Pungitius pungitius (ninespine stickleback): 119218501
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Entry
119218501 CDS
T07626
Symbol
pkd2
Name
(RefSeq) polycystin-2 isoform X1
KO
K04986
polycystin 2
Organism
ppug
Pungitius pungitius (ninespine stickleback)
Brite
KEGG Orthology (KO) [BR:
ppug00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
03037 Cilium and associated proteins [BR:
ppug03037
]
119218501 (pkd2)
04040 Ion channels [BR:
ppug04040
]
119218501 (pkd2)
Cilium and associated proteins [BR:
ppug03037
]
Primary cilia and associated proteins
Other primary cilia associated proteins
119218501 (pkd2)
Ion channels [BR:
ppug04040
]
Voltage-gated cation channels
Transient receptor potential channel (TRP)
119218501 (pkd2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PKD_channel
Polycystin_dom
Ion_trans
Fer4_24
EF-hand_1
EF-hand_7
EF-hand_6
Motif
Other DBs
NCBI-GeneID:
119218501
NCBI-ProteinID:
XP_037328893
LinkDB
All DBs
Position
9:15585747..15594042
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AA seq
904 aa
AA seq
DB search
MSSSRVRPQQLPQSQTGRLPHSLEPGEGIEMENIQHRDLGLGGVIGTPSPPSRQAWSRDN
PGFEPEEEIMEADWPPASPGRRSVSTASSGSGSGGGGGLGSYTGAGSSTQIPRGGLYPTP
SGDARPPDRLDHRSCMKRMLQRIRILWGTELMEDSDSSRERYLRNVLREMITYITFLITI
CILTYGMVSANMYYYTKVMSQLFLDTPLSAGDPSTFRSLSTMEDFWKFTEGPFLNGMYWE
VWYNNKSLPENQSLIYYENLLLGVPRLRQLKVRNESCSVHEDLRDEFLDCYNMFTPTNEE
RASFGPKIGTAWVYTSESDMNGSSYHGQISKYGGGGYYQDLSRTKEESAAQLQFLKDQLW
LDRGTRAVFLDFSVYNGNINLFCIARLLVEFPATGGVVTSWQFQTVRLIRYVSSWDYFVG
LCEVAFCLFIVYYMVEEVLEIRIHRLHYFKSLWNCLDVLIVVLSVVAIIMNITRTAMVGS
RLKGLLENHIAHPAFEPLANLQVQFNNMAAVIVFFAWVKLFKFINFNKTMSQLSGTMSRC
AKDLVGFAIMFFIIFLAYAQLAYLVFGTQVNDFSTFQASIFTQFRIILGDFEFSEIMEAN
PVLGPIYYTTFAFFIFFILMNMFLAIINDTYSEVKADMSQQRSEMEMTDLLKKGCNKALM
KLRLKKTAVDDISDSLRQAGGKLNFNELRQDLKGKGHTDAEIQAIFAKYDHDGDQELTEN
DHQQMRDDLEKEREDLDLERNSLTRPSSGRSFTRTQDDSEEDDDEDSGHSSRRRGSSSGG
VSYEEFQVLVRRVDRMEHSIGSIVSKIDAVIVKLETMERAVLKRRDVLGRLLDGVMEDER
LGRDTDAHSELLERLVREELERCESDDTVSQVSHPQPATPAGPRPRASSSLSTDGMSTNG
SSHV
NT seq
2715 nt
NT seq
+upstream
nt +downstream
nt
atgagttcatcccgagtcagaccgcagcagctaccgcagagccaaactggcaggttgccc
cacagcctcgagccgggcgaaggcatagagatggagaacatccagcaccgggacctggga
ctcggaggagtgatcggcaccccgtcccctccgtcgagacaggcctggagcagggataac
ccggggtttgagcccgaggaggagatcatggaagccgactggcctccggcgagtcccggc
aggaggtcggtgtccacggcctccagcggcagcggcagcggaggcggcggcggcctgggc
agttacaccggggccggcagcagcacccagatcccccgaggaggactctacccgaccccg
