Pungitius pungitius (ninespine stickleback): 119218110
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Entry
119218110 CDS
T07626
Symbol
prpf8
Name
(RefSeq) pre-mRNA-processing-splicing factor 8
KO
K12856
pre-mRNA-processing factor 8
Organism
ppug
Pungitius pungitius (ninespine stickleback)
Pathway
ppug03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
ppug00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
119218110 (prpf8)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
ppug03041
]
119218110 (prpf8)
Spliceosome [BR:
ppug03041
]
Complex B
U4/U6.U5 tri-snRNP components
U5 snRNP specific factors
119218110 (prpf8)
Complex C
U5 SnRNP specific factors
119218110 (prpf8)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
PROCN
PRP8_domainIV
U6-snRNA_bdg
PRO8NT
U5_2-snRNA_bdg
PROCT
RRM_4
JAB
Motif
Other DBs
NCBI-GeneID:
119218110
NCBI-ProteinID:
XP_037328144
LinkDB
All DBs
Position
3:7591014..7605320
Genome browser
AA seq
2338 aa
AA seq
DB search
MAATFPYRGVPPGMPPGVPPPVTVPDYMSEEKLQEKARKWQHLQAKRYSEKRKFGFVDAQ
KEDMPPEHVRKIIRDHGDMTNRKFRHDKRVYLGALKYMPHAVLKLLENMPMPWEQIRDVP
VLYHITGAISFVNEIPWVIEPVYIAQWGTMWIMMRREKRDRRHFKRMRFPPFDDEEPPLD
YADNILDVEPLEAIQMELDSEEDSSVAEWLYEHQPLKDTAKFVNGTTYRRWQFTLPMMST
LYRLANQLLTDLVDFNYFYLFDLKAFFTSKALNMAIPGGPKFEPLVRDINLQDEDWNEFN
DINKIIIRQPIRTEYKIAFPYLYNNLPHHVHLTWYHTPNVVFIKTEDPDLPAFYFDPLIN
PISHRHSVKSQEPLPDEDEEFELPEYVEPFLKETPLYTDNTANGIALLWAPRPFNLRSGR
TRRAIDIPLIKNWYREHCPAGQPVKVRVSYQKLLKYYVLNALKHRPPKAQKKRYLFRSFK
ATKFFQSTKLDWVEVGLQVCRQGYNMLNLLIHRKNLNYLHLDYNFNLKPVKTLTTKERKK
SRFGNAFHLCREVLRLSKLVVDSHVQYRLGNVDAFQLSDGLQYIFAHVGQLTGMYRYKYK
LMRQIRMCKDLKHLIYYRFNTGPVGKGPGCGFWAPGWRVWLFFMRGITPLLERWLGNLLA
RQFEGRHSKGVAKTVTKQRVESHFDLELRAAVMHDILDMMPEGIKQNKARTILQHLSESW
RCWKANIPWKVPGLPTPIENMILRYVKAKADWWTNTAHYNRERIRRGATVDKTVCKKNLG
RLTRLYLKAEQERQHNYLKDGPYITAEEAVAIYTTTVHWLESRRFSPIPFPPLSYKHDTK
LLILALERLKEAYSVKSRLNQSQREELGLIEQAYDNPHEALSRIKRHLLTQRAFKEVGIE
FMDLYSHLVPVYDVEPLEKITDAYLDQYLWYEADKRRLFPPWIKPADTEPPPLLVYKWCQ
GINNLQDVWETAEGECNVMLESRYEKMYEKIDLTLLNRLLRLIVDHNIADYMTAKNNVVI
NYKDMNHTNSYGIIRGLQFASFIVQYYGLVMDLLVLGLHRASEMAGPPQMPNDFLSFQDT
PTESAHPIRLYCRYIDRIHIFFRFSADEARDLIQRYLTEHPDPNNENIVGYNNKKCWPRD
ARMRLMKHDVNLGRAVFWDIKNRLPRSVTTVQWENSFVSVYSKDNPNLLFNMCGFECRIL
PKCRTSYEEFTHKDGVWNLQNEVTKERTAQCFLRVDDESMQRFHNRVRQILMASGSTTFT
KIVNKWNTALIGLMTYFREAVVNTQELLDLLVKCENKIQTRIKIGLNSKMPSRFPPVVFY
TPKELGGLGMLSMGHVLIPQSDLRWSKQTDVGITHFRSGMSHEEDQLIPNLYRYIQPWES
EFIDSQRVWAEYALKRQEAIAQNRRLTLEDLEDSWDRGIPRINTLFQKDRHTLAYDKGWR
VRTDFKQYQVLKQNPFWWTHQRHDGKLWNLNNYRTDMIQALGGVEGILEHTLFKGTYFPT
WEGLFWEKASGFEESMKWKKLTNAQRSGLNQIPNRRFTLWWSPTINRANVYVGFQVQLDL
TGIFMHGKIPTLKISLIQIFRAHLWQKIHESIVMDLCQVFDQELDALEIETVQKETIHPR
KSYKMNSSCADILLFASYKWNVSRPSLLADSKDVMDSTTTQKYWIDIQLRWGDYDSHDIE
