTSPMKIESTSPEGADKKKVNSAAFRNFLNRDGPRALGSKEIPLGAENCLEG
CMFVLTGVMESMERDDAKSLIERYGGKVTVSISKKTTYLVQGRDSGVSKLEKAESFGTKI
LDEDGLLELIRTKPGKKSKYEITAENQASKTKTPPGPKSTPKSQKISPSKGNSQSPHTPS
PSKTGQAPGAGPRNDGTPPGRRSGPTARRELGLSSSSSSPGTSSAAMDDATLLWVDKYRP
RSLKTVIGQQGDQSCANKLLRWLRNWNKHHSGGSSKPAAARFGKSGGGKDDGSAFKAALL
SGPPGVGKTTTAALVCEELGLSYVEMNASCTRSKNSLKEVVAESLSNTSIEGFYKGTSNK
VSSEHVLIMDEVDGMAGNEDRGGIQEMIGLIKHSKIPIIFMCNDRNHQKIRSLANYCFDL
RFQRPRVEQIKGAMMSLAYKEGIKIPPPALNEIILASNQDVRQVIHNLSMWSAKDKVMTY
DQCKSDAASARKDTKLGPFDVCRKVFSSGEDSAHMSLIDKSDLFFHDYSLAPLFVQENYP
HVRPRAAGGDLKAHLMLLSKTADSISDGDLVDRQIRSKQNWSLLPTQAIYASVLPGELMK
GYMNQFPTFPSWLGKFSSTNKHSRIVQELASHMGLKTMSSRQAVNLDYLHYLRGALLSPL
QRLGVEGSGEAVQLLDNYQLVREDVDSIMEISVWGGQPDPYSKLDSKVKAAFTRAYNKEV
HLTPYSLHVVKKGRRGGAGSELGGEDADNEAQESEDEGVNADAMIKQKKSKATKESKKKE
KEDSGKGRGKGKGKAKK
NT seq
3474 nt
NT seq
+upstream
nt +downstream
nt
atggacatcaggcggttctttgcaccgacttcagacaagtctgcggtgcagaaaacccct
ccaactgaacacgtcaaaacagaaaagaagaagaagaagaagaagaatcctctctcttcg
gacgaggaagtgaagaagaaagaggtcgccaaggcgaaaagctccaaaccagaggagaaa
aaggatagtgataagaaacgaaagaagcatgcagtcatagaatctgactctgaagatgag
aagccagtgaggaagaccaggaagtcaccgaaagagaaacggacaacaaggaaaccggag
ccgccccccaaaaaagatcctgtgcagtatgtctctgaaacagactcagacagtgacaac
tttcagtctttgaagaaggcctccaaacccaagcagaatagcgcggccaaacagaccaga
ccagatgcggctgttgctcgtccacaagtcaaaggggggctcaagtccccgcccaagccc
tccaccacacaggggaaagctgcggcgaagtctcccgtcaccccaaagtccactccgcct
cctcccctcaaacaaacgcacacctcggtactcgactacttcggcaacgcggctgttcag
cgctctgataagaagctggtagccagcaccaagcgaaaggccccaattcaggaagacgat
gatctgctgagcgatgagcagattgccaaacagctgcagatggatgaggacttgatggag
cttgaaaagcaggtgcatgaggacgaggaatttgccagaactttggcattgctggatgag
gagcctcaagctaagaaggctcgtaaagactctgacgaaaaacctgccgctcctgcattt
cccaaaccgagcccctcaaagaccaaccggaggggcagcgcgtcggaggatgcgataggc
ccgactccgaaaaaggaccctgcacccgtcaaagtcagctccaaactggccacgatgaag
aaaaagaacgaggagcaagatgctgggtcaaagggcaaaacgccagctacgcccacaaaa
ataaaaatctctcccaaaaaggatcccctcccttcgtctggcaaaaagaacatccccaaa
gcgggaaccacacctatcgccgttaaaacctctccgatgaagatagagagtaccagtccc
gagggggcagacaagaagaaggtcaactctgcagctttcaggaacttcctcaacagagat
ggaccccgagctctaggctccaaggaaatccctctgggtgcagagaactgtttggagggc
tgcatgtttgtgctgacgggggtcatggagtccatggagagggatgatgccaaatccctt
