Pungitius pungitius (ninespine stickleback): 119217928
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Entry
119217928 CDS
T07626
Symbol
taf5l
Name
(RefSeq) TAF5-like RNA polymerase II p300/CBP-associated factor-associated factor 65 kDa subunit 5L
KO
K03130
transcription initiation factor TFIID subunit 5
Organism
ppug
Pungitius pungitius (ninespine stickleback)
Pathway
ppug03022
Basal transcription factors
Brite
KEGG Orthology (KO) [BR:
ppug00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
119217928 (taf5l)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ppug03021
]
119217928 (taf5l)
03036 Chromosome and associated proteins [BR:
ppug03036
]
119217928 (taf5l)
Transcription machinery [BR:
ppug03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIID
119217928 (taf5l)
Coactivators
SAGA/TFTC/STAGA complex
119217928 (taf5l)
Chromosome and associated proteins [BR:
ppug03036
]
Eukaryotic type
Histone modification proteins
HAT complexes
PCAF complex
119217928 (taf5l)
STAGA complex
119217928 (taf5l)
TFTC complex
119217928 (taf5l)
SAGA complex
119217928 (taf5l)
SLIK complex
119217928 (taf5l)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Beta-prop_WDR5
WD40
Beta-prop_WDR3_1st
Beta-prop_THOC3
WD40_Prp19
Beta-prop_CAF1B_HIR1
WD40_WDHD1_1st
WD40_CDC20-Fz
Beta-prop_WDR3_2nd
WD40_Gbeta
Beta-prop_EML_2
Beta-prop_WDR36-Utp21_2nd
WD40_MABP1-WDR62_2nd
EIF3I
TFIID_NTD2
Beta-prop_TEP1_2nd
WDR55
Beta-prop_WDR90_POC16_2nd
Beta-prop_WDR36-Utp21_1st
Beta-prop_EML
Beta-prop_TEP1_C
Beta-prop_WDR75_1st
WD40_MABP1-WDR62_1st
Beta-prop_IFT122_1st
NBCH_WD40
Beta-prop_Aladin
Beta-prop_SCAP
ANAPC4_WD40
WDR90_beta-prop_4th
Beta-prop_RIG_2nd
Beta-prop_WDR41
Beta-prop_IFT140_1st
RMC1_N
Beta-prop_VPS8
Tricorn_2nd
Beta-prop_HPS5
Beta-prop_EIPR1
Beta-prop_SPT8
Beta-prop_DCAF4
Beta-prop_WDR19_1st
PEP5_VPS11_N
PROPPIN
Beta-prop_IP5PC_F
WD_LRWD1
Tricorn_N
Cytochrom_D1
Motif
Other DBs
NCBI-GeneID:
119217928
NCBI-ProteinID:
XP_037327869
LinkDB
All DBs
Position
9:20045177..20050110
Genome browser
AA seq
599 aa
AA seq
DB search
MKRVRTEQIQYAVAQYLKRRQYVDTDGSLKGAKLFQSAEEMAASLTVQTESGCANIVSAA
PCQSEPQQYETQYSRLRSFLSETDISWAKEVSSILYPLFVYLHLDLVHCGLKGAVDGFYS
RFHGAFLQDGEQRATIEQLRHVLTAQDVAANPKLSAFLEHKYVVHLTEPAYSYLLRYLQS
EDNSGLCRALSTHLQVEVTASRRTDYELYGGAGALNPASSWPGADGAAAAAGGEGVEVPA
GVPQSEAALEALQDCIKKVREGPPTLTTVCFYAFHHTEQTLNAAEVSADSRLLAAGFDSS
TVKLWSLRPRKLKARAHRADVSLIHLACDVLEEEADEEDGSGSEIKTLRGHSGPVFRAAF
LTDSSGLLSCSEDTTIRYWDLGSFTNTALYRGHAYPVWDVDVSPCSLYFASGSHDRTARL
WTFSRTYPLRLYAGHLADVDCVKFHPNSSYLATGSTDKTVRLWSTQQGASVRLFTGHRGP
VLSLAFSPDGKYLASAGEDQRVKLWDLASGTLSKDLRGHTDSVTSLSFSPDSSLVASSSA
DNSVRVWDIRNSRGAAPADGSSGELVGLYTGNSSGVLNVQFMACNLLLVTGTAQEKAEP
NT seq
1800 nt
NT seq
+upstream
nt +downstream
nt
atgaagcgggttcgcactgagcagatccagtatgccgtcgctcagtacctgaagcggagg
cagtacgtggacaccgatggctccctgaaaggagccaagctcttccagtcggcggaggag
atggccgcgagtctcacagtgcagacggagtcgggctgtgccaacatcgtctctgctgcc
ccgtgccagtctgagcctcagcagtacgagactcagtactcacggctgcgctccttcctg
tcagagacggacatttcctgggcgaaggaggtgagcagcattctgtacccgctcttcgtc
tacctccacctggacctggtgcactgcggcctgaagggggcggtagacggcttctacagt
cgcttccacggcgcctttctccaggacggcgagcagcgcgccaccatagagcagctccgc
cacgtcctcaccgcgcaggacgtggcggccaaccccaagctgagtgcgttcctggagcac
aagtacgtggtgcacctgacggagccggcctacagctacctgctgcgttacctgcagagc
gaggacaacagcggcctctgccgggccctgagcacgcacctgcaggtggaggtgaccgcc
tccaggcgcacggactacgagctgtacggaggcgccggcgccctgaaccccgcctcctcc
tggccgggggcggacggggcggcggcggcggcgggcggcgagggggtggaggtccccgcg
ggggtcccgcagagcgaggcggccctggaggccctgcaggactgcatcaagaaggtccgc
gagggcccccccacgctcaccaccgtgtgcttctacgccttccaccacacggagcagacg
ctgaacgccgccgaggtctcggccgacagccggctgctggccgccggcttcgacagctcc
acggtgaagctgtggagcctccggccccggaagctcaaggcccgagcgcaccgggcggac
gtgtcgctcatccacctggcctgtgacgtgctggaggaggaggccgacgaagaggacggc
tccggcagcgagatcaagacgctgcggggccacagcggccccgtgttccgcgccgccttc
ctgacggacagctccggcctgctgtcctgctccgaggacaccaccatccgctactgggac
ctgggcagcttcaccaacacggcgctgtaccgcggccacgcctacccggtgtgggacgtg
gacgtcagcccctgcagcctctacttcgccagcggctcccacgaccggacggcccgcctg
tggaccttctcccgcacctacccgctgcgcctctacgccgggcacctcgccgacgtcgac
tgcgtcaagttccaccccaactccagctacctggccaccggctccacggacaagacggtg
cggctgtggagcacccagcagggggcgtcggtccgcctcttcaccggccaccgcgggccc
gtgctgtcgctggccttctcgcccgacggcaagtacctggcgtccgccggcgaggaccag
cgggtgaagctgtgggacctggcgtcgggcacgttgtccaaagacctgcggggacacacg
gacagcgtcaccagcctgtccttcagcccggacagcagcctggtggcgtcgtcctccgcg
gacaactcggtccgggtgtgggacatccggaactcgcgcggggcggcgccggccgacggc
tcgtccggcgagctggtggggctgtacacggggaacagcagcggcgtgctgaacgtgcag
ttcatggcgtgcaacctgctgctggtgacggggacggcccaggagaaggccgagccgtag
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integrated database retrieval system