RYARAKFLDYTTDNMSIYPSPTGVLIAIDLAYNLHSAYGNWFPGSKPLIQQAMAKIMKAN
PALYVLRERIRKGLQLYSSEPTEPYLSSQNYGELFSNQIIWFVDDTNVYRVTIHKTFEGN
LTTKPINGAIFIFNPRTGQLFLKIIHTSVWAGQKRLGQLAKWKTAEEVAALIRSLPVEEQ
PKQIIVTRKGMLDPLEVHLLDFPNIVIKGSELQLPFQACLKVEKFGDLILKATEPQMVLF
NLYDDWLKTISSYTAFSRLILILRALHVNNDRAKVILKPDKTTITEPHHIWPTLTDEEWI
KVEVQLKDLILADYGKKNNVNVASLTQSEIRDIILGMEISAPSQQRQQIAEIEKQTKEQS
QLTATQTRTVNKHGDEIITSTTSNYETQTFSSKTEWRVRAISAANLHLRTNHIYVSSDDI
KETGYTYILPKNVLKKFICISDLRAQIAGYLYGTSPPDNPQVKEIRCIVMVPQWGTHQTV
HLPNQLPGHEYLKEMEPLGWIHTQPNESPQLSPQDVTTHAKVMADNPSWDGEKTIIITCS
FTPGSCTLTAYKLTPSGYEWGRQNTDKGNNPKGYLPSHYERVQMLLSDRFLGFFMVPGQV
SWNYNFMGVRHDPNMKYDLQLANPKEFYHEVHRPSHFLNFASLQEGEIYNADREDMYA
NT seq
7017 nt
NT seq
+upstream
nt +downstream
nt
atggcagccaccttcccctaccgaggggtccctccagggatgcccccaggtgtgccccct
cctgtgactgtgccggactacatgtctgaggaaaaacttcaggagaaagcaagaaaatgg
cagcacttgcaggcaaagcgctactccgaaaagagaaagtttggctttgtggatgctcaa
aaagaagacatgccacctgaacatgtccgcaagatcatcagggaccatggggacatgact
aatagaaagtttcgccatgacaagagggtgtaccttggtgccctcaagtacatgccccat
gctgtattgaagctgctggaaaacatgcccatgccctgggaacagatcagagatgtgccg
gtcctctaccacatcactggagcgatttcctttgtgaatgaaatcccctgggttattgag
ccagtctacatcgcccagtggggcaccatgtggattatgatgcgacgtgagaagcgtgat
cgtcggcacttcaagcggatgcgctttccaccttttgatgatgaggagccgccgctggac
tacgctgacaacatcctggatgtggaaccactggaggccatccagatggagctggactct
gaggaggactcttcagtggcagagtggctctatgagcaccaacctctcaaagacaccgcc
aagtttgtgaatggcaccacctaccgtcgctggcagttcacgctgcccatgatgtccacg
ctgtaccgcctggccaatcagctgctcacagacctggtggatttcaattacttctatctg
tttgacctcaaggccttcttcacttccaaggccttgaacatggccatccctggggggccg
aagtttgagcctctggttagggacatcaacctccaggatgaagactggaatgagttcaat
gacatcaacaagattatcattcgacagcctatcaggacagagtacaaaatcgccttcccc
tacctgtacaacaacttgccgcaccatgtccacctaacttggtatcatacacccaacgtg
gtgttcatcaagacagaggatccggatctcccagcattttactttgaccctctgatcaac
cccatttcacacaggcattctgtcaagagccaggagcctctgcctgatgaagatgaggag
tttgagctccctgagtatgtggaacccttcctcaaggagaccccactctacacagacaac
actgccaatggcatcgctctgctgtgggcaccgagacccttcaacctccgatccgggcgc
acaaggcgtgccatagatatccctctgatcaagaactggtaccgtgagcactgtcctgca
ggacagccagtgaaagtgcgtgtgtcataccagaaacttctgaagtactacgtgctcaac
gctctcaaacaccgaccacccaaagcccagaagaagaggtatctgttccgctccttcaag
gccacaaagttcttccagtccacaaagctggactgggtggaggtgggtctgcaggtttgc
agacagggttacaacatgctcaatctgctgatccatcgtaagaacctcaactacctgcat
cttgactacaacttcaacctgaagcctgtcaagacactgaccacaaaggagagaaagaag
tcccgatttggcaacgcttttcacttgtgcagagaggtgctgcgtctcagcaagctcgtg
gtggacagccatgtgcagtacagactgggaaatgttgatgctttccagttgtctgatggc
ctgcagtacatcttcgcccatgttggtcagctgaccggcatgtaccgctacaagtacaag
ctcatgagacaaatccgaatgtgcaaagatctgaagcatctcatctactaccggttcaac