agcggggatgcgcggccgccggacaggctggaccaccgcagctgcatgaagcggatgctc
caaaggatcagaattctgtggggcacagagctgatggaggacagcgacagcagtcgagag
aggtacctcaggaacgtgctgagggagatgatcacatacataacattcctcatcactatt
tgtatattgacctatgggatggtgagtgccaatatgtactactataccaaagtcatgtct
cagctttttttggacacaccgctgtctgccggggacccctccacttttagaagcctttca
accatggaggatttctggaagttcacagaaggaccttttctcaacggcatgtactgggag
gtgtggtacaacaacaagagcctgccggagaatcagagtctcatctactatgagaacctc
ctcctcggggtaccacggctccggcagctaaaagtccgaaacgagtcctgctccgtccac
gaagatctgagagacgagtttctagactgctacaacatgttcaccccgaccaatgaggag
agggcctcgtttggccccaagattggaaccgcgtgggtgtacacatcagagagcgacatg
aacgggagcagttatcatggccagatttctaaatatggaggtggaggctactaccaagac
ctgtctcgtactaaagaggagtcagcagcccaactgcagttcctcaaagaccagctgtgg
ctggacagaggcaccagagcggtgtttctcgacttctccgtctacaatgggaacatcaac
cttttctgcattgccaggttgttggtggagtttcctgctactggcggggtggtgacctcc
tggcagttccaaacagtgcgtctgatacgttatgtgtccagctgggactactttgtgggc
ctgtgtgaggtggcgttctgtctattcatcgtctactacatggtggaggaagtgctggag
atccgcatccaccgcttgcattacttcaagagcctgtggaactgtctggacgttctcatc
gtcgtgctgagtgtcgttgccatcattatgaacataaccagaacagccatggttggaagc
cgtcttaaaggcctgttggagaatcacattgctcacccggcgtttgagcctttggccaac
ctgcaggtccagttcaacaacatggctgcggtgatcgtcttttttgcctgggtcaagctt
tttaagttcattaacttcaataagaccatgagccagctgtccggcaccatgtctcgctgt
gccaaggacctggtgggttttgccatcatgttcttcatcatcttcctggcctacgctcaa
ctggcctacctggtgtttggaacccaagtcaacgatttcagcactttccaagccagcata
tttacccagttccgtataattctgggagactttgagttctcagaaataatggaagcaaat
ccagtgctgggacccatttactatacaacgtttgccttcttcattttctttattctcatg
aacatgttccttgccatcatcaatgacacatactctgaggtgaaggccgacatgtcccag
cagaggtctgaaatggaaatgacagatcttcttaagaagggctgcaacaaagctttgatg
aagttaagactcaagaagacggccgtcgatgacatctccgacagcttgcgtcaggccggg
ggaaaactaaactttaatgaactccgccaggatcttaaaggaaagggccacacagacgca
gagattcaggccatctttgccaagtatgatcacgacggcgaccaggagctgacagagaat
gaccaccagcagatgagagacgacctggagaaagagagagaggacttggatctggaacgc
aattcgctgactagacccagcagtgggcggagcttcactcgtacacaagacgactcagag
gaagacgacgatgaggacagcggccacagctctcgtcgccgtggcagcagctcagggggt
gtctcctatgaagagtttcaagtgctggtgagacgggtggacagaatggagcactcaatc
ggcagcatagtgtctaaaatagatgctgtcatcgtgaagttggaaaccatggagagagcc
gtacttaaaagaagggacgtgctgggcagactgctggacggagttatggaggacgagcgt
ctgggacgggacacggacgcccacagcgagctgctggagaggctagtgagggaggaactg
gagcgctgcgagtctgatgatacggtgtcacaggtcagccacccacagcccgccactccc
gccggcccccggcctcgtgcgtcctcctccctgtccaccgacggcatgagcacaaacggg
agcagccacgtgtga
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