Pungitius pungitius (ninespine stickleback): 119218281
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Entry
119218281 CDS
T07626
Symbol
patl1
Name
(RefSeq) protein PAT1 homolog 1 isoform X1
KO
K12617
DNA topoisomerase 2-associated protein PAT1
Organism
ppug
Pungitius pungitius (ninespine stickleback)
Pathway
ppug03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ppug00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
119218281 (patl1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ppug03019
]
119218281 (patl1)
Messenger RNA biogenesis [BR:
ppug03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
119218281 (patl1)
mRNA degradation factors
5'-3' decay
Decapping complex
119218281 (patl1)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
PAT1
Motif
Other DBs
NCBI-GeneID:
119218281
NCBI-ProteinID:
XP_037328474
LinkDB
All DBs
Position
9:8198384..8212390
Genome browser
AA seq
833 aa
AA seq
DB search
MFRFQSLDEDCTLEEEDEGLVEEEDEIDQFNDDTFGAGAIDDDWQEEHKRLAGLEERDGL
GAELGLEGGGLGEESDLGEGQTSTATHLHSAGHIPLSSPLSSLKFSLSSSGLPPDVDDRG
GGGDLAESLARLILEADPAIAGVGAAEKPGPSPSSSRSSLSALQGLNRPGVSPQPSSIPH
PIQPHQHPQHPQHQLPSGPSVSGLAPGLPLSSMLSYQQQQHLLRRGTAPMAQMNSHSIWE
NSMGFGPVSVSPGLVTHMEDSPLMSIIKEVGLPKRPSQARNDEVRDLSERVPPPRSSSPV
IGSPPVRAVPIGTPPKQPMSHALNHQIHHPTAVHVRAPVQHRYPAPFPERVSPNTLLNIA
NSPLCRGPFPPGVGTVLSQIQRAQLLNSQVAGFSRGGPGPPLLPVGSGFRPFFRGPPPPL
GHRMGPSPHGHLNHTPPIRHNTTHLHPQHRRMLTQRMQSRGGERGRTGGDRRSRDPYSNL
MTQKEKEWVTKIQMMQLQSTDPYLDDYYYQNYYEKMEKRQERERDSSKKEYTTKLITPQV
AKVEHTYRPVQFAGSLGKLTVSSVNNPRKMIDAVVTTRTDDEEKREKQVWNKRRQILYTV
EKMYSMLLEVQDFEKRFVQAPEEDREALLEQHKTNTTQLCNSLREKEWDNRVNDEQCVMI
MSVRKGKRLISRLLPFLPSPQAAAVVMAISRNLPALAKKDKQDQVLCWLVEPVSAVIQSL
SSSTLTDLLQELQGSEGQLATVLHNKFGVTLLYLILSEGERMQSTAPNCQLMDDNRWTEL
VFSVTRELLSIPSSSLSPPLFMPPNLLSLFSRYVDRQRLDLLQDKLQNTSSSS
NT seq
2502 nt
NT seq
+upstream
nt +downstream
nt
atgttccgatttcagtccctggatgaagactgtacgttggaggaagaagacgagggactg
gtagaagaggaagatgaaattgatcagttcaatgatgacaccttcggtgctggggccatt
gatgacgactggcaagaagaacacaagcgcctcgctgggcttgaagagagggacgggctt
ggcgcggaactgggtttggaaggagggggactgggagaagaatctgacttaggcgaaggt
cagacctcaaccgccacgcatctccattcagcaggccatatacccctttcatctcccctt
tcttccctgaagttctccttgtcttcctctggactgcctccagatgtagatgatcgagga
gggggaggggacttggctgagtccctggccagactcattctggaggctgacccggccatc
gcaggggttggagcagctgaaaaacctggtccatcccccagctcttcacgttctagcctt
tctgctctacaaggcttgaaccgccccggagtctcgccccagccctcctccatccctcat
cccattcaaccgcaccagcatccccaacaccctcagcaccagctaccttctgggccctct
gtttcaggccttgctcctgggcttcctctctcgtcaatgctcagctaccaacaacagcag
catctactgcgcagagggactgctccaatggcccagatgaactctcacagtatctgggag
aacagtatgggttttgggccggtcagtgtcagtcccggactggttacacacatggaggat
agtcctctaatgtctataatcaaagaggtgggcctcccaaaaagaccttctcaggctagg
aatgatgaagtacgggacttgtcagagagggtaccacccccacgctcttcttctcctgtg
attgggtcccctccggtcagggcagtgcctattggaacgccgcccaaacagccaatgagc
catgctctaaatcatcagatccaccatcccacggcagttcatgtgagagccccggtccag
cacagataccctgctcctttccctgagcgtgtgtcacccaacactctcctcaatatagct
aactctcctctgtgtcgtggtccattcccgcccggagttggtacagtcctgtctcagatt
caacgggctcagctgctcaactctcaggtggctggtttttctcggggtggacctgggcct
cctttgttacccgttggtagcggtttcaggccattcttcagggggccccctcccccactc
ggccacagaatgggcccgtcccctcatggccacctcaaccacacgccacccatccggcat
aacaccacccaccttcacccccagcaccgccgtatgctcacacagcgcatgcagagccgg
ggaggggagcgcggcaggactggaggggacaggcgaagcagggacccctacagtaaccta
atgactcagaaggagaaggaatgggtaaccaagatccagatgatgcagctgcaaagtact
gacccttatctggacgactactactatcagaactactatgaaaagatggagaaacgtcag
gaaagagagagggacagcagcaagaaggaatacaccaccaaactgataactccacaggtt
gccaaggttgaacacacctacagaccagttcagtttgcaggctctctgggtaagctgacc
gtctccagcgtcaacaaccctcgcaagatgattgatgctgtggtgacaacccgcacagat
gacgaggagaaaagagagaagcaggtttggaacaagaggcgacagatcctctacacggtg
gagaagatgtacagtatgctgttggaggttcaagacttcgaaaaacgttttgtacaggcg
ccagaggaagacagggaggctctcctggagcagcataaaaccaacaccacacagctctgc
aactctctgcgggagaaggagtgggacaacagagtgaatgatgagcagtgtgtgatgatc
atgtcagtgaggaagggcaagcggctcatctccaggctcctccccttcctcccctcaccg
caggctgccgccgttgtcatggcgatttcccgtaatcttcctgccctggccaagaaggac
aagcaggaccaggtgctgtgctggttagtggagccggtttctgcagtcattcagtcattg
tcaagctccacccttacagatctgctccaggagcttcagggcagtgagggccagctggct
acagtactgcacaacaagtttggtgtgacactgctctatctgatcctgagtgaaggagag
aggatgcaaagcactgctcccaactgtcaactcatggacgacaatcgatggactgagttg
gtgttttcagtgacgagggagttgctcagcatccccagctcatctctctcgccccccctc
ttcatgcctcccaacctgctctccctgttctcccgctacgtagatcgacagaggttggat
ctgttacaggacaagctacagaacacttcttcgtccagttag
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