actggacctgtaggcaagggtccaggctgtggcttctgggctcccggctggagagtgtgg
ctgtttttcatgagaggaatcactcctctgttggagaggtggctggggaatctgctcgcc
aggcagtttgaaggacgtcactccaagggcgtagcgaagacggtcaccaaacagcgcgtg
gagtctcactttgacctggagttgcgtgctgctgtgatgcacgacatcttggacatgatg
cccgagggcatcaaacagaacaaggccagaaccatcctgcagcacctcagtgaatcctgg
cggtgctggaaggccaacatcccctggaaggtgcctggcttgcccactcccatcgagaac
atgatcctgcgctacgtgaaggccaaagctgactggtggacgaacactgcccactacaac
cgtgagcgaatccgccgtggagccaccgtggacaaaacagtgtgcaagaagaacctgggg
aggctgacgcgtctgtacctgaaagctgagcaggagagacagcacaactacctgaaggat
ggcccctacatcacagctgaagaggcggtagccatttacaccaccactgttcactggctg
gagagtcggcggttctcgcccatccctttcccgccactgtcctacaaacatgacaccaag
ctgctcatcctggccttggagaggctcaaggaggcctacagtgtgaagtcccgtctgaac
cagagtcagagggaggagctggggttgattgagcaggcatacgacaatcctcacgaggcc
ttgtccaggatcaaacgtcacctgctcacccagagagcgttcaaagaggtgggtattgag
ttcatggacttgtacagtcacctggtgcccgtgtacgacgtagagcccctagaaaagatc
acagacgcctacctggaccagtacctgtggtacgaggcggacaagagacgccttttccca
ccttggatcaaacccgccgacactgaaccgccaccacttctggtctacaagtggtgccaa
ggcatcaacaacttgcaggacgtgtgggagactgcagagggagagtgcaacgtgatgctg
gaatcccgctatgagaagatgtacgagaagattgatctgactctgctcaacaggctgctg
cgtctaatcgttgaccacaacatcgccgattacatgacggccaagaacaacgtggtcatc
aactacaaggatatgaaccacacaaactcctacggcataatcagggggctccagtttgcc
tcgttcattgtgcagtactacggcctagtgatggacctactggtgctgggcctgcaccgt
gccagtgagatggccggccctccgcagatgcccaatgatttcctcagtttccaagacaca
cccacggagagtgcccacccaatcaggctgtactgccgctacattgaccgcatccacatc
ttcttcaggttctctgctgatgaggccagggatctgattcagaggtacctgaccgagcac
ccagatcccaacaatgagaacatagtgggttataacaacaagaagtgctggccccgcgat
gcccgcatgagactgatgaagcacgatgtcaacctggggcgtgctgtgttctgggacatc
aagaaccgcctgcccagatcagtgactactgtccagtgggagaacagctttgtatcggtc
tacagcaaagacaaccccaacctgctgttcaacatgtgtggctttgagtgccgcatcttg
ccaaagtgccgcaccagctatgaggagtttactcacaaggatggtgtgtggaacctgcag
aatgaggtgaccaaagagaggacagcgcagtgtttcttgcgtgtagatgatgaatcaatg
cagcgcttccacaacagagttcgtcagatcctgatggcctctgggtccaccacattcacc
aagattgtgaacaaatggaacacagctctgattggtctgatgacgtacttccgtgaagct
gtggtcaacacccaggagctcctggacctgctggtgaagtgcgagaacaagattcaaact
cgtatcaagatcggcctgaactccaaaatgccaagtcgcttcccccctgtagtcttctac
actcccaaagagttggggggccttggcatgctgtccatgggacacgtgcttattccccag
tcagaccttcggtggtccaaacagaccgatgtgggcatcacccacttccggtccggaatg
agccatgaggaagaccagctgattcctaacctgtatcgttacatccagccgtgggagagt
gagttcatcgactcccagagggtttgggccgagtacgccctcaagagacaggaggccatt
gcccagaacaggcgtctgactctggaagatttggaagactcgtgggacagaggaatccct
cgtatcaacacacttttccagaaggaccgtcacactctggcctatgacaaaggctggaga
gtcaggacggatttcaaacagtaccaggtgctgaagcagaatcccttctggtggactcac
cagaggcacgatggcaaactgtggaacctgaacaactaccgcacagacatgatccaggct
ctgggtggtgtggagggcatcctggaacacacactcttcaaaggcacttactttcccact
