Pungitius pungitius (ninespine stickleback): 119218443
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Entry
119218443 CDS
T07626
Symbol
fip1l1b
Name
(RefSeq) pre-mRNA 3'-end-processing factor FIP1
KO
K14405
pre-mRNA 3'-end-processing factor FIP1
Organism
ppug
Pungitius pungitius (ninespine stickleback)
Pathway
ppug03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
ppug00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
119218443 (fip1l1b)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ppug03019
]
119218443 (fip1l1b)
Messenger RNA biogenesis [BR:
ppug03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage and polyadenylation specificity factor (CPSF) complex
119218443 (fip1l1b)
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Gene cluster
GFIT
Motif
Pfam:
Fip1
Motif
Other DBs
NCBI-GeneID:
119218443
NCBI-ProteinID:
XP_037328779
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Position
9:complement(4113877..4121205)
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AA seq
557 aa
AA seq
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MSAEEADKTTTTDASGGDEEEEWLYGDESEGRDEDEEAKLNAAVSAPADASTEEAAAHAT
GNGVASEDTGEGEGDGAGAGEDVDSDSDSDDDDDDVRVTIGDIKTGAPQYTTYGAPPVNL
NIKTGSRPYGQASKMKGVDLEAPGNINGVPVLEVEVESFEEKPWRKPGADLSDYFNYGFN
EDTWKAYCEKQRRLRMGLEVSTIGSVTSKITVQQGRTGNDKDMSSLPVHTSKPDFTSPVG
LYKPAVSQLNRISPPQWPGPPPQDLSYYTKTSGTIDVIGGGTATISRVEGRRRHNLEGNN
IQVIAEQTDAEPTPAKIPPFFPPGALPPNIPPPPFLPPPPNVNAAPPLIPPPRLPITVPP
PGFPPPPSGPPPAIIPTMDSGHAGGYDARTVPPYPFPQGAYPPPMSGGVPPPWPPMMDNS
KPWEYYPRRDEKREKERERPRERTHEREREREHSPSAISYTSDEERFRFREYQDRGYVER
HRERSSREKEDRHRERRHREKEEGRHKSSRSSSRRRHESEEGDSHRRHKHKKSKRSKEGK
EAGDEISADQENQEAME
NT seq
1674 nt
NT seq
+upstream
nt +downstream
nt
atgtccgcggaggaagcggacaaaacgaccaccacggatgccagtggtggagatgaggag
gaggaatggctgtacggagatgagtctgagggcagagatgaagatgaagaagccaaactg
aatgcagcagtcagcgcacctgctgatgcctccacagaagaggctgcagcacacgctaca
gggaatggagtggcctctgaggacacaggcgaaggtgagggcgatggtgcaggagcaggt
gaggacgttgacagtgacagcgacagtgatgacgatgacgacgacgtccgcgtcaccatt
ggagacattaaaactggagcgcctcaatatacaacttatggcgctccacctgtcaatctc
aacataaagaccggctccagaccatatggacaagcctccaagatgaagggagtggatctg
gaagctcctggtaacattaacggggttccagtgctggaagtggaggtggagtcctttgaa
gagaagccctggagaaagccaggagcggatctgtcggactactttaactacggcttcaat
gaagacacttggaaggcttattgtgagaaacaaaggagactacgcatgggcctggaggtc
tctactatcggctctgtgacgagcaagatcactgttcagcaaggtcggacggggaatgac
aaggacatgtccagtttgccggttcacacgtcaaagccagacttcacatctcctgtcggc
ctgtacaagcctgctgtcagccagcttaacaggatctctccccctcagtggcctggtccg
cctcctcaggacttgtcctattatacgaagacgagtggtactatcgatgtgatcggtgga
ggcacggccaccatcagcagggttgaaggtcgacgcagacacaatctagaaggcaacaat
atccaggtgatcgctgaacaaacggacgctgagccgactccagctaagatcccacccttc
ttccctcctggagcgcttcccccaaacatccccccaccgccgttcctcccgccaccaccc
aacgtcaacgctgcacctcctctcatccccccacccaggttgcccattacagttcctcct
cctggttttccccctccgcctagcggcccccctcctgctatcatccccactatggacagt
ggccacgctggaggttatgatgcacgcacggtccccccctacccgttccctcaaggtgca
taccctccgcccatgtctggaggcgtgcctccaccctggccccccatgatggacaactcc
aaaccctgggagtactacccccgtcgagatgaaaagagagagaaggagagggagcggccc
agagagaggacacatgagcgggagagagagagggagcacagcccttcagcgattagctac
accagtgacgaggagcgtttccgtttccgcgagtaccaggaccgtggttacgtggagcgg
catcgcgagcggtcgagccgggagaaggaggaccgacacagagagagacggcatcgagaa
aaggaggaaggacgccacaaatcctctcgcagcagtagcaggaggagacatgaaagcgag
gagggcgacagccaccggaggcacaaacacaagaagagcaagaggagcaaggagggcaaa
gaggccggcgacgagatcagcgcagaccaagagaaccaggaggccatggagtag
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