atcgaacgctacggaggcaaggtgacggtcagcatcagcaagaagaccacctacctggtg
cagggccgagacagcggagtatccaagctcgagaaggcggagagtttcggtacaaagatc
ctcgatgaggatggtctgttggagctgatcagaaccaaaccagggaagaagtccaagtac
gagatcactgcagagaaccaagcctcaaagaccaagactccccccggcccaaagagcacc
cccaaatcccagaagatctctccctccaagggcaattcccagtcccctcacaccccaagc
ccgtcaaagaccggccaggccccgggggccgggcccagaaatgacggcactccacctggc
agacgctcgggaccaacggcccgccgggagctcggcctttcctcgtcctcctcatccccg
gggacatcatcagcggccatggacgacgccactctgctgtgggtggacaagtaccgcccg
cgctctctgaagaccgtgattggtcaacagggtgatcagagttgtgccaataagctgctc
cgctggctgcggaactggaacaaacaccacagcgggggctcctccaagccagcagctgcg
aggtttggtaagtctggaggagggaaagatgatggatcagcatttaaagctgctctgctc
tctggacctccgggcgtggggaagaccaccacagcagctctagtctgtgaggagttgggc
ttgagctacgtggagatgaacgccagctgcacccgcagcaaaaacagtctgaaggaagtg
gtcgcggagtcactcagcaacacgagcatcgagggcttctacaaaggcacttctaataaa
gtgagcagtgaacacgtgctgatcatggatgaggttgatggcatggccggcaacgaagac
cgtggaggaatacaggagatgatcggcctgatcaaacattcaaagattcccatcatcttc
atgtgcaatgaccgtaaccaccagaagatcaggtcactggccaactactgcttcgatctg
cgcttccagaggccacgagtggagcagatcaagggagcaatgatgtccctcgcctacaaa
gagggaatcaagatcccgcccccggctcttaatgaaatcatcctagcgtccaatcaggac
gtccgacaggtgatccacaacctgagcatgtggtcggccaaagacaaggtgatgacgtat
gaccagtgcaagtcggatgcggccagcgcccgcaaggacaccaagctggggccgtttgat
gtttgcaggaaggtgttcagctcgggggaggacagcgcccacatgagcctcatcgacaag
tcggacctcttcttccacgactactcgctcgcaccgctcttcgtccaggagaactacccg
catgttcgcccacgggccgccggtggggacctgaaggcccacttgatgttgctcagcaag
acggctgattccatctctgacggagacctggtggaccgacagatccgctccaaacagaac
tggtcgttgctgcccacccaggccatctatgccagtgttttacccggcgagctgatgaag
ggctacatgaatcagttccccaccttccccagctggctcggcaagttctcctccaccaac
aaacattcccgcatcgtccaggagctggcctctcacatgggcttaaaaacgatgagcagc
agacaggcagtgaacctggactacctgcactacctgcggggggcgctgctcagccccctg
cagaggctcggagtggagggctccggcgaggcggtgcagctgctggacaactaccagctt
gtcagggaagacgtggacagcatcatggagatcagcgtgtggggcggtcagccggacccc
tactccaagctggactccaaggtgaaggccgcattcacgcgggcctacaacaaagaagtt
cacctgacgccgtactctctgcacgtggtgaagaagggccgccgcggcggggcggggtcc
gagttgggaggagaggacgcggacaacgaggcgcaggagtcggaggacgagggcgtgaac
gccgacgccatgatcaaacagaagaagtccaaagccaccaaggagtcaaagaaaaaggag
aaggaagattctgggaagggcagggggaagggaaaaggaaaggccaagaaatga
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