tgggagggtctcttctgggagaaggccagtggctttgaggagtccatgaaatggaagaag
ctgaccaatgcccagcggtctggtctgaaccaaattcccaaccgtcgcttcacactttgg
tggtcacccaccatcaaccgagccaacgtgtatgtgggtttccaggtgcaactcgacttg
acaggaatctttatgcacggcaagatcccaacactgaagatctccctcattcagatcttc
agggctcacttgtggcagaagatccacgagagcatcgtcatggatctctgtcaggtgttt
gatcaagagctagatgctcttgagattgagactgtgcagaaggagacaatccaccccagg
aagtcgtacaagatgaactcatcctgtgcagacattctcctctttgcatcatacaagtgg
aacgtctccagaccatctctgctggctgactcaaaggacgtgatggacagcaccaccacg
cagaagtactggatcgacatccagctgcgttggggcgactatgactctcacgacattgag
cgctacgccagggccaagttcctggactacaccaccgacaacatgagtatctacccctcc
cccacaggggtgctcatcgctatcgacctggcgtacaacctccacagtgcctatggtaac
tggttcccaggaagcaagcctctcattcagcaagccatggccaagatcatgaaggccaac
cctgcgctctacgtgctgagggagcgcatccgcaaaggtctgcagctgtactcctcagag
cccactgagccgtatctgtcctcgcagaactacggtgaactcttctccaaccagatcatc
tggtttgtagatgacaccaacgtgtacagagtcaccatccacaagacctttgagggtaac
ttgaccacaaagcccatcaatggagccattttcatctttaaccccaggactggtcagctt
ttcctcaagatcattcacacatctgtgtgggcgggacagaaacgtctgggacagctggcc
aaatggaagacagctgaagaagtggctgccctgattcgctccctccctgtggaagagcag
cccaaacagatcatcgtaaccaggaagggcatgctggaccctctggaggtccacttgctt
gacttccccaacatcgtgatcaaaggttctgagttgcagctgcccttccaggcctgtttg
aaggtagagaagttcggagacctgatcctgaaggccacggagcctcagatggtgctgttc
aacctgtacgacgactggctcaagaccatctcgtcctacacagccttctctcgactcatc
ttgatcctgagagccctccacgtcaacaatgaccgcgccaaagtgatcctgaaaccagac
aagaccacaatcacagagcctcatcacatctggccaacactcactgacgaggagtggatc
aaggtggaagtgcaactcaaggatctcattctggcagattatggcaaaaagaacaatgtg
aacgtggcctcgctgactcagtccgagatccgtgacatcatcctgggtatggagatctct
gctccgtcccagcagcgccagcagatcgctgagattgagaagcagaccaaagagcagtcg
cagctcaccgccacacagacccgaaccgtcaacaagcacggcgacgagatcatcacctcc
accacctccaactacgagacccagaccttctcctcgaagacagagtggcgagtcagggct
atatctgccgccaacctccacctccgcaccaatcacatctacgtgtcatccgatgacatc
aaggagacgggctacacttacatcctgcccaagaacgtcctgaagaagttcatctgcatc
tcagatctgcgggcacagattgccggctacttgtatggcaccagtccaccagacaacccc
caggtgaaggagattcgctgcatcgtcatggtgccacagtgggggacgcaccaaactgtc
cacctgcccaaccagctgcctggtcacgaataccttaaagaaatggagcccctcggctgg
atacacacgcagcccaatgagtcaccccagctgtccccacaggacgtcaccacccatgcc
aaggtcatggctgacaacccttcatgggacggagaaaagaccatcatcattacctgcagc
ttcaccccgggctcgtgcacgctcacagcctacaagctgacgcccagtggctacgagtgg
ggccgacagaacacggacaagggcaacaaccccaaaggctacctgccgtcccactatgag
cgagtgcagatgctcctctctgaccgcttcctgggcttcttcatggtgcccggccaggtg
tcctggaactacaacttcatgggtgttcgccatgaccccaacatgaagtacgacctgcag
ctggccaacccgaaggagttctaccacgaagtccacagaccatcgcacttcctaaacttt
gcttcgctgcaggagggcgagatctataacgcggaccgcgaggacatgtacgcctaa
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integrated database retrieval system
